Array 1 86305-85217 **** Predicted by CRISPRDetect 2.4 *** >NZ_SQMV01000163.1 Escherichia coli strain EETUKB158 NODE_1579_length_201372_cov_49.847008, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================== ================== 86304 29 96.6 32 N............................ GGTACACGGATATTCTGTCTAAAAGTTAACTA 86243 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 86182 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 86121 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 86060 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 85999 29 100.0 36 ............................. GCCCAGAATCTCTTTTAGCGCAACGATANNNNNNNN 85934 29 93.1 32 NN........................... GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 85873 29 100.0 32 ............................. TTCTCCAATCAGCAGTGCCCATCTGATATGCA 85812 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCAGCGTAAC 85751 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 85690 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 85629 29 100.0 40 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCNNNNNNNNNN 85560 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 85499 29 100.0 32 ............................. ATCGCTGGTCTGCGAAAACGCGCGCCCGAAGA 85438 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 85377 29 100.0 42 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGNNNNNNNNNNT 85306 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 85245 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ========================================== ================== 18 29 99.4 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTANNNNNNNNNNTGTTCCCCGCGCCAGCGGGGATAAACCGGACACGGATAACAGCTACCTGCAAAATTTAANNNNNNNNN # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 112706-112083 **** Predicted by CRISPRDetect 2.4 *** >NZ_SQMV01000163.1 Escherichia coli strain EETUKB158 NODE_1579_length_201372_cov_49.847008, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================================================== ================== 112705 29 100.0 37 ............................. TTATCGCACCGTGTTAAACCGGCAGAANNNNNNNNNN 112639 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 112578 29 100.0 32 ............................. CCGATAAAATGCAAAAAACGCGGCGTTTTTTG 112517 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 112456 29 100.0 37 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGNNNNNNNNNN 112390 29 100.0 32 ............................. AGGCATCGCATGTCGCCATTCCGATCGGGGAC 112329 29 100.0 32 ............................. GCGGACGGCAAAACAATCGGGAGTCTGGACAA 112268 29 100.0 67 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 112172 29 96.6 32 N............................ CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 112111 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= =================================================================== ================== 10 29 99.3 37 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.23, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //