Array 1 9269-11022 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBNQ010000045.1 Sedimentibacter hydroxybenzoicus DSM 7310 contig45, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 9269 30 100.0 36 .............................. AAAGGTGTTAAGATTGCAAGTCAGAATATGCAAAGT 9335 30 100.0 35 .............................. TCAAAATAATGCGGTTCAGGTCCATATCCCCATGC 9400 30 100.0 36 .............................. CAGTTTTACCAATATCAACAACTTCGATATCTCCAA 9466 30 100.0 38 .............................. ATAAAGATAATTTAGTAATGCAGAAGCTGAAAGAGAAT 9534 30 100.0 36 .............................. TCTTGATTATGATTTTAATAGTTTGTCACAATATAC 9600 30 100.0 35 .............................. TGAAGAAATCATCAAGAATGCAAAATTTGAAACCC 9665 30 100.0 37 .............................. TGCAACGGTAGCGTTGGAGATTGCAAACCCGGTATTA 9732 30 100.0 36 .............................. TCCCGGTCCATACTCTTTGCCAATCTCCGGTAAAGA 9798 30 100.0 37 .............................. GCAAAACCCGCAACCTCTCCCAACGGTCCAACTTTCG 9865 30 100.0 38 .............................. GTTCAAAGCCCGTCGTTTCTTTTGTCTCTACGTTAAAA 9933 30 100.0 36 .............................. TCGAATTTGCGGGAACGGTGATCCCGCTTATTAAAT 9999 30 100.0 36 .............................. TGGAGAAGTCTTTTTGAAGATTATCAAATCATCATA 10065 30 100.0 38 .............................. ATAATTCAGGCAATAAAAACAGTATGGCAACGCCTATA 10133 30 100.0 36 .............................. TGAACTTTGCGTAAATATAGTAAATATCTTTTGCCA 10199 30 100.0 35 .............................. CATGAATTGAAAGGAGAATAACAATGCCAAAACCA 10264 30 100.0 35 .............................. TACTCTCCGTCTGTCCATCTTGCACAGCACCCAAA 10329 30 100.0 36 .............................. ACAATAAAACTATCTTTATTTCTTTGTTCAATCCAA 10395 30 100.0 35 .............................. TGGATGGAGCCGTAAACGGTTCAAATGCAAATATA 10460 30 100.0 36 .............................. GCATGATAACTTCATTTATATCCAAAACACCGGTTG 10526 30 100.0 38 .............................. TAAGGAGTAGGTACAGATCTGTAAATGGAGCAGACACA 10594 30 100.0 36 .............................. AATAATAAACAAATAGTAACTGTATGGGTAGAAAAT 10660 30 100.0 38 .............................. CATCTATTTCATCTGGTCGTAAACCTCTAAACATCTAC 10728 30 100.0 36 .............................. TAAAATTACCTTTCATCTATTCACCCTCCGTTATTT 10794 30 100.0 37 .............................. TCAGGCAGACGAGGAATATTGTTCTTTCTATCTTTAA 10861 30 100.0 37 .............................. TAACGAGTGACGGATGTCAGCCTGAGTGTGAATTGAG 10928 30 100.0 35 .............................. ACCTCCAGTGTCACTTCAATACTCTGCCCGTCCTT 10993 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 27 30 100.0 36 GTTTATAGATTACCTATGAGGAATTGAAAT # Left flank : GAAGATTAATAAGGATGGAACTTTATAAAATAGAAAAGCATTTAATGTCAGAGAAAATTTATGAGCCTTTTATTAGCAAATGGTAGGTGAGCATATATGTTTGTTATATTGGTTTATGATGTAGGAGAAAAAAGGGTTGCAAAAGCGTTAAAAACTGCGAGAAAATATTTGTACTGGGTTCAGAATTCTGTATTAGAAGGTGAAATTTCTGAGGCAAATCTACGAAAATTAAAAGATGAACTAAAGAAATTATCTGATGAAAGTGTGGATTCTTTTATCTTCTATTCATTTAGAACAACTAAATATTATGATAGAGAAATTATTGGTGTAAAAAAGGGTGGGCAAGGGTTATTTTTATAATTGTCGATGTCTGATAATGTAAAAATATACGGGGGGCGACAATTAATCTTATATTGAAATATCAGAATTGTTGCATATTTCTTTTTATGAAATAATTATATTAAGTTTTATATTTTATTGTAAATCTTAATATTTTATGG # Right flank : TCTACATTTTCTTTAAGATATAATGTAAAGCTATTTTGTTTATAGAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTATAGATTACCTATGAGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.40,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [88.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : NA // Array 1 1810-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBNQ010000057.1 Sedimentibacter hydroxybenzoicus DSM 7310 contig57, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1809 30 100.0 37 .............................. TCTACATTTTCTTTAAGATATAATGTAAAGCTATTTT 1742 30 100.0 38 .............................. TTTATAGAAAAAAATATAATGCCAAGCTCTTATTACAA 1674 30 100.0 35 .............................. ACAGATATAAAAGAAATTAATTCTATGTACCTCGA 1609 30 100.0 37 .............................. ATAGTTTAAAAGCTGCATAGCAGCTTAAAATAAAAAA 1542 30 100.0 36 .............................. TAAAACCCGGATTGGAATAGCAATGAGGTCAACTGC 1476 30 100.0 36 .............................. TAGGAGGTTAATATGGCAGCAATTAAATTTACAGAC 1410 30 100.0 35 .............................. TAAAAGTATGCACTGATTGCCATACTATGGCACCG 1345 30 100.0 36 .............................. TATGGTTCTGGTAATGGCATCCATGCCACAGCTTCA 1279 30 100.0 35 .............................. TAGCTTTGATAGAAAAAGTTGAGCAGCCAATAAAA 1214 30 100.0 36 .............................. GATTATAAGCGTGATGTTCATGAACTTGATAAGGTT 1148 30 100.0 34 .............................. ACAAGACCATGAAAGTGAACAGCACCATCAGCAT 1084 30 100.0 35 .............................. CAGGTTCTTTCGGTATTACCACCTCTGGACTTCCT 1019 30 100.0 35 .............................. TTCCAATCAACACTTAAATACGATTCTAAAATCTC 954 30 100.0 39 .............................. AACATTGGCAAACTACCATCCGTATCACACGCAAGCCAT 885 30 100.0 36 .............................. TGACATTCACTAACTGAAGTTGCTATGTTTTCGACA 819 30 100.0 37 .............................. AAAGTTAAATGTTCAATAGCAACCACCACCTTTACAA 752 30 100.0 35 .............................. AATTCTTCTATGTTCATATTCGTATATACAGGCAC 687 30 100.0 36 .............................. TCTACCTTTTTCTCCAACTGTTCTATTCGGTAATTT 621 30 100.0 36 .............................. TACTCTCCGTCTGTCCATCTTGCACAGCACCCAAAT 555 30 100.0 35 .............................. TAAAATAAATTCTAAACGCTATGATATAGGAACAG 490 30 100.0 37 .............................. AACATTACTTTTCCAAAAGGTATATACCCCAACCTTG 423 30 100.0 34 .............................. ATCCATTTGGGTCATGGTCAAAGGCGAGTCTCAC 359 30 100.0 36 .............................. CCGGAATAGTGACGGTGATTATGTACCCGCAACAAC 293 30 100.0 36 .............................. TTTTTGCAAAAATACAGTATTCCATATGAAACCCCC 227 30 100.0 36 .............................. TCAAGGAATTCCATTGTATCCTTGTCTATCATTTTA 161 30 100.0 36 .............................. ATTCACCTCCTCGAGCTTTCGTCTGCTACTCGGGTG 95 30 100.0 35 .............................. TGCCTACCACCTTGCAGAGCTGTCTCAACATCCTC 30 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 28 30 100.0 36 GTTTATAGATTACCTATGAGGAATTGAAAT # Left flank : | # Right flank : T # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTATAGATTACCTATGAGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 1 1382-1221 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBNQ010000044.1 Sedimentibacter hydroxybenzoicus DSM 7310 contig44, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =================================== ================== 1381 30 73.3 35 AA.CGC.....G..GG.............. CCTCATTTACTGCCACAACCAAGTTTGATTTATCA C [1373] 1315 30 100.0 35 .............................. CTGAAAGCGGAAGGATATAGCAAGGTTTCGATTAT 1250 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =================================== ================== 3 30 91.1 36 GTTTATAGATTACCTATGAGGAATTGAAAT # Left flank : CCTGATGTTTATAGATTACCTATGAGGAATTGAAATTAAAAAAGTAGTAAACTTTCTAATTCTCAATCATATGTTTATAGATTACCTATGAGGAATTGAAATATGCAGTTCAAAAGAAAATTGATGAATTGTCTTCTAGTGTTTATGCTAATCTAAAAATAGGTCAGCCGGCTCATCGAAAATTAGGTCAATATCAGTATAATTAAAATGAGAAGGAAAAGCAAACCAAATATATTTGAATATTAACCAAAAAGTTTAATATACAAGAGAAATTATGGTTAGTTGTAAATATGCCGCTCTGTGAATCAGAAGGAGGGCGTAGCCCGACTGGAGATTCACAGAGCGGCGGCTCGATTTTGCAACAACGCTCATTGAAAATTAGGTCATTTTCTTTAAAAATATGATATCCTTTCAGTATGCACTGAAAGGAGGATGTAAAGGAAGTGATAAAATTGAATCAAAAACAAAGAATCATACTTCAACACATTGATGGTATGAGT # Right flank : ATAAAGGAAGAAAAGGAGTAACTCAAGGTGGTGGTGTGCTGTGCAAAGTTGCAACAGAGATGAGGGGAGGTCCTTCGGCAAGGGTTGTACAGGCAAACTTGTCAAACTACCTTAATGCTGCTGAAGTAAAGAGCTACGGTAGTGAGCGATTAAGGAAAAGGCTATACAAATAGTCAAGTGGGTTGTATGAAGATGAACGAAAGTGAACCATTGATGAAGTATCGATAGCGTAAAAAGTTGTCAAAACTTAGCTGTCACCACTGGCTAAGGACAAGAGTAGAGGAATCCTGATAGCTGGCTACTTGGCAACCGGTATTAAGATGGCATGAGCATACAACAGGCTTTGTTGCGAAACACAGGAACCTGGACTGCAATGGTAAGCGGAAAAGCACAAGTCACAGAAAGATGAGGCTGAAAAAGTGATGTGCAGTACAGGGGCGGAACAATTCGTAGTAGTGAAGAAGTTACTGTAATGGTAATGGAGCGAAGAGATTGTATCA # Questionable array : NO Score: 7.91 # Score Detail : 1:0, 2:3, 3:3, 4:0.55, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTATAGATTACCTATGAGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : NA // Array 2 11133-1780 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBNQ010000044.1 Sedimentibacter hydroxybenzoicus DSM 7310 contig44, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 11132 30 100.0 37 .............................. ATAAGATTTTGCTCTATGAAGGAATGGCGCAAGTAGC 11065 30 100.0 37 .............................. ATAATAAGAAGCCCGGCAAGAAAAACAGCAGCAATAA 10998 30 100.0 36 .............................. TTGAATGGCTTACATATAATCCTAATAATATACCAT 10932 30 100.0 35 .............................. AATGGTATGTCCTCATCATCAACCGGTATAAATAT 10867 30 100.0 37 .............................. TTTCATTTTCAACATCCATTTGATTTTGTATATTATC 10800 30 100.0 37 .............................. TCAAAATTAGCATCATGGTTTCCAGGAACAATTAATA 10733 30 100.0 38 .............................. TGTTTTGATGCAAAGGATTTCGGTCACGATTGTTATTT 10665 30 100.0 35 .............................. AAGATTTTGTACTCGGTAAGTAAATAGATTGCTTT 10600 30 100.0 37 .............................. TTGTTCCGCAGCAGCTCTTGAGTATTATAAAATAATT 10533 30 100.0 37 .............................. TATGTTAAAAGAATTAGCACAGTACATAGTAGGGCTG 10466 30 100.0 36 .............................. TTAAAATGTCTCCTTTTGTATTTCTTCTAATAATTC 10400 30 100.0 36 .............................. ACTACTGTCGAAAGAGGTGATCGGATGTATGTTAAA 10334 30 100.0 36 .............................. GAGTGCCGTATTTGCAACAAATCACTTTTCACCGAA 10268 30 100.0 35 .............................. TTTGTTCTACCTTCCCATTGAAATGCTAAGTCCTC 10203 30 100.0 36 .............................. GTACCAGGGGTGAAGCATATGTCAAAACATTATATC 10137 30 100.0 36 .............................. GTGTGTTACTGAGCGCCTCTGTGTCTGGTGACCCAT 10071 30 100.0 36 .............................. AAGCTGGCAGGTACTGACACAAGCAAACTCTCTCCA 10005 30 100.0 37 .............................. AAAATATAATGGATGAAAAAGAAGTAGGTTCTCTTCC 9938 30 100.0 37 .............................. TAAAAGGTGGCATAAATCTCATAGATGCTACTATGAC 9871 30 100.0 35 .............................. TGGCAATGAAATAGAATCATTAGTAGGACAATCAT 9806 30 100.0 36 .............................. CAATATTCTTTGAATAGATTCCATCTCTCCGGCTCA 9740 30 100.0 35 .............................. TTCTCAGGGAATATCGTGAGATTGTTATAAGCAGA 9675 30 100.0 35 .............................. CTGGAGGTACCGTAATAGTTCAAGAGCCGCATACC 9610 30 100.0 36 .............................. ATTTTACAATTGACGGTATTAATATAATTAATCGTG 9544 30 100.0 35 .............................. ATACATGCAAACGAAGTAGGTGAGACTTATAACGT 9479 30 100.0 34 .............................. ATTTATGCCAAAAATCTCTTGAGCTCATACACAT 9415 30 100.0 37 .............................. CAAGTTATTAACCGGCTGTTCTATAAGCTGGGTGTAG 9348 30 100.0 36 .............................. CTGTTACTTCCATAGCATCACCTATAATTCTTTTTA 9282 30 100.0 35 .............................. TGACTTCGTGCTTTCTCTGCCATCCCTCGGGTCCG 9217 30 100.0 37 .............................. TTCGCTCAACTTGAGCGTTTAGGTGAGGAAGATTTAA 9150 30 100.0 36 .............................. GGAAATAATCTTGCTACAACCGAAGCGGACATTGTA 9084 30 100.0 35 .............................. AAGCAAGACGTTGAAGGTAAAGAGGTGCTAGTAGT 9019 30 100.0 35 .............................. TCTAAATCTGTAAACGCCCTATTGCTTCTACCCTC 8954 30 100.0 36 .............................. TATAATACGTAAAATGCTTAGGTTTTCAGAAAGCTT 8888 30 100.0 36 .............................. TAATTTTATCAACAGTACTCAGTTTGTCATATTCCA 8822 30 100.0 35 .............................. TGAGCAAGGTCTCCTTCTTCTGCGTATTCACTTGT 8757 30 100.0 37 .............................. TCACCATATTGATGCACGTATTGGCTATCGCTGCAGC 8690 30 100.0 38 .............................. AGATTTAAGCTTGTCCATTAGATGGTTGAAAAGGTTAA 8622 30 100.0 36 .............................. TTAATGCGCCTTTGCTTCCCTGATAACCAAGTGCCA 8556 30 100.0 35 .............................. AAAGAAGTACCAAGCTTTTTATTTATTTTTTTCAA 8491 30 100.0 36 .............................. ATTTTATATAAATAATACAAAAAAAAGAAGTTATGA 8425 30 100.0 39 .............................. TGTACTGAACGGTTACTCCCTGATTTACGGTATTACCTT 8356 30 100.0 35 .............................. AAATCAATACTACTAAAAAACTTCCGCTTAGTCTG 8291 30 100.0 35 .............................. TGGTCTGGAGTACTGTATTGAGAGCATCTTTGAGA 8226 30 100.0 35 .............................. AAGGGCGATGAGCTGCAGGAAGAAATGGAACGTGC 8161 30 100.0 36 .............................. TTGGCTCAATAAACTGCTTTCGGCATTTTAATTCAG 8095 30 100.0 35 .............................. GAAGAACAGTTCCCGGAGTCAACAAGTGAATACGC 8030 30 100.0 37 .............................. CATAATATGGTTTTTGTGCTATAATCTCCTTATCAGA 7963 30 100.0 37 .............................. ATAACTTTTTACACCTTTCTAATTTGCGAATTTTTTT 7896 30 100.0 38 .............................. AAAAAGTACGCTCTTGGCTTTCAAAATGACTTCCTCAT 7828 30 100.0 37 .............................. TAAGTTGAGATAGAGTATCTGGTACATTTCCATATAT 7761 30 100.0 37 .............................. GGGTATTCACAGTGCCTTTTTGCAGATCTGTTATTTC 7694 30 100.0 36 .............................. AGAGCTAACGGTAAATACAGAGTGTGTATAGACATA 7628 30 100.0 35 .............................. AGGTAAGTATCAGAAGAAACGAGAAAGGCAAGAAC 7563 30 100.0 36 .............................. TAAATTTTAAATATGAATAATGCATAATAGAATATA 7497 30 100.0 36 .............................. CTATAAAACCATAGCCCTTTTTCCTGTGCCTCCTTG 7431 30 100.0 35 .............................. TACGCTGTTGCAGATGGCATTGTAAGAGTAAGTAA 7366 30 100.0 36 .............................. TCTGCAATACCATATTTGATAGCCATTTTCTTTACT 7300 30 100.0 36 .............................. TGTACAGCCACGGGTAGAAAAACAGCAGGAACTTGA 7234 30 100.0 37 .............................. ACTGTTGTAGGCATGTCCTTAAGTTGTACGATATATT 7167 30 100.0 35 .............................. TAAGCAATTGAAGTTGTGGAGATAATTCTTGTATG 7102 30 100.0 37 .............................. TATTGCGGGTAATATACCTATGAACGCACCTGAAACA 7035 30 100.0 35 .............................. TTTGCCCTAATAAACTGAATCGTAGATTGCTATAG 6970 30 100.0 37 .............................. AACATAACATCCGGTACATCAAGCTTGCATATTTCAG 6903 30 100.0 35 .............................. AAGTATATCAATAGTGTAATCATTATTTGTTCCTT 6838 30 100.0 36 .............................. TGCAATTGGAGCCGGGAGATAATACATTGAGATATG 6772 30 100.0 37 .............................. AATCAATATTCACATTCTGAATTCTGTATAATCTACA 6705 30 100.0 36 .............................. ATTGAACATCTGCTGATATTATCATTATCTAAATTG 6639 30 100.0 36 .............................. TTACAAAACTAAAGGAAGCTGGCTATCCGAAGTACT 6573 30 100.0 36 .............................. AATTTCTAACTTGTCCTGCTGAATTCTTGAATGTAT 6507 30 100.0 36 .............................. TCACATTCTCAGCCTTATAATTCATTTCTGCGCTGA 6441 30 100.0 38 .............................. GCCATTTTAACAATGCTTATATGTTTAATTTATGTTTA 6373 30 100.0 36 .............................. GCAGATAAAGTAGATATTATACAAATTAGCAATGAA 6307 30 100.0 37 .............................. ATAAAATAACAGAAAATATGAAGAACACCGGAATCAA 6240 30 100.0 37 .............................. ATGTAACCGTTGCGGTTACTTATGTTCGATTTGTTTT 6173 30 100.0 35 .............................. GAATCAAAACTCGGCAGTATATTTGATGGTTTTGA 6108 30 100.0 35 .............................. TTGTTAAACACATCCTTTGTCACTTTTCTATCTAA 6043 30 100.0 36 .............................. AAAATACATCTATATCCAATGCTGTTTTATCTCCAT 5977 30 100.0 36 .............................. AATTTAAAGCTTTATAATTACTTGAAACTATAGTAT 5911 30 100.0 36 .............................. TAGTAAAGACGAAGCTTATGCAGAAATTATAAACAA 5845 30 100.0 38 .............................. TATTTTGACAATGACGATATTATTCACGGAGATTTTAC 5777 30 100.0 36 .............................. CAATATGATAGTTACAGATCTAAATAATAAAGAATA 5711 30 100.0 35 .............................. AGACCTTATAACGATATAATGCCGGATGTATATTT 5646 30 100.0 37 .............................. TTACATTTTGGGGATTGGGTAATTATAACAAAATATA 5579 30 100.0 37 .............................. TAATCAATAGCGTAAACTGTATAATTTCTTTGATATT 5512 30 100.0 37 .............................. CTGCATATCAGTCTGTTCTCTCTTCTCTGACTGGTGC 5445 30 100.0 36 .............................. GAATTTAATTCATTAGAATCAAAGAACATAGACATC 5379 30 100.0 34 .............................. ATGATTGCTTAATGTACTACTTTTTTATGTACTT 5315 30 100.0 37 .............................. TTTTGTGCATGAAATAATACGTAAATGTTTGGTCAGG 5248 30 100.0 36 .............................. TTGCCAACAAAGCTCCGAAAATAACTGATTGTAATA 5182 30 100.0 35 .............................. TTGTAAGGCTTGCGGGTGTAGACCGCTTTTTAGTC 5117 30 100.0 36 .............................. CCGCTTTAACTTCTGCTATTAGTCCTTCAGATGTTG 5051 30 100.0 36 .............................. TAATTTAGATGTCGATAAGGCGGTAACTTTTTACTG 4985 30 100.0 35 .............................. ATAATTCTATATCTCACAGTGTGTGTAAAGTATCA 4920 30 100.0 35 .............................. AGCCATTGCTTTGTTTTGCCCCACAACCATTTAGC 4855 30 100.0 36 .............................. TGAGAATGATTTTGTTGCTATAAAGTGGCTTGATTC 4789 30 100.0 38 .............................. AGGATAGCAACAAGTATAGGCACAGCAGTCTTCAATGT 4721 30 100.0 35 .............................. TTCTTTGACGTCCTTGCCATTCATCACGGTAACGT 4656 30 100.0 36 .............................. CAGGTTGAATGCGGGAAATTGTGTTAGACCTTTAAA 4590 30 100.0 38 .............................. ATTATAGACCCTCAAAAGACAATGGATCGGGATGTCAA 4522 30 100.0 36 .............................. AAATCTTTTGTGTTTTCGTTGGCACGGTTCATGCAA 4456 30 100.0 36 .............................. TGACATGTATGATACCTATGCAAAAATGAGACGTTA 4390 30 100.0 35 .............................. ATTATTCAGATTGTCGTGTTCAGGACGGTTTTAAA 4325 30 100.0 36 .............................. ATGATACATTATACCATTTCACTACAAAAATCGCAA 4259 30 100.0 35 .............................. TCCGCTAATTCTGCTGCTCTAATGCGTTCTATACC 4194 30 100.0 36 .............................. AAATATAAATATGATTTTCTTAAAAATCATCCTCAT 4128 30 100.0 35 .............................. TAGATATTTTTCAGAAGTTTTGGTAGGTGGTGTTG 4063 30 100.0 36 .............................. CAGGCAGATACATTAATATATCTTCTGTACTGATTC 3997 30 100.0 39 .............................. CTTTGAGAAAATCCTTTTTTCGCAATTATTCCTCTTAAC 3928 30 100.0 37 .............................. ATGAATGGGTTGACGGTGGCGTGTTAAATATTTCCGC 3861 30 100.0 35 .............................. TAAAAAACTCCCGGGCATTATACCCGGGGGAATTA 3796 30 100.0 35 .............................. AATGCTTCTTCGAATAATTTTCCACCTCCCCCAGT 3731 30 100.0 36 .............................. ATAAGCCAACTCCTACGGATGCGCCTGTAAGAAAAT 3665 30 100.0 35 .............................. TAACGGCACTGTCTACAGGCTATTTACCCACAACA 3600 30 100.0 36 .............................. ACATTAAACAACCACAGCTTTGAGTATGACCATTTT 3534 30 100.0 37 .............................. ACGTATGCGAGAAAACCACATATTACAAACAAATATA 3467 30 100.0 36 .............................. TGCTCACCTCCAATTATATAACTAAGTATCATGTGT 3401 30 100.0 36 .............................. TTGTCTGTTATACTGTTTTATATCCCATGTATAACC 3335 30 100.0 37 .............................. TAACTTAGTACAATAAATCTTGCCTGTTTCATCTTCG 3268 30 100.0 37 .............................. AAGAAAAGGTGTATGAGCTTTTGAGAGGTGCATGATG 3201 30 100.0 37 .............................. ATAACAAAAGCTTGTGAATTGTTAAATAAACACTTTC 3134 30 100.0 35 .............................. CAAAAAGTCAGATTATAGATAATGTTAATATCTTA 3069 30 100.0 34 .............................. CAGCAAGTGCAAGAAAGCGGAGGATAGGCAACAA 3005 30 100.0 38 .............................. TATGTCAGAGGAGGATATAAATAATGGCAAATATTATT 2937 30 100.0 38 .............................. CATCATAATCCCTTTCATATTTGCTTAAATCAAGCATC 2869 30 100.0 36 .............................. TTTGGTTTCTGGTAACACTTTGTCGATTGCGGCGTC 2803 30 100.0 35 .............................. GTATATGCGTCTAATCCTCCCGAATAAGTATCCTG 2738 30 100.0 36 .............................. TTTTTTCATATTCTTCAATGGGAATATATGCGCTGT 2672 30 100.0 37 .............................. CTTCGTCCCCTACTTCTAAATCAGGTAAATCTTGATT 2605 30 100.0 36 .............................. TAGCAGTGGTGGTTCAGGTCCGGGTTCGGAGTATAG 2539 30 100.0 39 .............................. GCTAAGCAAGTAGAACTTCATGCTAAAAAGGTTGATACA 2470 30 100.0 36 .............................. TCACAATATAAACTTAATAAAACTAATGAATGCTGT 2404 30 100.0 36 .............................. TGCATCAGGTAGAGTTGTGGGGATGAGCGGTGATAC 2338 30 100.0 37 .............................. TAGCAGTGGTGGTTCAGGTCCGGGTTCGGAGTATAGC 2271 30 100.0 35 .............................. ATACCTTGTACGTTGAATTCAGTGATTAAGCCTTT 2206 30 100.0 36 .............................. TAATCTTTTGTGTTGGACGTTGAGTAGGTACCACCA 2140 30 100.0 36 .............................. GCTTCTAATGATAAAACAGTCCAAAAGACCTCTTTC 2074 30 100.0 36 .............................. AAGAATCAGTATGACAACAAATATCGGCTCTTGAGA 2008 30 100.0 37 .............................. ACAAATTCTTGTGCTGCTTCACTTGGATCAGATTCAT 1941 30 100.0 36 .............................. AGGGATGTATGGGATGGAAATGGTGATGCTCCTGAT 1875 30 100.0 36 .............................. TAAAAAAGTAGTAAACTTTCTAATTCTCAATCATAT 1809 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 142 30 100.0 36 GTTTATAGATTACCTATGAGGAATTGAAAT # Left flank : AGGAATTGAAATTGCCTACCACCTTGCAGAGCTGTCTCAACATCCT # Right flank : ATGCAGTTCAAAAGAAAATTGATGAATTGTCTTCTAGTGTTTATGCTAATCTAAAAATAGGTCAGCCGGCTCATCGAAAATTAGGTCAATATCAGTATAATTAAAATGAGAAGGAAAAGCAAACCAAATATATTTGAATATTAACCAAAAAGTTTAATATACAAGAGAAATTATGGTTAGTTGTAAATATGCCGCTCTGTGAATCAGAAGGAGGGCGTAGCCCGACTGGAGATTCACAGAGCGGCGGCTCGATTTTGCAACAACGCTCATTGAAAATTAGGTCATTTTCTTTAAAAATATGATATCCTTTCAGTATGCACTGAAAGGAGGATGTAAAGGAAGTGATAAAATTGAATCAAAAACAAAGAATCATACTTCAACACATTGATGGTATGAGTAATCGCAGCATTGCCGGTGAGGAATTGAAATCCTCATTTACTGCCACAACCAAGTTTGATTTATCAGTTTATAGATTACCTATGAGGAATTGAAATCTGAAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTATAGATTACCTATGAGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : NA //