Array 1 1710849-1710087 **** Predicted by CRISPRDetect 2.4 *** >NC_021012.1 Roseburia intestinalis XB6B4, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1710848 36 86.1 29 T..C.G...T...C...................... CGCTAGGATGTGATCTTGATACCGTGATT A,T [1710833,1710838] 1710781 36 100.0 30 .................................... TTAAGTTTGCAGATGGTGTTGCTTTGCCAT 1710715 36 100.0 30 .................................... TACTATGGTATATGTATTTCTTTTTCATCT 1710649 36 100.0 30 .................................... CGCTGCAACCAGCATTTGCAACGTGGCATG 1710583 36 100.0 30 .................................... TGCACCAACCTATTCGGGTTTTAATAATGA 1710517 36 100.0 30 .................................... CAGGTTCTCGTTTTTAATTCTATCACGCGC 1710451 36 100.0 30 .................................... ATACCGTGAGTATAAAAAGCACTGCATAGC 1710385 36 100.0 30 .................................... CGACTAACTCACACAAATTGTATAGAACTA 1710319 36 100.0 29 .................................... GGCTGCAACATGTCGATCATAACTTTGAA 1710254 36 100.0 30 .................................... AAGTGGTAAATGGTTTAATAAAAATAACTG 1710188 36 100.0 30 .................................... TGTTGATCGTCGGGAAGATACCGGATGAAT 1710122 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 12 36 98.8 30 GTTGTAATTCCCTGTTATCACTTGGTATGGTATAAT # Left flank : CCTTTATTGTAACACTCTTCATTTATGAGTTCTACCCCTAAAAAGTATCGTTTTCATTCTGTTTTTCTTTTTTTTCGCCGCAGATCCGCACTCACATTTCTATTTCGGTATCCAAAATTTCTGTTAAATTTTTCTGTTAAATTTTTTCAAAAAATTGTTGACAAATTACTTTTCCCATAGTATGATATCAAATGTGTCTGGCAGACAGATACAAAACAATTTACATATGCGCGAGTGGCTCAGTTGGTGGAGCACGACCTTGCCAAGGTCGGGGCCGCGGGTTCGAGTCCCGTCTCGCGCTCTTTAAAAGCTACAATACAATTTCATATATGCGCGAGTGGCTCAGTTGGTGGAGCACGACCTTGCCAAGGTCGGGGCCGCGGGTTCGAGTCCCGTCTCGCGCTCTTCTGTTAAAAACAGGGAACTTTGATTTACAAGGTTTCCTGTTTTTTGTTGTAGTGTAAAGGTTGATTACGGTTTTTCCGTAATTTCAATATACT # Right flank : AAGGGATTTTATTTTAAGGAGGATTTATAAGATAAACAGACGTACGTTTTTTTTCCTTATCTACCAATAAAAACCAGACAATATCCTCCGGTAATTTGTTCAGATCTGGCTGTTTTCTGTAGTAAATCCCCTCTGTATTTTTCAATAATCCTAACTTTCCAAATGGACTGGCGTTTTTTTCTTCGGGATTTGTCTCCTTTGCCGGCATATACATCCGTAAAATTGCATCACAATCTGCATAGACAGAACTCTGCGCAACCTGCACTTCATCGTCTAAATCACTGAGTAATGTCTCCATCTCATCATATAGCTGCTGTTTTTTAAATTCCTCATAAGAAACTTCATTAAAAAATAAATTCCATGCCGTTGCCAGTTCCCGGTTTTTTGCAATTTTGCAATGTATCAGCCATAATGTAAAATAATCTTCCACGCATGGATCATGTGCAAGAATCAACTGACCAATCGCAGTGAGCATAACACCCGTTTTCGGAGAATCTGTA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAATTCCCTGTTATCACTTGGTATGGTATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTGTAATTCCCTGTTATCACTTGGTATGGTATAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.30,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 2602847-2603671 **** Predicted by CRISPRDetect 2.4 *** >NC_021012.1 Roseburia intestinalis XB6B4, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 2602847 36 100.0 35 .................................... GATGATACTAATACACTGTAACCATCCTTACCATT 2602918 36 100.0 35 .................................... CTGTGGTGCAGGTGTTACCAATAACGCAGATAACC 2602989 36 100.0 35 .................................... AGGTTTGTAGACGCAGATCCGGAGCAGGAGCGCAG 2603060 36 100.0 37 .................................... ATCCATCGTGTTTGCCATATAAACAATATTGGTTTGA 2603133 36 97.2 35 ...........T........................ TTGATCCGGGCAGTTCCGCTGTCAGATTTTCGTGT 2603204 36 100.0 37 .................................... ATTATTCATGACTTCTTTCATTGCTTCCTTTTTCGCT 2603277 36 97.2 35 .........................A.......... AGCATAAGCCCGGTATCTTTGGCAGTTTCAATAAG 2603348 36 100.0 36 .................................... AGGCTTTACGATTTGTTTTTTGAAATTTTATTTATG 2603420 36 100.0 35 .................................... GATTTTCCATTGCATCAAAAAGATTTTCTATTCTA 2603491 36 100.0 39 .................................... AATCTCTGTAACGTGTTTTCATGGATTTATATAATGTAC 2603566 36 97.2 34 ..................A................. CATAGTCTTTAGACTTTAAGGCTTCCTTAAGGTC 2603636 36 91.7 0 .....A...TA......................... | ========== ====== ====== ====== ==================================== ======================================= ================== 12 36 98.6 36 ATTGAGATAAGAGAACCCCGTGGAGGGGACGAGAAC # Left flank : TTGACACGACAATCTGCCCGTATCAGATGGAAGATATCATAGAAGCACTGAATATTTTCCAGAATATCTGTAACCGGTATTTTTATGCAAGATTCCACTGGGAGGCAAAGGAAAAAAATACAGTATGGTTAGGTGGAGGATGTGGTTTTCTTTCAAAGACGGTTTTATATCCATTGCTTGGCAGTAATGCAGTAAAAGTTGTGGATAATGTGTTTAAAAATACACTGGGAAAAAATTATATTGTGCATAAACATACCAAAGATCTGCAGCTTAAGCTGGCACCGCATGTCTGTAAGTGTACAAAGTATCAGGGAAAGCTGTATCATATGGGGATGGGGAGGATTGAATTTGAGGAAATATAACAATTTTGCGCCGATAGGTTTAAAATCAGGCTTTGTGGATGTTATACACCAGTTTGATATTGAGGTTTCTCTCATTTGCGGGTTTGCCCCGCAAATGGGGGATGAAAGCCCTGTGTTTTAGGAGGTGTAAGGGACAGT # Right flank : CCTTTAGCTGTTTTTGTTATATACTTACACAAGTATAATTGAAAAAATCTTCAGTAAGGGGACAAATAAAAACAAGGGAGGAAACACATGAGTTATCTTTATGTCAGTGAACAGGGTGCGAGTATCGGGATAGAAGCAAACCGTTTTCAGGTAAAGTACAAGGATGGAATGATAAAAAGTATTCCAGCAGAGACGTTAGAGATGATCGAAGTATTTGGCAGTGTCCAGATTACGACACGCTGCCTGACGGAATGTTTAAAACGGGGAGTGAATATCCTGTTTTATTCCACAAGCGGGGCGTATTATGGAAGGCTGATCTCAACTTCTCATGTGAATGTGCAAAGACAGCGTATTTAGGCGGAAATTGGACACAATGAAACATTTAAACTGGAAATGTCAAAAAGAATCATTGATGCAAAGATTCGCAATCAGGTTGTTGTTTTGCGCAGATATGCGCGAGGCAGAGATGAAGATATTCATAGAATGATCATTGAGATGCA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAGATAAGAGAACCCCGTGGAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [13,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.60,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA //