Array 1 173297-177150 **** Predicted by CRISPRDetect 2.4 *** >NZ_GG657591.1 [Clostridium] asparagiforme DSM 15981 Scfld5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 173297 33 100.0 33 ................................. CGCGTTGCCCAAGGAGATGTCGCCCAACATCTT 173363 33 100.0 34 ................................. TTGTGCCAAGCTATGGAGGTTCACCGCTTGCTGC 173430 33 100.0 35 ................................. AGGAGGCGGCCAAGCCCCTCCTGCAGGAGGTAAAA 173498 33 100.0 35 ................................. CAAGTGGTAAGAATGGGTACATCAGCACGGTCCTA 173566 33 100.0 35 ................................. TACTGTGGGGCCAAGAAGCCGACGGTGGATTTCCC 173634 33 100.0 35 ................................. TCAGGTTGACTGTATGGAGGACTACAAGGCGTTTT 173702 33 100.0 33 ................................. ATCGTGGGCTTAATTATGATCACCCGCGAATCG 173768 33 100.0 33 ................................. TTTCTGAACTGCGAAAAGCGCTTATTGATAATC 173834 33 100.0 33 ................................. CGTCTGATTATACCCTCTCTCCCACTGGCCTGT 173900 33 100.0 34 ................................. ACAACGGTCAAGAAAAGATTCGATGGTGGCCACT 173967 33 100.0 33 ................................. CTTTATAAAGTCATTGATATACTTTGATTGATT 174033 33 100.0 33 ................................. TATCAAGCTTGGGGACATGTTGAAATACCTTGA 174099 33 100.0 32 ................................. TCCACCGGAATCCATCTAACAGATTGAGGTTC 174164 33 100.0 33 ................................. AACATCGATCCACATACGCTTAGCGCGATCTGG 174230 33 100.0 35 ................................. CGGTATCCCCATCCACGAAATACGCAATGGGCAGC 174298 33 100.0 34 ................................. CTTTCAGGCTCTCACCAATGCCCTTGATTGACGC 174365 33 100.0 34 ................................. CGTCTCACCTGTAAATACAGATTTTAGCTTTGTA 174432 33 100.0 34 ................................. ATGAACATGTGGAACGAGGAGCCGGACCCGGAGC 174499 33 100.0 34 ................................. AGGGACAGGGCAATTTCTACACCATCCCGTTTTT 174566 33 100.0 34 ................................. TACCAAGGGAAATTATCATGCGTGGCCTATGTAA 174633 33 100.0 34 ................................. CAACAGCTCCCACACGCTCCTCCAGCCTCTCCAG 174700 33 100.0 35 ................................. AGAAGTTGGAGGACGGCGAACCGCTGGCGAGCAGC 174768 33 100.0 33 ................................. CTGAATGGCCTTATATCACCGGCGCTATTCGGG 174834 33 100.0 34 ................................. ATTGCTTTCGGACGAACCAAGGCAGTAATACCAC 174901 33 100.0 33 ................................. TGCTACTGTATATGAGAATTACAACGCTGTTGG 174967 33 100.0 33 ................................. CCAGCCGGCGCAACATACAATGCGCATTCCAGC 175033 33 100.0 35 ................................. ATATTCCATCCGCCTCCCTTCTGATTGAACCTATG 175101 33 100.0 34 ................................. AAGGGTAGCGGATGGAGCGTGTGAAGAATAGGTA 175168 33 100.0 35 ................................. CGTTGCTATTATAAGTGCGTGTTTTGGGCGCTATA 175236 33 100.0 35 ................................. ATCATCAATCTGTACAACGAGGGTTACGAGGACGG 175304 33 100.0 34 ................................. AATGCACGCGATTGGTCAGCACGTGGTCGGGAGC 175371 33 100.0 35 ................................. CCCAGGCGCACGAACACCGGAGAGGCGGCGGACGG 175439 33 100.0 34 ................................. CGCCAGGTGCGAGAAGAGTGGTGGGCGGGTCAGG 175506 33 100.0 34 ................................. AATTATGCGAGGTGCCGCGAAGCTCTGTTGTATG 175573 33 100.0 34 ................................. AAAGGTAAGGAAATTATCACTAGTTCAGAGTCAT 175640 33 100.0 33 ................................. AATAAAATCAATATGCCGTTTGGCAATAGTCTC 175706 33 100.0 34 ................................. ACCGCAAGGTTAGCAACATGGGAATCAAGGGCCT 175773 33 100.0 34 ................................. ATAATGATCACCTAGGCCTATGTGCAGAAATACC 175840 33 100.0 35 ................................. AACCAACTTATCAGAATAGGAAGGCGATAGTCGAT 175908 33 100.0 35 ................................. CATTCACCGGCCAGAGCTGTCATGCTAAGGATAAC 175976 33 100.0 36 ................................. TCCAATAGCTCCGTGACGAATTGACGCCGCCACTTG 176045 33 100.0 34 ................................. AAAGTTTATCTGCTTAATTTAGGAGGCGCACAGA 176112 33 100.0 34 ................................. GAGGAATTGGCAAAACAGTTAGTTGACTTAAAAA 176179 33 100.0 33 ................................. ATTATAGGCCATGTTCTTAATTCCTCCTTTTCA 176245 33 100.0 34 ................................. CATTAAAGCGGAGGTTGCCGGAACGTCGCTGAAA 176312 33 100.0 34 ................................. TTATAGCACCAGATTTGAATTGCCGCCCACAAAG 176379 33 100.0 33 ................................. TTTTTACCGCCAGAAGCGACATTGCGGCGCTCA 176445 33 100.0 34 ................................. ATTCCAGTGCTACGGCTACCTGAAGGGCAAATGT 176512 33 100.0 33 ................................. CAGCCAGCCGGTCATCCATATCGCGTATCTCCC 176578 33 100.0 34 ................................. TTGTGGCACTTTGGACATGTGATGAGCTGGTTGT 176645 33 100.0 34 ................................. ACGGCACTATCCAGAACGGGACAGTTCGGAATCA 176712 33 100.0 35 ................................. CAAGAAAGTGCTGATCGAGAATGCAGACGCAAAGC 176780 33 100.0 34 ................................. TGTTAGTTCATTAATCATGACAGGTGTTTACAAA 176847 33 97.0 36 ...................A............. AGAAACGCCATAGGAAAGAATGGCGCTGAGCACAGC 176916 33 100.0 35 ................................. AATCAGCTATGCAAAGAGGATGGATCGAGGGTCAA 176984 33 97.0 34 .....................A........... ATAGGCACGTCCATAAATGGATAAGTTCAGCTCA 177051 33 81.8 35 ..........A.A.......TT.T......T.. ATTTAGGCGCTATTTTACCATCCGCTGTCGTTTTC 177119 32 72.7 0 ....-..G.......AAA...TC......G..C | ========== ====== ====== ====== ================================= ==================================== ================== 58 33 99.1 34 GTCGAGGTCTGCGAAGGCCTCGTGGATTGAAAT # Left flank : GAGGTTGACAGCCTGCGCTTTTATCATTTGGGGAACAGCCATAAAGCAAAAGTGGAGCATGTGGGACTTTGCAAAGGGATTAATGTGGAAGAGCCATTGCTTTTTTGAGAGTATTTGATGGATGTTTTTCAGGGGAGCCGGCTTAAATGAATGGGACGAAGAGGGGATTTCAAGAGAAATGTAAATAAATGGTGAGTATTTCAGGGGGTTATTGGGCGTGGTTGGGTCGAAGCGATTGAGGAGATGAGTATGTATTGCTTAAAGTCGTACCGGATTGAGTGGATATTCCTTTAGGGCGGCTATAGGAATCAGCCGATCAATACGTTCAGGTGCGAAACCCAAGTGAACATAAATCCCCCAGCAGATTCGCACCAAGATAATAGACGAGTGTCGATAAAATGGAAGGTTATTTAATAAAGGACTTGGGGGAATGTAGTGAAATAAAATGATATTTGTGTAAATGTGCTGAAATGATATGCTTTTTATTGAGCATTTTTGCT # Right flank : CTATTATGTAAAATATATCAATGCACTCTAGCTTGTAAATCTCCTTGCATCCTCAACTTTTACATACTATAATAAAACAGCGTAAAACGAAAATGACAAAGATAAAAACACAAACTGGTCGGTAGTCCAGTTGCGGCTTCTCATCTTTCAATCTCTCCTCTCAAGCCGTCAGTAACCTTCCTCCTTAGGTCGTCCATTCTTTGCCCATTCAAACTTTTAAGGAGGACAAGAAATGGACAATGCAGCGGTAACACTACAAGTATTTTTCGAAGATCCTTTTTGGGTAGGAATTTTTGAGCGGGTGAGTGCCGGGAAGTTAGAGGCATGTAAAGTGACGTTCGGTCCGGAACCCAAGGACTACGAGGTTTTGGACTTCATCCGGAAAGGTTACTTCGGGCTGCGGTTTAGTCCGGCTGTGGAAGCAACTGTAAAGAGCCGTCCGGCAAGCCCCAAGCGAATGCAGCGGGAAGCCAGGCGCGAGGTTCAGAATGTGGGAATTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGGTCTGCGAAGGCCTCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.20,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : NA // Array 2 184710-185015 **** Predicted by CRISPRDetect 2.4 *** >NZ_GG657591.1 [Clostridium] asparagiforme DSM 15981 Scfld5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ================================== ================== 184710 34 100.0 33 .................................. GCAATGGCTTCATTCTTCCACAATCCGCCCTCG 184777 34 100.0 33 .................................. AATACTGCCTTTACGCTTACTCCTCCACTGAAT 184844 34 94.1 34 ..............A...A............... ATTCTGACGTTACAAGGCGAGATTGCCAAGCCGT T [184854] 184913 34 100.0 34 .................................. ATCCCGGACGGCAGCATAACGCTTGCAAAACTGG 184981 34 88.2 0 ..................A.A..C.....T.... | T [184990] ========== ====== ====== ====== ================================== ================================== ================== 5 34 96.5 34 GTCGCATTCTGTGAGGGAGTGCGTGGATTGAAAT # Left flank : TGCAGAGAACAGGAAGCAGCGGGCGAATTGGCCGATGTAAACGGGGCTGGTTCTGTGGTATTGCGGTTGTATTTGGAAAAGGATCCGGCGATCTATGGGATGGATTGCAGGCTTGAAGGAATGGGTATGAAGGTACCGGTGGAAGCTTGTTCCGATGGCGAAGTCCTGAAAATCACCGTAAAAGAGTGGGAGACTATGTTGCGGATGGTAAAGGAACTGATATTGAACGGAAACCTTGATTTGAGGCGATATGCAGCGGGGGAGTGTGAGAATTAAAAACGGGCGATAGGAGATTGAAGGCAGTGGGCGGAGAATCGTAGAAGACACATAGTGCGAATCCTAAGTGGACATGAAAATGCAGAAGGATTCGCACTGGAAAATTGGAAGTTTATGGGGAAATATGGTGCGGTGAAAATATAATGGTTGAGTTTTCGAGAGAGGAGGGGTACAATAGGGATAAGAAATTGAAGGGAATAGAAAAAAATTTGGTAATTTTTGCT # Right flank : TTTTCCCGGCCTAGGCCATCTACTTGTCACACACTCCATTTTTACGACAGGCTGTGCAAATTGAAATTAAAATCTCTATCCCCCACCCTCCTCTCACAATCTCCACACACAAAAAAGAACTCCTAACTCCCTCATCCCCAGTTAGCAGTTCTTTTATTTTCCCTCATCAATTCAACCAATTCAATTCATTCTCACCAAATCGACAAAACCACCGCTGCAATCCCAATCCCTGCAAATATAACACCGCCCAATCTTGTGCTAATCCGATAAAGCTCGGACGGTTCATCTGCATAACTGGATTTCCATTGTTCCGTCAGCTTCCATATCACTTCCGGTTTCAAAAATGCAAAAACACCGATTACTATAAACACAATACCCCAGATCATATTCCAAACCATAACAGCCCATCCTTCCCACCGCCATTTTCCCGGGTGAATCCCCAACACAGACCCCAAAAAATCGATCGAAAATCGATCAACAATCAATCATCAATCCCCAAT # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:0, 3:3, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATTCTGTGAGGGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : NA // Array 3 1147731-1148298 **** Predicted by CRISPRDetect 2.4 *** >NZ_GG657591.1 [Clostridium] asparagiforme DSM 15981 Scfld5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 1147731 33 100.0 35 ................................. ATACTATCATATGAGAGGAGGATAACATGGAAAGC 1147799 33 100.0 33 ................................. ATGTCTACAATATCCTTTTCGATGCCTATCACC 1147865 33 100.0 34 ................................. ATCAATGGATTTATCACATAATTTTGAGATTATT 1147932 33 100.0 34 ................................. TTCATACTTTCCCCCATTCAACTAGATAAAATTA 1147999 33 100.0 33 ................................. ATAAATCTCCAAGCGTGATGGATAATCCTGTAC 1148065 33 100.0 34 ................................. AGGCACTTGGTTTTATAGGAAATAAGCTTTTCCG 1148132 33 100.0 35 ................................. TCTTCCAGCCAGCTCCGCAATGCGGAAACGGTTGG 1148200 33 87.9 33 ........T.........CTC............ TGACTGAGCTTTTACAAGATCGAACACATCTTC 1148266 33 81.8 0 ...GAG.T...............A.....G... | ========== ====== ====== ====== ================================= =================================== ================== 9 33 96.6 34 GTCACAGCCTGCGAAGGCTGTGTGGATTGAAAT # Left flank : GTTGACGGAGATACAGGAACGGTGAAACTGGTGAGAAAAACCTATAAGGATTTGGGGATGGATATAGCGACGGAATGCGAGCCGGTAAAAACATTGAAAATAATGGCCTGTGCAGAACCTCTCCGCCACGATGTCAGTTATCCGCAGGTGGAGGGAGACGAAAAGGAGTCGTTTATTTGGTTCAACAATAACAAAATAAATGAAGACTCGAAAAAGCAGCAACCAGCATTTTCAAAAATACTTCCAAAGCCAGAGGAGGAACTGGATACAAATAGTAGTTCTGGAAAACGTCTGCATACGAAAAAGGCAACCCCAAAAGCATACCACCGTGCGAACCCTAAGCGCACATAAAAACCCCAGGACATTCGCACCGAGATTAGGAGGAGAAAGAGGAGGAAAAAGAGGAGAATGTGTGAAGAGGGGTTGATTTGTTGGAGGGAATGTGTAGAATATGAGATAAGAGTATCGAGATTTGTGAGGAAAAATTGGTGAGATTTGCT # Right flank : TACACAGGCGGTTGGCTAATTTACTAACCGATGACTCACAGCCTCCGCCTTTATTCCCCCTCCATCCACCTTCTACCCAAAACCCCCCAACATTTCACCAAAAAATTTCCCCTCATCAGGATACTTCCTCCCAAAATCCGGTACAATAAACACTAGACCGGAAAAGGAGGAACCCAAAATGAATGACTCAAACAACCATTGCACAATCAATCTCCAAACCCTATCTCAATACCAACAACACCTCTACGAACAGGAAAAATCCCACCCTACAATCCAATCCTACCTGCGCAGCCTCAAGGCATTCGCAGTCTTTTTAGACGGCCGTTCATATACCAAAGAAACTGCGATCCGATGGAAGGAAACCCTAACTTCCCGCTACGCCCCCAACACCGTCAACGCCATGCTGGCCGCAATCAACGGCTTTGCTGAATTTTCAGGCTGTCCGCAATTCAAAGTAAAACCCCTAAAAATTCAGCGCGAGCTATTCATCCGCCCCGAGC # Questionable array : NO Score: 9.09 # Score Detail : 1:0, 2:3, 3:3, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACAGCCTGCGAAGGCTGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCACAGTCTGCGAGGACTGTGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.10,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //