Array 1 187645-188895 **** Predicted by CRISPRDetect 2.4 *** >NZ_RPBK01000001.1 Cronobacter sakazakii strain SC25 Scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 187645 29 96.6 32 .C........................... TTACCTCGGCAGCTTTTTCATTTTCACAACAG 187706 29 96.6 33 .C........................... GGTGGCTAATTACGAAAAGCTGGCGGCAAGTAT 187768 29 96.6 32 .C........................... ACCAGGTTTATTCGCAGATGGGGGCGACGTTC 187829 29 96.6 32 .C........................... CCCCATCTGGAGTGGGGCTTTTCTTTGCTGGT 187890 29 96.6 32 .C........................... CGTTGTGGACGTGTTGGTCGCACGGAAAAACG 187951 29 100.0 32 ............................. GCGCGGCTCGTCTTTCCAGCACGCCAGCGTTT 188012 29 100.0 32 ............................. CTGCCATCATCGTTGCGCTTAATTCTTTCTTC 188073 29 100.0 32 ............................. TAAAAACATTCCGTACTAATATTGACTTCTAA 188134 29 100.0 32 ............................. CCGGAGCAACTGCGCATCGCGCAGCGCGGCTG 188195 29 100.0 32 ............................. TGGGCGCAGCCCGGCGCGGGCCTCGTTCCCGT 188256 29 100.0 32 ............................. TTAATTCCAAATAATGAATTCCATATTCATTA 188317 29 100.0 32 ............................. CCATCTCACCAACTTTAGCGGCATCAGGCACA 188378 29 100.0 32 ............................. TATTAAACGCGGCGTCGGGGGCGTCTGGGTCG 188439 29 100.0 32 ............................. CCCGTTAACGGCTGCTGGGTTTCAGACGGTAA 188500 29 96.6 32 ...........................T. ACACCCTGCGCCAGCTGCTCACCCAGGCAATA 188561 29 100.0 32 ............................. GGATGGATAGGACGTGGGCTGGTTGCTGATAC 188622 29 100.0 32 ............................. CGCCAGGAATCAACGGTAATTTCCGTTGGCAC 188683 29 100.0 32 ............................. CAGCTCGTCACCCATTGCCAGCTTGTAATCTA 188744 29 100.0 32 ............................. CGGAACTCGCCAGGGTGGCTGGTGTAAGTCCT 188805 29 100.0 32 ............................. GCCAGCGAGGCATCGGATGCGAGGGTTCATCT 188866 29 79.3 0 .C...........C...A..A....T..T | C [188891] ========== ====== ====== ====== ============================= ================================= ================== 21 29 98.0 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTTAAATGGATGATGGCAAACAACATCGCGTTTATCGTCGCCAATATCAATATCAACTACCGTCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTCACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGGTCTTAAGCCAGGTCATTACACTTGAGCCGGAAGGCGAAGTGGTCGCCGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGATCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCTTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCAAAAAAATGCCATTCAGTATAGAGGGTTACCGTTAGT # Right flank : TCCCAGGCTCTTCGCGCCTGTCACTCGCCGCCCCCTTTCCCGCCACATTCTTCAGCAACGTTTATACTTCAAAGCCCTTGTTAAATTTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCATGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCATCCGCGCCGCCGTTTACCACTTTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGATGTCCGACACATTGTGCTGACGCATCTGGATTTCGATCACGCCGGCGGGCTGAGCGATTTCCCGCAGGCGCAGGTGCATCTGATGCAGCGTGAAATGACGGCTG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : CCGTTCCCCGCGCGAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 215314-216868 **** Predicted by CRISPRDetect 2.4 *** >NZ_RPBK01000001.1 Cronobacter sakazakii strain SC25 Scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 215314 29 93.1 32 .T..........C................ TAAACAATTTATCGCTATTTGTTTCCGTGCAT 215375 29 93.1 32 .T..........C................ CCCCCTCTGGTTTTGAGGAAGAAAATGATGGC 215436 29 93.1 32 .T..........C................ ACCTTCGACACCGGGTTTCAGACTGACCAGCC 215497 29 100.0 32 ............................. ATATCGTCCGCGTTATCGCCGTTTTCTTCGCA 215558 29 100.0 33 ............................. ATATTGACCGCCACGTATGACGCCGAGGCAGAC 215620 29 100.0 32 ............................. CTCGTCATACAGGGCATTTGCAAGACGGGTAT 215681 29 100.0 32 ............................. TGAAGTTATCATGCCAACGCCATCTTGACGAT 215742 29 100.0 32 ............................. CATCTTGTTAAAGTCGTCGTGATCGGGCCAGC 215803 29 100.0 32 ............................. AGATCCTGAATGAGACCGAGCAGAACACCATC 215864 29 100.0 32 ............................. ATTTCATTGGTAACTGAGTTGACTGACGAGGA 215925 29 100.0 32 ............................. GATTACCGCCATCTCGTCACGCAACTTTTCAT 215986 29 100.0 32 ............................. TGGGAACGCATTCTGAAGGAAGACCCGGCATC 216047 29 100.0 32 ............................. GTGGCTTGACTCCGCGCAGGGTCTGCCGTGGT 216108 29 100.0 32 ............................. GCCGCATTGCAGGAACCACTTATTTTAAACTG 216169 29 100.0 32 ............................. CGCTGCAATGCATTCTCAGAGCTGATTTTATT 216230 29 100.0 32 ............................. CGTCGTCACTCGTTGGTAGTGCCAGCGCCGCA 216291 29 100.0 32 ............................. GCATTATCCAGGTGGGTAGCGTCATTCAGATG 216352 29 100.0 32 ............................. CTTCCACCGCCAGACTTACAGACTCCGCTCAA 216413 29 100.0 32 ............................. CTCAGCGATACGCGCGTCTTTCTCCCTGCAAT 216474 29 96.6 32 ............C................ GTAGTGACGCTGACGTGATGGTCTGCTTCGGT 216535 29 93.1 32 .T..........C................ GCTCATTCATTTGAGTTCTCTCCTTTATTATC 216596 29 93.1 32 .T..........C................ CAGTACGGAAAAATGACCCGCGCGGCGGTCTC 216657 29 89.7 32 .T......G...C................ GAGAAATAACCCTTGTGGTCTGTTCGCCCTAT 216718 29 89.7 32 .T..........C....C........... TCAAAACCTGAAATTTTTAATTTCGCGGGTGT 216779 29 89.7 32 .T..........C.....C.......... GCACCAGCATTAACGCCGAATACATAATTATG 216840 29 96.6 0 .T........................... | ========== ====== ====== ====== ============================= ================================= ================== 26 29 97.2 32 GAGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAACCCGCGGCGGACATGCTGCCGCCCGCGATACCGCAAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGCTGGTCGTCGTGACGGAAAACGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGCGACGTATCGCGTCGGGTGCGTGAGATGATCTGGCATCAGATAACCGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCCTGGGTCACCAATAATGAATCCGGTTTCGATTTCCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTGAGATGTTGTTGCACGAAAAAGTGTAATAGATACAAGTATATAGTTTTAGA # Right flank : GTTATTGAGTAGAATCGTCTGCCTTGGTGGCTGCGCTTCGCTTACCCACCCTACATATAAACTGGCGGGCCTGCCCTTAACCGATCCACAAAAACTTCCCGCACCTGCTCTCGATTGCGCAATAAACCGGCATACGGCGCGCGTTGGGTTGCAATCGCCGGGGGCAACAGACATAATGCGCCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGTGTGTGCCGGGATGTAGCTGGCAGGGCCCCCACCCATTTCTGCCCTAAGTCCTTTTTTCAGCTTTATCCTGGTGATGAAACATCATAAGAGGTGTATTAACTCATCCTGGATACGAGCGGCCTTTGGCTGCTAATATCAGGTGCGGTTATTTAATATAACGTTTATGTTTTCATTTATGAGCACTCAGAAATGGATAATTCACTCAGGCGATTA # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //