Array 1 12591-12258 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEWZ010000004.1 Lusitaniella coriacea LEGE 07157 NODE_8_length_221558_cov_19.571000_(reversed), whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================= ================== 12590 36 100.0 36 .................................... TTGTAAGGTCCCACAGTCTTATCGGAGTACAGCGTC 12518 36 100.0 37 .................................... GGTCTAAGGAATCGTAAGGTCCAAAAGCGACCGTAAC 12445 36 100.0 45 .................................... TGGGGGAGGAGATGAGAGTAGCTATCAGTTGAAGCTTTCAGCCTC 12364 36 100.0 35 .................................... TAATGCTTTTAACGCGACAATTCCGTAAGCGGCTA 12293 36 80.6 0 ...........................A..TTTTCA | ========== ====== ====== ====== ==================================== ============================================= ================== 5 36 96.1 38 CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC # Left flank : ACTACATTTCTTCGTTCTTTCTCCAAGCTATCAGGTTATGGAAATCCCCCTTTCTAACCCCTCAGACGGGTGTCGATGCCCCAAATCGAGTTGGCTTAATATGCTTGTAATCCTTATCCTACCGAACTTTGAATGTCTTCAGGGTCGATCGATCTCGACTGATTTCTTCTCCTGGCGCTCCCAAATCCCTCGGATTTCGCTTTTTATTCTCCAGAGGTGCGCGGAGCGCTTTTTGATTGAAAATAAATATTCTAAAAATCGCTTTATCTCTTATCGGAAAGGTGTTTTAGGGAGTCAATGCTCAATTTTTGCCTCTGTTCGCGCACCCCAGCCAATCGCCGAAACCCTCATTCTTTCGTTGACCTGCGTGTACTCTATATGGGACATGGATTTGAGGGCGATCGGTTGCCCTTTGTGCAGGCTCGATCTATACTACCCGCCAGGGGTGCGTGAAATCGGCGCTCAAAACCCCTGCCCTGTCTGGTATCCCAGACTAAACA # Right flank : CTGTAAAAATGTCAAAAAAAAAAAAAGAGCTAAGTCCTAACAACTTGGCTCTTTTTCATCGGTTCGATAAGCTGAATACTTAAATCCAGTTTGCCAATCGTTGGTTGAGATCGGCAATACAAGCAGCACGTTGACCGGAGGTATTTGCCGATGTATCTACATAGAATTTAACCGTCCAACTGCCATTGCTAAAAATCCCTTCAATTTGCTCGCTTTGCAATCGAAAACGGGTCGCTTGCGATAAGTCAGGATTCCAATAGTGCGTTCTACACTGGCGAACGTAAGGACATTGGTCGGTAATGGTTTGTAAAAAGTTGAGAATTGGTTCTCTAGCATTTCCCCAACCGTGGTCTGTTAGGGACGGTTTTATTTTCCGAGGTGGGTCAATGGGAGGGGGTAAATATTCATTTTTACTGGCATCAAAGCGATTTTTAAACGTGTCGTGAAAAATTTGTCCGGTGGGAGAAAGTTCGATATAAATTTGACCGTCAACCTCAACT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 1282-1976 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEWZ010000015.1 Lusitaniella coriacea LEGE 07157 NODE_21_length_132125_cov_21.585676_(reversed), whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 1282 36 91.7 39 A...TT.............................. TTGCTGGTATAAATCTGCTATGCGGCATTAGCGTTCCTT 1357 36 100.0 43 .................................... GTCACGGAGTTTACGAGCGGCTTATTCAGATGCCCGACAGAGG 1436 36 100.0 36 .................................... CAGCGCTCATCTTTTCAGTAGGTATGACTATGACTC 1508 36 100.0 41 .................................... GATAACGGCGATTGCACTTATGTATCGCCATGTGACGGGAA 1585 36 100.0 35 .................................... GCCAGAAAGCCCAAGGCTTACCAAACGATCATGGC 1656 36 100.0 36 .................................... GAGACAACCCCAGACTATCGCTACCCGTTCGTCATT 1728 36 100.0 35 .................................... CGTTTGTCTAAACATTTTGTGTGTAATACACAAAA 1799 36 100.0 35 .................................... TGTTCATACCCAACAAATAAAAACGATTGTCAAAG 1870 36 100.0 35 .................................... AAAATGTCCATGACCGACGACGTTGGGGGCGACCC 1941 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =========================================== ================== 10 36 99.2 37 GTTTCCAACTAATCCGATTTAACCCAGTCGGTAGGG # Left flank : TATTACGATCGCGGAAATGCTTTGTCAGATTTAGGCAAGTATAAAGAAGCGATCGCGGACTATACTAATGCGATCGAACTCAATCCCAAAGACTCCGATTATTATTACGATCGCGGAAATGCTTGGTTTGATTTAGAAAGATATCAAGACGCGATCGCGGACTACACTAATGCGATTGCACTCAATCCCAAAGATTCCGATTATTATTACGATCGCGGAAATGCGTGGTTTGATTTAAAAAGATATCAAGACGCGATCGCGGACTATACTAATGCGATCGAACTCAATCCCAAAGACTCCGATTATTATTACGATCGCGGAAATGCTTGGTTTGATTTAAAAAGATATCAAGACGCGATCGCGGACTACACTAAAGCAATCGAACTCGATCCTGACTTCACTGATGCAGACTACAATCGCCGCATGGCTTTAAGCTTCTAATACACATTAAGCGTGAGTTCTAAAACGGAATAGGAGCGCAAGCATTGCGCCCCTACATT # Right flank : GAGTTCGTCTGACAGCCCAGACCCAGTAAGGGTTTCAGCCGCCGAATCGACGCACCTCTTCAAATTATAGTCTACGACTCCAAAAATTGCCAATTTTACACCCCTCAAATCCAGTCTGCGCAAGGCATCGACGCAGTTCAACGAAAAAATGCGGGTTTCAGCGATTCGGCGAGGTGCGTCGATTAGTACACCTTGAAAAGCAGAAAAACGACATACCCTTTGTCATGTAAGGCTTTGAGGCACTTTTGCGTTAGCCCTTCACCTCAAAAAAAACCATCGACGCACCCCTTTGGCAAGTGGGAGACGTGGTGACGCAGCGACGTGATGAGCATTATTCGCACACTAAAATTCATGCAACTTAATTGCTGAAAACTAGAAAGGAAAAGGGTTTTGGTGATTTTCTTTCTTTCTGCACCTCCAGAAAACCGCTCGACGCACTCCAGAGGAAACCCCCTTTTCCGACAATTCAGGCTATATTCACAGCCTCTCTCTCCCCCAGC # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCAACTAATCCGATTTAACCCAGTCGGTAGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.30,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 2 34641-35463 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEWZ010000015.1 Lusitaniella coriacea LEGE 07157 NODE_21_length_132125_cov_21.585676_(reversed), whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 34641 36 100.0 39 .................................... CTCTCAGTGATTGACCTGACAGCTTTCCTTAAGAGAACC 34716 36 100.0 35 .................................... ACTAGGGTAAATAGTAAAGTGAACATCTGACAGTA 34787 36 100.0 38 .................................... TTTACTCCCAAACACCTGCGGCTCTTCCTACGAAGGGT 34861 36 100.0 36 .................................... ACTATGGGCTGTGGTACAACCTCGGTACGGTGGTTC 34933 36 100.0 34 .................................... TTTGTTCGTTACGATCACCTGCCGCGGCTTCCGT 35003 36 100.0 36 .................................... GGAGACTTTGCAATGACGAGCAATTTCGCGATCGCT 35075 36 100.0 34 .................................... TACTTCTGCAAGTGAAAATCGGCTCAACCCTCGA 35145 36 100.0 35 .................................... TGATTACAGGGGTAAGACTCCGTGCTTTGAACGAT 35216 36 100.0 34 .................................... GAAGTCGGATCGATTTTCTAACGGGGTGCTGGAG 35286 36 100.0 35 .................................... CTTATATTTTGCGCCGTGGGCGTTGAGCGATTGGA 35357 36 100.0 35 .................................... TCACCCCATCTTGCCGCACGCAAAGAGAAGTCACG 35428 36 88.9 0 ..A....A.........A................G. | ========== ====== ====== ====== ==================================== ======================================= ================== 12 36 99.1 36 GTGCGATCACCTTAGATGCCGTAAGGCGTTGATCAC # Left flank : TCGCTTAATCGACCAGAAAGGCATAGGACATCGCGTAGGGCGATCAACGCCCACCAGCTATAGGTTATGGCTTGTAAGATCGTGTACTCTTAACTGTGTAGCGCTATGCGGAACGACTTTAGGGCGGGCATTGCCCGCCAAACAAAAACAACTTCCCCTCTCCGGGCGCAATGCTTGCGCCCCTACACCCTATTCTCCCAGGCTCATTGTTGCAAATCTCCGATCCAATCTCTCGCTGTTTCGCATTTTTTAGCAAGCACCTGCGTATGTGTCGGGTCTTTAGTCCAATTTAATTCTGGAAAACTAGATATGATAAGGGTTTGGAGCGTTTTGAGGGAGGTTGAGGTGCTTGCAAAAGCTTAAAAGCCAGAGTAGGTAAGCAATGTAGCGACTCAAATATTTGGTCAAAAGGGGTTTTTGGGCTAGAATTAACTCAGTTGCTTGGGGTGCTTGCAAAGTCGTCTCAGAGCGCTTGCCTGGTAAGGCTTTCAGACCCCGCA # Right flank : CTGTAAACCCTTCGTTCTCACTAATTAAGAATTGCCTTCAGCAACTTGATATATTAAGCTAAAACACATCCAAATTGGGTATCGGGCGCACTGAGTCAAAGCCGTCAATCCGTCACCCCGTTTCCCCAATTGGTAATTGGTAATTGCGAATTGTGAATTGTAACCATGTCAGCCTCAGTCACAATTTAAATGCCTAGCAGCTTACCTGGATCGCAAAAAATGCCACAATAGACTTCAATAAATGTTAATAACAATTACAGAATGGGTATTAATTGTTTTACTCGTACTGATCGCGATCGTTTTCATTGGTTTTTATCTGCGAGGCGCATTTCGCGATCGCGTTCGATACGAAGTTAAAAACGCACCTTCCCCAGACGATCCTTACTTTCCCTATATTTTAGCGAGTACGACTAATTCTTTTGTCACGAAGGCATTTATCTCGGATTTCTGGAACGAACCCAGTCAAATTCAACAAGCAAGAATCGACGCGATCGCTCAAG # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCGATCACCTTAGATGCCGTAAGGCGTTGATCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 1 35528-35856 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEWZ010000001.1 Lusitaniella coriacea LEGE 07157 NODE_3_length_297103_cov_20.691783_(reversed), whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 35528 36 100.0 34 .................................... ATTCAGTCCTCAATCCGCTCCATCCGTTCTTCCA 35598 36 100.0 38 .................................... ATTCCTGCTCAATATTCAGGAGAATCAAGATGAAAAAA 35672 36 100.0 42 .................................... TCTCAGAATATGGGAAGAAGTTACGTATGGACTTTGTAAATC 35750 36 100.0 35 .................................... CCAGGAAGAGGCGGATAGCTGCTTCTAGGTTTAAG 35821 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 5 36 100.0 38 GTTTCCAACTAATCCGATTTAACCCAGTCGGTAGGG # Left flank : AATCCGGCTGGCTGAGAAACGTTTTACTCCTAAAATAATACTGCTCCAAAAAGCTTAAAACTCGATTGGGACGCAAACCAAATTTATAATAACAATGAATTTTTAAGTCCCGGCGACGTGGATAATTAACATTATTCAGATGGCTGGTTGTTAGGATGGGTTGAAAAGACTCTGGGAGACGATTGATAATATTTTCAAAATAGCGATTTACGCCGCCTGCTGCTTGAAATTTATAAATCGTTCCATCGTAAAGAATTTTCATTTAAACTGTATTTTAGGTTAGATTCTGTAGGGTGAGTTAGGTGGAAATTCGATAAATCTCTCCATTCTTAACTTTTCTCTTCGCCGTAACCCACCGAACCTAATTTTCCTGATTGCTAGATATAAAAAAGGGCGCAAGCATTGCGCCTCTACTATTTTAAATTATTCTGGTTGTGCTTTTTCAGTTATCAGTCAAATTGGTCTAACTTTAAAGACCGACAGGAAATCGAGAAATAGCC # Right flank : GAGTTCGTCTGACAGCCCAGACCCAGTAAGGGTTTCAGCCGCCGAATCGACGCACCTCTTCAAATTATAGTCTACGACTCCAAAAATTGCCAATTTTACCCCCTTCAAATCCAGTCTGTGCAAGGCATCGACGCACCTCAACGAAAGAATGCGGGTTTCGGGGATTTGGCGAGTTGCGTCGATTAGTACACCTTGAAAATACAAAAACCACTCAAGCCTATAGTATAAAAGGATTTCAGCCACTTTTTCGTTAACCCCCCAACCGAAAAACCCCCATCGACGCACCCCTTTGGAAAGTGGGAGACAAGGCGACGCGGTAACGCAGTGAGAATTATTCGCACTCTCAAATTCATACAACCCAATCGCTAAAAACCAGAGAGGACAAGGGTTTAAAGTATTTTCCTCGGTTGCACCTTCAGACAATTAATCAACGCACTCCCATAAAGGAAACCCCCTATTCCGAACGTCATTCCGCGAAATTATGACTGAGAATCTTGGTT # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCAACTAATCCGATTTAACCCAGTCGGTAGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.30,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 47848-47441 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEWZ010000024.1 Lusitaniella coriacea LEGE 07157 NODE_40_length_84080_cov_20.338225_(reversed), whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 47847 36 78.4 39 .A.AA..GA...CA..-.................... TTCGCACAAAAAATCGGACGGGCTTAATTCCCGTCCGTA 47772 37 94.6 39 ........T.........T.................. GGGTTGCTATCCCTACCTGCGCAAGTTCAACGTGGCAAC 47696 37 100.0 36 ..................................... GTCTGCTATTGGTGATGAAGGCTATTGCTGTCTTTT 47623 37 100.0 37 ..................................... AAAAGGACGCATCGGGTTCAGGTGATTTCTGTCCAGT 47549 37 100.0 35 ..................................... ACGAGAATCAAAGAGTAGAGGCAATCTCTGACGAC 47477 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 6 37 95.5 37 GTTTCCAACTATTCGACTCCAACAAGTGGAGTGCAAG # Left flank : AATAACATCATAATTGCGCGATCGCGCGACTTCTAATAACCCCGACACCAAACCCGCTTTCGGCTGCGTATCCGCATCAATCCCCAATATCCACTCACTCTGGGGAGAACTGTGCAAAAATCCATTATGCAACGCCCAAGGACGACCTACCCAATCCGTTGGTAAAGGAGGATCGGTTATCAAGCACAGGCGAGGATCTTGGGTTTGAGCTTCTTTGACTCGTTCCTGCGTGCCATCCTCAGAACGACTATCCACAACAATAATGTCGCGAATCTCCTCGCTTTGCTCCCTCAACCCCTCCAAACATGGGCGAATGCGCTGTTCTTCATTCAGTGTCGGTACAATTGCGCTCACCGTTCCTTTTTGGTTTCCCAAAGGCAATTGCGGTGCGACGGGGGAACTGCGCCTTGCCCCTCGAAACAGGCGAGATAGGGCGATACAAGCTGCGGGAATCGTTAAGAGTAAAAGGATGAGCGTCATTTTCAGTTATCAGATATTCA # Right flank : TCCGCCCCTGGCAACCCCCATGAGTTAAGGGTTCTGGAGGCAGTTTTGGCAGGAGTCTCAAAATCCCGAAAAAATTCCCGGTTTTTTGCCTGCCCTTCCCGCAATGAGAAGCTCAAACACCTTGAATTATCTAGGTTCTGTAGATTTGGCAGCACCCCCAGGGTTTTTGACCCCGCTTGCCCCTGCCAAAAATTGGGATGACTTTATCCTAAGCGAATTCCCCGTTCCTGTCGAGTGGGCTAACCGAGAGTGCGGCGTTATTCAAGCAAGCTTGGGCATCAAACTGTGATTTTCCGGATTATATCAGTTTCGAGAAAGCGACTGACGATCGCGGTTGGTCAAACTTCTGAATTTTTGTTATCTTATACGTAGTCATAACGACTTTACTTAAAGGAGAAAGATTAATGGTTAAAATCGTCGGTTTAAATGGCAGCCTTCGCCCCGATTCCCATAGCGCCCAAGCCCTCCAGCAAGCCGCCACGAGAGTTGAAGCCCTTGGC # Questionable array : NO Score: 3.04 # Score Detail : 1:0, 2:0, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCAACTATTCGACTCCAACAAGTGGAGTGCAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.60,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 1 65941-66407 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEWZ010000027.1 Lusitaniella coriacea LEGE 07157 NODE_45_length_78254_cov_20.352631_(reversed), whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 65941 36 100.0 35 .................................... TTTCTACAGTAATATACTGAGTACTGTTATTCTTG 66012 36 100.0 40 .................................... AGTGAAAGCCATTTTGTAACTCCTAGAATTGTTTTGTTTT 66088 36 100.0 33 .................................... TCTTACCTTTTCGGTCGCCGATCAGCATTAAAC 66157 36 100.0 36 .................................... TATCTTCAAGAGATTTTTTCAACTCTTTTGTTTCAA 66229 36 100.0 35 .................................... CTTTTTCTTCAACACATCCTTACACGCCTCTTGCG 66300 36 100.0 36 .................................... TGTGTCACCATCACAGCTCGTGTACGATTGGTAACT 66372 36 88.9 0 ......T.......................AA...T | ========== ====== ====== ====== ==================================== ======================================== ================== 7 36 98.4 36 CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC # Left flank : CTATTCCAGAACCCAAAAAACAGCATTGGATGCGTGCAAGTTGATGTTTTTATTGCCTTCTCCCAAGTTGGTGGAAGGGGGGATGTCGATAGATATTTGGAAATCGTGACAAGGGCAAGAAAAATAATGAAAAGCTCTGCTACTACTGGCTTTTATCGATTTTTGACAGCATTTCCTAAGAATCGACGCACCTCCTTGCAAGTTAAGGACAATAGGGTGCGTCGATGGGTTTTTTGGGGTCGAAGTGTTAACGAAAAATAACCTCAAAGCCCTGTATGACATGGGTCACAGCGATTTTTCCATTCTGAAGGTGTACTAATCGACGCACCTCGCCGAATCGCCGAAACCCGCATTCTTTCGTTGACCTGCGTCGATGCCTTGTCCTAACTGGATTTGAGAGGTGTAAAATTGGCAATTTTTGAAGGTTCAGACTATAATTTGAAGAGGTGCGTCGATTCGGCGGCTGAAACCCTTACTGGGTCTGGGCTGTCAGACGAACT # Right flank : TAAAGTAGGGGCGCAATGCTTGCGCCCCTATTCCGTTTCAGGACTCAACGAAAAAAGCCAAAAATTCTAATATAGCGACGGACAGATGAGTTCTCCCAATGTCCTTCGGGCGAATGCAATTCGCCCCTACAAAGATATGTCTTGATATATCCTACTTATTCTTTGACAACCTCCATCAAATCCTCAATCAGCACATCAAGGGAACGTGCAATCTTCTGAATTGACGTGAGATCGACAGTTGCTAATCCTTCTGAACGCGCATAGTGTCGAACTGTACTGTACGGAACTTCCGCGCGATCTGAAACATCTTTAAGCGTCCAACCCTTTTCCTGAGAGAGTTCTCGTATTCGGAACCGCACTAATCCCATTGCTCTCTTGACAAACGATAAGTACTTATCGTTTAATAATTAAAAACAACAGCGATCGCCCTCCGACGTGACAAATCTAAGAGCGAACGCCTTCTTTCAACAATCCACAAAACGTGGAAAGGATAATCCTAT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 55448-54612 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEWZ010000034.1 Lusitaniella coriacea LEGE 07157 NODE_61_length_57774_cov_19.254428_(reversed), whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 55447 37 100.0 34 ..................................... ATAAACGGAATCGATGCAGGCTTCGACAATTTCG 55376 37 100.0 34 ..................................... AAAAAAGTTTTTGGTAAAATCCTTGACCTAACAA 55305 37 100.0 34 ..................................... CTCTCATGTACTTCGTCTTACAGGGAAACCCTAA 55234 37 100.0 35 ..................................... CTTTCTGAAGGTAGGCTTAAGCAAGCATCTCGACA 55162 37 100.0 39 ..................................... CGGCGGAATGGAGGGAACGGGTTTTTTGGGTAGGTTTGG 55086 37 100.0 38 ..................................... CTACTTTGGCTAATTACAAGCCACCGTAATGTTTTCGT 55011 37 100.0 36 ..................................... AAACATTTAAATCCAAAGGAGCTACTTCAATGACCG 54938 37 100.0 37 ..................................... CAAAAGTTTTAAATAAACCTTCTACCGGATATTCTTC 54864 37 100.0 34 ..................................... TATCCCTGACCAAATGCTTTAGCAAGTTTTTTAT 54793 37 100.0 35 ..................................... TTTCTTGGGGATTGTTCGCGATCGCGGTAGGAAGT 54721 37 100.0 36 ..................................... ATGAGGAGAAGCTTTTTTCGAGGCTTATTTTTAAAT 54648 37 97.3 0 .............................A....... | ========== ====== ====== ====== ===================================== ======================================= ================== 12 37 99.8 36 CTTTCATGGCTTCTTCGGAAGCCGAATTATTGGAAAC # Left flank : CCAGCGTCTCACAGGCAGAGGGGGGCGGTAACGTTTCAACCGAGTCCGCTTCCAACTTCTGCACGATTTTTTCCAATCGCTGTACGGTGTCGCGTAGAATCGCGATGGTTTCCGGTTGAGATTGAGATCGCGCGATCGCGTCCGGTTCTTGATTTGTATCCGACATGAGACTCCCTCCGAGACAACATCAAGACGATAAAATCCCCTAGGACAAATTTATCACTTCTGCCTCCCCTTACTGAGCGATCGCCAACCGACGATCGCATTCAACAATTTTTGGCGGGGGATAGTGGGGAAATTGAAATTTTTCAAAAATCGACCTCAAACCTTGACGGAGACTGCCATTGCGCGATCGCGCTCAAAAAATCCCCCGCCAGTTAGATGGTGTAAGGGTTTCAGCCGTTTTTACTCAATTTCTCTTGCCGCGCGATCGGGATTTTTGAGAGACCTGCCAAATCTTGTGCTACGATCCTTACCAGAAAGGCGTTTTACAAGGCGGA # Right flank : GTGCTGAAGCAGACATCGGGTAGGGTGGGCAACGCCCACCAGCTATGGGTTATGGCTTGTAAGATTGTGTAGTCTTAACTTTGTAGCGCTATATCTTTAAAAAGGCTTCTTCGGGAGCCTTATTTTTTTGAACTTCACGTATCATATAAACGAAATGCTCAAAAGCCGAATCTACCCAAAAAAAAGTTCGACTGATTAGTTCTTGTGTTCTATATTGCTAAAGTTTCTCCCTTTCTTTGTCGGCGTAGGTTTGCCCCTATTCCCTGTTCCCTGTTCCCTGTTCCCTATTCCCTCGCCGCTAGGCGCTGATAACTGATATATGAAACGCCGCAACTTCCTACTTCTCAGCTTTCTTGGCAGCTTCGGTTTAACCACCTGCACCAAACTCTTACCCCACGACAGTCAAGAAACTGCCGTCCGCGCCAATAGTTCCCCCTCTCCTTCTTCCTCTTCCGAAGGCAAACCCTTACTGCGCTTCGTCTCCGTTGGCGACACCGGAA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCATGGCTTCTTCGGAAGCCGAATTATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.00,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 4503-5055 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEWZ010000050.1 Lusitaniella coriacea LEGE 07157 NODE_84_length_29390_cov_19.527697_(reversed), whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 4503 37 100.0 34 ..................................... TCTAACTTCCCAGAAACAACGCCAGCCCCAACAG 4574 37 100.0 40 ..................................... TTGCGCCAGCCCGGAGAAGAAAGCTTTGATTGCCGGGAAA 4651 37 100.0 35 ..................................... AATACCTCCCCCGTCGATAGCGTCGCCAGAGATTT 4723 37 100.0 38 ..................................... CTTTGCTCTAACCCGATTGTGGCTCATGGGTCAAGGGA 4798 37 100.0 34 ..................................... GTGCCACTGAGGTTTGCGCCAATGAGGTCAGCGC 4869 37 100.0 42 ..................................... AGGTTCAGTATCCCTCTTGAAACAAAACCCCCAAACTCCTGC 4948 37 100.0 34 ..................................... CCCTGTCTAGGCTGGAGTCATAGAAGTATTTTTG 5019 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 8 37 100.0 37 GTTTCCATTAATTCGACTCCAACAAGTGGAGTGCAAG # Left flank : GATTCCACTCCCCTCCGGTCCCATTACAAAATACCGTCACAAACCTTTCTTCTTGTATGAATCTTTCTACTATTTCTTGAGGGTCTTCTAGCTTGTCGAAGGGTGTAGCTAAACTGTTTGCGCGATCGAGCAACAATCGCGTATTAACTTCATCACAAATGTGCTTGCTTTTCAATCGAACAGCAACCCAACATCTCTCCATCTCTAATTGCTCACAACGCAGAGCGAGTTCAAGCCGGACTCTATCAATCCATTCTTTTGGAAATACTCCATCCTTAAACTCTTTCGACCTGAAATCAAAGTTCAGCGTTACTTCATAATTCGCTGCTTCTTCTTGTGCCTCTACTCCCATCCCTATTCTTGGAATCCAGACGGAAAACCATTCCTCGCTGCCTGTATCTCTTACGGCTTTAACAATCCCATCAACAACTTGCTCTATAGACTGACGCATGGATCGAATGGTAAAAATTACACTTTGATCTTAGCTGTCAACTATATTT # Right flank : GTCTGCCCTTTATAACCCCCGTCAGCAAAGCTTTCTGGAGGCGTTTTTGGCAGGAGTCTCAAAATCCCGAAAAAATCTTCGGTTTGTTGCCTGTCCCGATTGCAATGAAAAGCTCAAAAGTATTGAGTTTTCTAGGTTCTGGGGTTTTGGCAGCGCCCCAGGGTTTTTGACCCCGCTTTCCCCTGCCAAAAATAGCATAGCGCGATCCTCAGCGAATTGCCCATTTTTTTCGAGTCGGATGGTGGGGAAAATGTTGTTCGTCGCAGTCGGAAGAGAAGATTGCAAATATATTGATATCAAATTCCCCATCTCCCCGTCACCCCGTCTCCCCATCTCCCGGTCACTGAGCGTGTCGAAGTGCCATCTCCCCATCTCCCGGTCACTGAGCGTGTCGAAGTGCCGTCACCCCATCAATCCTAACTTGGCGATTCAAGCAAATTTTACATGAGGCGTTTCCGGATTGTCGCACTGACGTTGGAATAACTGAATAGTTTGATGAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTAATTCGACTCCAACAAGTGGAGTGCAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.90,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 82106-82508 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEWZ010000002.1 Lusitaniella coriacea LEGE 07157 NODE_6_length_242598_cov_20.761221_(reversed), whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 82106 36 100.0 37 .................................... CAGCTAGCGGGGCAAGACCAAATCAGTTTGCGGTATT 82179 36 100.0 43 .................................... TCCTTTTTCCTCTTTTCTTTGAAGAAGTTTACGCTTCCAGCTA 82258 36 100.0 32 .................................... GGTTCTACTGTGCGGTAGGCTCGGTATTCGCA 82326 36 100.0 41 .................................... TTTCATGAGTCAAAGTCCTTGTAAACTAATGTGTTCGGAAT 82403 36 97.2 35 ...............................A.... TCGGTGTGGTGCTACTTTGAGCGTTCCCACTGAAA 82474 35 75.0 0 ......C..C.....T.....G..A..A..-...CG | ========== ====== ====== ====== ==================================== =========================================== ================== 6 36 95.4 38 CCCTACTGATTGGGTCAAATCAGATTAGTTGGAAAC # Left flank : GGTTGAGGAATTTTGCGAGCCATTGGATCGAGTTTAATCAGTAGGGTGTGGGCTTTGGCTGACACGGAGAAAGAGAGACACGGGGACGCGGTGATGTTTTGTGAATACTGGTTGAGAAAGAGCAAAATTTGCCATGAAAGTAGCTCAAATTCAGCAAGTTGAAGGAATTTTCGAGTGTGAGTACATTCTTCATTGTATCTTCCACTCTCAAAAAAGGTGCGTCGATAGGTTTTTTGGGGTTAGTAGGTCAAGCTGGAAGTGCTTAAAAGTCTTTTATAATATGGGTTGTGGCGTTTCTTGTCTTGTGAGAGTGTACTAATCGACGCACCCTGCGCGATCGCCGAAACCCGCATTCTTTCGTTGAGGTGCGTCGATGCCTTGCCCAGACTGGATTTGAGGGGTATAAAATTGGCAATTTTTGGAGCGACGGGCTATAATTTGGGCAGGTGCGTCGATTGGGCGGCTGAAACCTTTACCAGATCTGGGCTGTCAGACGAACT # Right flank : GTAAAACAGGGGCGCAAGCATTGCGCCCCTACCTTTGCTAAAGAAAAATTTTCAGGTACTCAAAAGAAAGGAAATCTATAGCAGTTGCCAAAACAGTTAGGACACAGCAAAAGCACCAAGCCTTTCCCTTCTGCTCTCTGCCCTCTTCCTCCTGCCTTTTGCTATATCATGCGCGAACCTTCGTGCGCTTCAACTTCTGCGAGTAGAACGAAGCCGCCTCTTCCCCCCTGGCGCATTCCTGAGCGAATTTAATCAAATGGTGTCCCACCAATCCAACGTGAATTAACCCTTCAATTTGACCCGTTTTCAACTTTGGATACGCCATTTTCCAAAATGTTTGGCGATAACTGCCCAGTACGCCTATCCGAAACAGAATATTGCCCAAGATCGTTAATCCTTTCCGAATATTCTTTGCAGACACCCGCGCGGGACTGTTGGGAACCTTAATCCGATTGGGATAAGTATGCTCCATGTTGTAAGCAAATCGCTGATACAAAAAC # Questionable array : NO Score: 3.03 # Score Detail : 1:0, 2:0, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTACTGATTGGGTCAAATCAGATTAGTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.80,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 201619-201945 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEWZ010000002.1 Lusitaniella coriacea LEGE 07157 NODE_6_length_242598_cov_20.761221_(reversed), whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================= ================== 201619 35 100.0 39 ................................... TTTTTGTAATCTTAGTATCGCTGCCGGCGAGCAGTGCCG 201693 35 100.0 37 ................................... CCAACATCACTGTTGGAACTGGTTCCGCAGCTGCTGG 201765 35 100.0 39 ................................... TCGTTGTGTGTGTAACACACAAAAAGCCCACGTAGAAGC 201839 35 100.0 37 ................................... AATTTCAATGGGAAGGAGTCTCCATTGAGGCAAAAAA 201911 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ======================================= ================== 5 35 100.0 38 GTTTCCATTAATTCGCTTTTCCCCGAAGAGAAAAG # Left flank : GAATAGGGCGATTGGGTTGCCCCCACCTCCTCCCGAAGAAGCGCGATCGCCACACAGTCTTCTCGTTCCATCGCCTCTCTCATTTGCGGTAGGATTTCCCCATTCAACACCTCGTCCGCATCGAGAACCAAAACCCATTCCCCCAGAACGTTCTGCAACGCCTCATTCCGCGCGGCGGAAAAGTCATTTCCCCACTCAAACTCGTACACCCGCGCCCCAAATTCCCTTGCAATTTCCACCGTTCGATCTGTCGATCCCGTGTCCAAAATCACCATCTCATCCACAACATCCTTAACGCTATGCAGACATTGAGGGAGAGAGTCTTCCTCATCTTTGACAATCGCACACAGACTGAGCTTCACGGACACCGGCGATCCTCCTTCTTGACTGAAAACTGGAATCATTGCTTTTTTAAGACGGTGAGGATGTCAACAATAGCAAGCTCCGCAAATTTTATCCAGTTAATCAAAAAGCCGTACTTTCCAGTACGACTTTGCTCA # Right flank : GGCTACCCTTCTAGAAGGCTGACTCTGTATACATTATACACCCCCTTTTCTGAGGCATGGCAAATTAGGGGCAAATAATCGACACAAATTCTCAATAATCAAGAGTTCGACCCTCCTCAAACCCAGCCCCAGAGCGGCAGCCGAGGCATCCCACGAAAGAATGCGGGTTTCAGCGGTTTTAAAGATGCCATAGCAAACGGAGATAACAGCAGCAATAATGAACAAAAGACTGATAAATCATAAATTACGAAAGCTTAGAGTTGAAATTGCTTGATTTTACCGAATCCCTCATTTCCTTTAAGAATACTCCAACCAATAAACCATCCCACAACCTATTTTTCCTCGCCCCGTCACCCCGTCTTTGTCTAACCCAATTGAACAACTTTTTCTTTGGGGTACTCTAACACCTTGCGGTAAACAATCTTGTCATCGCCTGTTTCGTAGAAATCGCGAATTCTCGCTTCCTCGTTGTAAGCGCACTTGCGGTAGAACGCCCGCAC # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTAATTCGCTTTTCCCCGAAGAGAAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.00,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 3 230821-231712 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEWZ010000002.1 Lusitaniella coriacea LEGE 07157 NODE_6_length_242598_cov_20.761221_(reversed), whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 230821 36 100.0 37 .................................... GAGTAAAAATATTTGAACATGATTGACTCTTCTCAAA 230894 36 100.0 35 .................................... TATTTCTTGAGGAGAAAGCAGGGTTTCTAATTCTG 230965 36 100.0 35 .................................... TAAGACTAAACAAAGTTCTTTGGCGGTAAGTGCAG 231036 36 100.0 34 .................................... CTTGCTAATAAGTATGAAAAAAAATTGGTTAGTA 231106 36 100.0 38 .................................... CGCCGCACAGGGGATTTGTTTAAATCGAACCCGATCGA 231180 36 100.0 34 .................................... TCTACTTCAAAGTAAGCCAGAACCATTGAGGCTC 231250 36 100.0 36 .................................... ACAATTGGCAGTGCTGCTGCCAATGCTGCTGCTAGT 231322 36 100.0 34 .................................... GAGAAGAGATCGTTCTCTTTAATGGAAACTGCTT 231392 36 100.0 36 .................................... TATGCAGTCGAGGACTTCCTCGCAATGCAAACACCA 231464 36 100.0 34 .................................... CCTGTTCCTTTTTAGTTTGAATAAAAAATAAATT 231534 36 100.0 34 .................................... GCGAATGACTATACGTTGGTTCAACAAACCGGAA 231604 36 91.7 36 .......A.....A....................G. GAAAATGCTGGGGTTAGCGCAAGCCCTGGAACGCGA 231676 36 88.9 0 ...T...A.....A....................G. | A [231689] ========== ====== ====== ====== ==================================== ====================================== ================== 13 36 98.5 35 GTGCGATCACCTTTGATGCCGTAAGGCGTTGATCAC # Left flank : GTGGATATGGTGGTTGTTGCCTCGATTAATCGGCTTCAGTGGGATGCTAAGGAAGATTTCGAGGTACGCGGACAGCAGGTTTGGCTGTCTCAACGGGGACGGGAGAAGTTGCGCTGGGAGTTGGAGAAAGTTCTAGCAGAAGAGGACGATCTACTGCTGATTCGCCTTTCCCATCAATGCGTGAAAGGGTTGCCGGGGTACAATCGCCCCAATACTTGGTTAGTCGATGAGGCGGGTTTTCGCGTTTTTTAGCAAGCACCTGTGCTTGTGTCGGGTCTTGAGTTCAATTTAGGGCTGGAAAGCGAGATATGGTAAGGGTTTGGAGCGTTTTGAGGGAGGTTGAGGTGCTTGCAAAAGCTCAAAAGCCAGAGCGGATAAGCGATGCAGCGACTCGAAGAGTTGGTCAAAAGGGAGGTTTTGGGCTAAGATCGATTCAGGTGGCTGGGGTGCTTGCAAAGTCATCTCTGAGCGCTTGCCAGGTAAGGCTTTCAGACCCCGCC # Right flank : CGAGAGTTCGCGATCGCGGAAGAGCCAGCCAACTGCATACTCCTGCCTTTTGCAATAGCTTTCCAAGTCAAATGTGTCGTAGCTTACCGGGCGGCTATAACTTAACCGAGCAGGATAGTTTATCGATTGGGTGACTCTTAGCCGCATCCCACAATTCATTCTCAACAATAGAAACATTGCGATAGAGGTTATCAATCGTTTGTTGTCCTATTTTCGTCGCTTGAAGATAGCGCAAACCATCTTTGAGATAGGGATGAGCAACATTCCAAAAAAAATTGGGGTAGTCTGCGCGCAACTCCCCAAGATTTTTGTACCCTAATCGTTGATTTGTACCATTTTCCTCAAATTCGCAGTATAAGGCGGGGAGTTTTTCTAGGTATTTTGGATCGGCGAGTTGTCCGATGAGGTCTGCCGCACGCGCTAGACTGGCGTAATTCCCCGTCTGTTGGTAAGCTTCGTCTTTGGGAACGGGAAAGCGCGTCAACTCAATGTTGTGCTGT # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCGATCACCTTTGATGCCGTAAGGCGTTGATCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-5.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //