Array 1 257950-258466 **** Predicted by CRISPRDetect 2.4 *** >NZ_SQFO01000042.1 Escherichia coli strain NOR4_65 NODE_131_length_377895_cov_79.167229, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 257950 29 96.6 32 ............................T CCCACTTCCCGCGCTCCATATCGATGATATAC 258011 29 100.0 32 ............................. AAAAGGGCCGCATTGACGGCCCTGTGTTATCG 258072 29 100.0 32 ............................. GGGTGGCGGTGGTGCTGTAATTCACACCGGTA 258133 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 258194 29 100.0 32 ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 258255 29 100.0 32 ............................. CTCTGTCGTTTTCATATTACCGGCCTGCCACT 258316 29 100.0 32 ............................. GCCAGGAATGCAGCATTTTGCATGGGAAATGA 258377 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 258438 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 9 29 99.2 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACAGAGTTCCCCGCGCCAGCGGGGATAAACNNNNNNNNNNTATCGCAGCAACACCCCAGCAGGAGCACAC # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-881 **** Predicted by CRISPRDetect 2.4 *** >NZ_SQFO01000115.1 Escherichia coli strain NOR4_65 NODE_1613_length_851_cov_58.266747, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================================ ================== 1 27 93.1 32 --........................... GGATCACAAGGGCGGCTATCAGGGTGGACGGA 60 29 96.6 80 ............................N NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTCAGACTCATCAAAATAATCCTTTAAT 169 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 230 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 291 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 352 29 86.2 36 .........................NNNN NNNNNNCTCCAGTACTGTGATGCGATCTTTAAGTCC 417 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 478 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 539 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 600 29 100.0 41 ............................. NNNNNNNNNNATTCCCCCAGTCACCCCCGCCACCAAAATCA 670 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 731 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 792 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 853 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================================================================ ================== 14 29 98.3 37 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : | # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.26, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 275-2 **** Predicted by CRISPRDetect 2.4 *** >NZ_SQFO01000094.1 Escherichia coli strain NOR4_65 NODE_811_length_245_cov_58.922447, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 274 29 100.0 32 ............................. TCCGTTTGGTCCACCAAATGTTTGATGCTTCA 213 29 100.0 32 ............................. GGATGACCTGTCGCTAAAACTCGCCGCGTACA 152 29 100.0 32 ............................. GGCGTCATCATCAAACAGGGCGTCTAACAGCG 91 29 100.0 32 ............................. ACTATATATTTCCTCAACGAGTAATTTTGAAT 30 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : GG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-1.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //