Array 1 53790-52236 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAFYZ010000028.1 Catenulispora pinistramenti strain NL8 NODE_28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 53789 29 100.0 32 ............................. CGCTCCAGCCGATTCCGTATCTCTGACCCTGA 53728 29 100.0 32 ............................. CGCAACGGCTCCCGAATCACCGGGGCGGTCGC 53667 29 100.0 32 ............................. CAGCGGGCGAAGGCCCGACAGCAAGCCACCGG 53606 29 100.0 32 ............................. GCATCGGGATCGGCGAGCATGTCGTTGACCTC 53545 29 100.0 32 ............................. GTTCACGGCGGGATCCTCGCGGGGGCTAGGTC 53484 29 100.0 32 ............................. GGGCGCAGCCAGTACTTGGTGGTGCTGCTGCC 53423 29 100.0 32 ............................. GTCTGCTCGACGCTGATCGGCGTGTTCCGCGG 53362 29 96.6 31 ............................T ACGACTGCGAGATGATCCAGGGCGCCGTTTT 53302 29 100.0 32 ............................. TCGGAGCGGGAGGTCTTCAGCTCGTGGACGTC 53241 29 100.0 32 ............................. GCCCAGGCCGCCGCCGCAAAGGCGCAGGCCGA 53180 29 100.0 32 ............................. GAGTCTCCGTGTCTGCACCGTCACCGGCAACG 53119 29 100.0 32 ............................. GTCCAGGACCAGACGATGAACCCGGCGGCTGT 53058 29 96.6 32 ...................C......... TGGTCGCGGTGCCGGCCGCAGAAGTAGTGGTC 52997 29 100.0 32 ............................. GTCGCGTCATTTCGCATCGCCTGTGCGGTCAG 52936 29 100.0 32 ............................. AGTTCGTCGAGGGTGACCATCAGGCGCTCCTT 52875 29 96.6 32 ......C...................... CGGACGTTCAGGCCGGCCGCGTGGATGGCGTC 52814 29 100.0 32 ............................. TCGCGGGCATCGCGTCGGCGTGTCGAGTTGGC 52753 29 100.0 32 ............................. CAGTCCTTCGCTTCGAGCAGCTTGCGCAGGCC 52692 29 100.0 32 ............................. AGACCAAGAAGCGTCTCGGCCGCTCCCCGGAC 52631 29 100.0 32 ............................. ATGATGGCGCCCGCGCCGTCGGCGACGGAGAA 52570 29 96.6 33 ............................T TCACGGTCGGTCCGGACGGCGGCCGGTTGCGGT 52508 29 100.0 32 ............................. TCGAGATCGTTCAACAGCTTCAGAGCCGAACC 52447 29 96.6 32 ...........................T. CCGGAGGCGCCCGCCGCCACCGACCGCCAGGA 52386 29 100.0 32 ............................. ACGTCCTCGAGCGGGAGGGGGCCGAGCAGCTC 52325 29 100.0 32 ............................. CGATGAGAGCCAAGGAGATCGCCAAGGCGGTA 52264 29 75.9 0 ...................C..AA.CCGC | ========== ====== ====== ====== ============================= ================================= ================== 26 29 98.4 32 GTTCTCTCCGCGCGAGCGGAGGTGGATCG # Left flank : CCCGATGACGAGGGCTTCGACATCGACGACGTCGAACTTGTGCACCTGTGGGATCCCCAAGCCGGAACCCTCGCTGGAGGCACAAACTACGCCGACCGCGTCGGCGCACCGGCTAAGGAAGACATCGCTGACTGGACCGACGCCGATGAGGAACCAAGCAGCTCATGGCCAACCTGACAGTCATCAACACCAGTGCTGTCCCAGCCTATGTCCGGGGCGCACTTAGCCGCTGGATGCTAGAACCAGCCCCCGGACTCTACGTAGGAACACTGTCTGCGAAGGTTCGAGAAGAACTTTGGGCCGTGGTGTCAGCGAGTGTCAGCGACGGCGCAGCGGTGCTGGTGTATCCCGCCGACACCGAGCAGCGATTCGCAATTCAGACAGCCGGGACATGGAGGCGAGAGGTCGTCGACTTTGAGGGTCTGGCATTGGTGGCGTTGAACCAGCTGGAAGAAGATAACGAAACGGCCACGTCCTAGCCGTAGTGCAGGTCGTGAAGG # Right flank : GAGGCCGCGCTTCAAAGATCAAGGCGACTACTCCTGGGAGGATCTTTCTGTCATCGTGGCAAGTCCCTGGTCGTCGAGTATGCGCGGGGATGGAACTCGGCGAGGTAAGGGTGCCAACGATATGGATCGAACCCAGGTACCGATCACGACGATCGGCCATCAAGCGCGGGTGCTTCGGGCAACGCGGCCCGTTGTGACCAGCGCTGTCATCGGCGCTGTGGTCGCAGCGTCGCTGCTGGTTGTACGCCTTGGTATGGCCCCTCAGCTTCCCGCGTATCTGTACTTCGTCGTGGTCGGCGTACCGTTGGCGGCGATCGACGCGACGACGGGGAAGCTGCCAGATTGTCTGACTCTGCCGTCTTATCCGATTCTCGTCATCATGTTCTGCGTTGCCGAGGGTGTATCCCCGGACCAAGGATCTACCGTGCGGGCGGCTGCAGCTGCGATTCTCCTTGTGGCCTTGTTCTTTGCATCAGCGTTTGTGCGCGGAGTGGGACTCG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCTCCGCGCGAGCGGAGGTGGATCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCTCTCCGCGCGAGCGGAGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.10,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 63671-68031 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAFYZ010000028.1 Catenulispora pinistramenti strain NL8 NODE_28, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 63671 29 100.0 32 ............................. CCGTACTCGGCCGCCTCAGCGAGGTATCTGGC 63732 29 100.0 32 ............................. GCGTGACGCCGGGCGAGGAAGCGCTGGCGGCC 63793 29 100.0 32 ............................. GCGGCAAACTGCGCCTGGCCTGGTTCGCCGAC 63854 29 100.0 32 ............................. CCCCGCGAGGAGGCGCCCCCGGCCGCGGTGGA 63915 29 100.0 32 ............................. AAGTCCTCCCCGTGCTGTCCCCGGGCGCCGCG 63976 29 100.0 32 ............................. AGGTGGGGCTGCGGTGGATGACGACGGGCAGC 64037 29 100.0 32 ............................. ACATCAGCCTGGCCCGCGAGGCCGAGATCACC 64098 29 100.0 32 ............................. GGTGTCGCGCCAGCGGTCGAGGCGGTCCGTGA 64159 29 100.0 32 ............................. TCCATGTCGCGGATCGTGTGGGCGTTCGGCAC 64220 29 100.0 32 ............................. TCCCGCAGGATGTCCACCAGGAACGCCGGGAT 64281 29 100.0 32 ............................. CGCGCGACGCGAAGGGTGAGCAGCGGTGAGCG 64342 29 100.0 32 ............................. GACACGGAGCATCCGGTGGAGCATCGCCTGGT 64403 29 100.0 32 ............................. GCAATAGCGATGACTTTTCCTCCCGGTCCTAT 64464 29 100.0 32 ............................. GGAGTTTATGCGCGCGGGGGAAAGTGGGTATC 64525 29 100.0 32 ............................. ACGGCGAGATGGCCCGCTTCGCCACCTGGAAC 64586 29 100.0 32 ............................. TCCAGCCAGAACGCCGCCGGTGACGCCAACGC 64647 29 100.0 32 ............................. TAGAAGACCTTCGTCAGCGACTTGGCGACAGA 64708 29 100.0 32 ............................. GCGGCGTAATTCGTCTTCGGGGATTGGCAGAC 64769 29 100.0 32 ............................. TCCCGAGCCCGCGATGTCCGCGCCGCGACTGA 64830 29 100.0 32 ............................. AGCTGAGCTGGGAGGCGGTCGACCTGTATCCG 64891 29 100.0 32 ............................. TGCAGGAGGCTGCCCAGGCCGCTGGTGATGTT 64952 29 100.0 32 ............................. CGTCCCGTGGCGATCGCCTCGGACGCGTACTG 65013 29 100.0 32 ............................. ACCGGCGCCAGCTCGGCGGGCGATGTTCTCCG 65074 29 100.0 32 ............................. CCCGCGCCAAGACCAACACCGACGCCGCGACC 65135 29 100.0 32 ............................. TGGAAGGCGTCATGAGCAGCGCCGCCAACACC 65196 29 100.0 32 ............................. ACCCGCTGGTCGCTGCCGTGCGCCGCGGACTT 65257 29 100.0 32 ............................. TGGCTAGTCGCAGTCGCGGTATCGGCGGAACA 65318 29 100.0 32 ............................. TCGGTCGAGCGCCCGGACCATCTTGGGCCTTG 65379 29 100.0 32 ............................. GCGGTGCGTGCCGAGCAGGCTGGCCATGACGA 65440 29 100.0 32 ............................. CTGAAGCGCGAGGAGCGGCTGTTCAACCACGA 65501 29 100.0 32 ............................. GTCGGGGACTCTTCGCCGTAGTCCCGGCGCAT 65562 29 100.0 32 ............................. CTGGCCCACCCGGACATTTTCGTGCAGCTGAC 65623 29 100.0 32 ............................. TCGAGCTCGTCGGGCCCCAGGTCGTCGTCAAG 65684 29 100.0 32 ............................. GCGACATGGAACGGCTCCGCTCATCGTTCGGC 65745 29 100.0 32 ............................. ATGCTCAGGAAGCGGCGGATACGGACCGGCTT 65806 29 100.0 32 ............................. GTCAGCGACGCTGGTGCCACCAGCGCGGCGAC 65867 29 100.0 32 ............................. TTCGCGTTCGAGGTGGCCCGCACCGCCAGCTT 65928 29 100.0 32 ............................. CGTGACTTCGTGGGGATGTTCAAGAGCGGTTC 65989 29 100.0 32 ............................. CAGCTTCTCGGTGCGGCTGCCTCCACAAACAA 66050 29 96.6 32 ............................A AGAAGGAGTCCCCCGGCGCCCTGCTCGCCGGG 66111 29 100.0 32 ............................. CAGACCGGCCACCCCTATTTCCGCACCACGGT 66172 29 100.0 32 ............................. CAGACCGGCCACCCCTATTTCCGCACCACGGT 66233 29 100.0 32 ............................. GGTTCGTCGCAGAGCGCGCATTCCTCGCCCTC 66294 29 100.0 32 ............................. TCGTGGACGTTCAGCGGGTCGGGCATGTCGAG 66355 29 100.0 32 ............................. GTGAGGCGGCGGACCGTATGACCCTGATGAGA 66416 29 100.0 32 ............................. TCCTCGGCCGAGTTCGAGGATCCGGCGATGCC 66477 29 100.0 32 ............................. CCGAGACGTCCGACGCGACATCGGACGCTACG 66538 29 100.0 32 ............................. GCGTTGAACGGCCCGAGGAACTGCGGGGTGGT 66599 29 100.0 32 ............................. ACCTGGCCGTCCTGCGTGTGCTGGAAGATCGC 66660 29 100.0 32 ............................. TTCGATAGGGCGGAGTTCATCGCTGAGCGGTT 66721 29 100.0 32 ............................. GCTCCGGTGCCGTCTCCCAGGACTGCGGAGAC 66782 29 100.0 32 ............................. CGCTGCATCTCTCCCTCTTGGTGGACCTGATG 66843 29 100.0 32 ............................. TACCGCGCCGCCGTCCGCACGTGGGGCCGGGA 66904 29 100.0 32 ............................. GCATCCGGGCTCGCGTGGAGCACGCTGAGTGT 66965 29 100.0 32 ............................. TCCACCAGGATGTACTCCTGATCGCTCTCGCT 67026 29 100.0 32 ............................. CCGCGCGCTCTGGGCAGGGTTCGCGCGCCACC 67087 29 93.1 34 ..................T.........A GAAAACTCGTCGCGTTCGGTGTCGTAGCCAAGTG 67150 29 100.0 32 ............................. CGCGCTGCCGTGTTTGGGCTGGTTGTGCAGGA 67211 29 100.0 32 ............................. AGGGCATCACCGTAGGCCTCGTGGACGCCATC 67272 29 100.0 32 ............................. CCAGCTCCTGACCGACCGCCGGCTGTCCGGTA 67333 29 100.0 31 ............................. TGCAGACCGTCGTCGGTGACCGCGTCCAGCC 67393 29 100.0 32 ............................. CCCTCGGCGCCCGCAACACCGTCCACGCCGTC 67454 29 100.0 32 ............................. TGGGTCGAGGCAAAGGGCTGGATTGCTTCCGA 67515 29 100.0 32 ............................. TTTGAGCGGCCGGGACGCCCGGCCGGAGCTGG 67576 29 100.0 32 ............................. CGGACGGCCAGCGACCCGCACCGTTACTCGAC 67637 29 100.0 32 ............................. GCCTCGCTGGTGGAAGCACCGCCGGAGTACCG 67698 29 100.0 32 ............................. CCGGGAGCGCTCAGCGCGAACTCCGCCTCCTC 67759 29 100.0 32 ............................. ATCAGTAGGAGGGAGGTCCCGCGATGGCCGGC 67820 29 93.1 32 ..............C..........C... CGAGCATGAAGGGGTTATGACCGTGGCATCCA 67881 29 100.0 32 ............................. CTGCTCCTGGCGCGCGGTCTCAGTTGTCTTCT 67942 29 100.0 32 ............................. GACATCCGGGCGCTGGACAGCACGGTGTCCTC 68003 29 96.6 0 ..............C.............. | ========== ====== ====== ====== ============================= ================================== ================== 72 29 99.7 32 GTTCTCTCCGCGCAGGCGGAGGTGGTTCG # Left flank : TTGGAAAGCTACTGAGATTTTGCCGATATCATGCAGCCCCGCCCAAAACATCACCAGAGAGCGACACACCTGCGGCTCGACCTTCAAACCAGCGGCAAGTCTCCCGACGAGATCAGGACTCATCAACGCGTCAAACAGCGCGCCAGCTATCGCCGCAGTATCCATGAGGTGACAGAGCACCGGATACGGCCGCTCAAGATGGTCCGTCGACTTGGCCCACAAGCGACAGTCAGCAACCATCACCCGAGATTGATCGCGATCTCCTGACTCCACGCTGGCGAGCCAACCACAGACCTCCGACAACAACTCCAGACCACGCGCAGGCGGACACGGTGCCCCGGCAACCTATGTGATCGCCCATCCGCCCGACAATGACGTCTCCGAACCGCGCTCCAGTAGGCTCCACACGTGCCTCTATCCAACTCGAAGCAGACGACGCAATGCCTCAAGGGCTGAGTCACGTTTCAGTAACGTAGAACTGCCGCCCCAGGTCGGGAAGG # Right flank : GGAGCCGCACAGCTGTCGAAGTTCCCCCCATTTGAACCACCCGATCAAGCCCATATTGCCCTGGCAGCGTGCGTCGTATCGACCTGCCTCCACCGCGACGCCTAGCAAGACCAGGGCCAGCACGCGGCCACCTCTTTAGATCACCCGTTCGAGCAGCTATGGGAAAAGCGCGAAGCGCCAGGACTCGAACCAGCCGGAGTCTCACTCCATGTCAAAAACCGCATCGCCTACGTTCAGCCGCATGTCAGGGGCGGTACATCAACCCCCTGTAAATCCGTCGCGAAAGCTTCGAAGGTTCGAATCCTTCACCCGCCACATCCAGGCAAACCAGCCCCTGACCAGGTGAACTCTGGTCAGGGGCTGGTTTGCGCACGCACTTGGCGTAGACCCGCAGGACGACCTCGACGCTTTGGTCGGCCCACTCGGCGATCTGGGTCGGTGGGACACCGGCGTTCAGCCAGGTCGATACGGCAGCATGCCGGAGGTCGTACGGGCGCTTC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCTCCGCGCAGGCGGAGGTGGTTCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCTCTCCGCGCAGGCGGAGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.80,-9.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 11140-10685 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAFYZ010000051.1 Catenulispora pinistramenti strain NL8 NODE_51, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 11139 29 100.0 32 ............................. GTGTCCAGGTTCCCGCCGGTCTCGTGATCCTG 11078 29 100.0 32 ............................. GGGGGCGACCCCGGAGGTTCCCACCGTATTAC 11017 29 100.0 32 ............................. CACCCGGCCCGATTCGGGGCCGGCACCGTGGG 10956 29 100.0 32 ............................. GATCAGGCGCGGTCGCTGTCGTCATTGGACAC 10895 29 100.0 32 ............................. AGAACCTCCGCAGCGATTTCGGCGAACTCGTC 10834 29 100.0 32 ............................. CTCCCGCGCCACGGTCAGGCCTCGGTGGTGTG 10773 29 100.0 32 ............................. ATCTCATCCGGGAGCAGGTTCTCGGCGTGCAG 10712 28 82.8 0 .................A..G...-..GG | ========== ====== ====== ====== ============================= ================================ ================== 8 29 97.8 32 CGATCCACCTCCGCTCGCGCAGAGAGTCC # Left flank : TGTCACCGACCACCCGACCGGCGCCTGGGCCACTCAGGTCGCCCGGGAACTCGCCGCCGATCTGGAACAGGCCGGCCACCGCTTCACCCGGCTGATCCGGGACCGGGATGCCAAGTTCACCGAGTCCTTCGACGCCGTGTTCACCGCCATCGGCATCGAGATCTTGCCGACCGCGCCGCAGGCGCCGAGGATGAACGCCTACGTCGAGCGGCTGATCGGCTCGATCCGCCGCGAATGCTGCGACCGGCTCCTCATCGTCGGGCAGCACCACCTGCGTCGGGTCTTGGACGAATACCTTGAGCACTACAACGCCGGCCGGTCCCACCAAGGCCACGGCATGGCGCTACCCGCCCCGAATGATCCATCCAACGTGATCCCGATGCCAGTTTCCATCAACGAGATCCGCCGCCGAAAACGACTCGGAGGCTTGATCAACGAGTATCGAATAGCAGCCTAAACCCCAGGTCAGACCCTATGGCTCGGTTTTGGTGCAGGACAGG # Right flank : ATCGTTGAGCTTCGACGTGTTTGTATGTGTCCCTTTGGACTCTCTGCGCGAGCGGAGGTGGATCGATGTCGGTGCTCATGATCTCTCCTATCGGGATGGACTCTCTGCGCGAGCGGAGGTGGATCGGTCACCGGACCCATCCGCACCGCGCCGCTCGTGGACTCTCTGCGCGAGCGGAGGTGGTTCGCCCCATCCTCGCCGCGGCGGAACTTCGGTCGAGTGCTCTCCGTGCAAGTGGAGGTTCATCAGGAGGCGGTGCGCCGGCTGTAACTACGTGCTGATAGCTGCCGACGTTCTCTCCGGTAGCCAGAGGTGCTGAGACCGGCCACCTGCACCTCGTGGGGGCACGGCGCATTCTCTGCGCGCAGGCGGAGGTGGTCCAAAGGAAGCCCTTCACCGAGGTGGAGTGCCTTCACTTAGCATTCGAATGCATGCGCCATAGGCGTTGGGCGCAGCAGGTCGGACAAGATCCGCGTATTGGGTCTACGACATCTCAGATC # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGATCCACCTCCGCTCGCGCAGAGAGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.50,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 86605-91156 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAFYZ010000002.1 Catenulispora pinistramenti strain NL8 NODE_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================= ================== 86605 28 100.0 33 ............................ AACCACGCGTGGGTTCAGACCGTCTCCGAGGCC 86666 28 100.0 33 ............................ CCGGTGCCGCATCAGAACACGGTGATGCGGGCC 86727 28 100.0 33 ............................ CGTGTGTCGCGGGCTGGTGTACCGCAGGCCGGT 86788 28 100.0 33 ............................ GTGGCAGACGCGTGCGGTGCGTGCGTCGGCGAA 86849 28 100.0 33 ............................ CTTGGCCATCGGTGGCTGGAACGACGCGACCGC 86910 28 100.0 33 ............................ CCACACCCTGGCCGTCAATGACGCCGCCACCGC 86971 28 100.0 33 ............................ CGTAGCTGATCGAGTAGTTTGGGGGCATGCTCA 87032 28 100.0 33 ............................ CCTGGACACCGCCCGCCAGCTCCAGCTTCAGGT 87093 28 100.0 33 ............................ CAGAAGGAGGTCGGGATGACCACTACACAACCT 87154 28 100.0 33 ............................ GAACATCGACGTGATCGCGGCCTCGGCTTTCTT 87215 28 100.0 33 ............................ CTCGTCGGCGTGGGCGAGAAGCCGGTGCGCCTC 87276 28 100.0 33 ............................ CGCCAGCCGCGACGGCGGCGGTAACGGTTGCGG 87337 28 100.0 33 ............................ CGCAGGCCGCAGCCTGGATGATGCAGGCAAAAA 87398 28 100.0 33 ............................ CCCATTGGCCCCTACGACGGCTACTCGCGGAAC 87459 28 100.0 33 ............................ CTTGTGCATTCGGGAGGGCAGGCCCTTCCCGCG 87520 28 100.0 33 ............................ CTCATGTACCACCACCCGGGGTGAGCAGGTGCG 87581 28 100.0 33 ............................ TTCCGGGATAGACGCCGACCACACCGACCCGTT 87642 28 100.0 33 ............................ CTGATCGTCGCGATGTGCCAGAAGGCGGACCGC 87703 28 100.0 33 ............................ TCCAGCGCGGGCAAAAGCACTGCCCTTGTCGCC 87764 28 100.0 33 ............................ GCGTGCCTAAGCCGAACAGGATCACGATCAGGA 87825 28 100.0 33 ............................ CATGCACGACCTGAAGCGAAGGCTTGTGAAGCC 87886 28 96.4 33 ...............A............ CCTCGTTCTCGGTTCCAGCTCCGCGACCACGTT 87947 28 96.4 33 ...............A............ TGATCCGGCATCCGGCATGAGCGTGACCGAGGT 88008 28 100.0 33 ............................ CCCGGATGCCGAGGCTCGCTCCGCGCACGCCCT 88069 28 100.0 33 ............................ CAGGACCGACGTACGCGGGTGCTCGATCGAGGT 88130 28 100.0 33 ............................ CTACGTGGCGACGGCATGGCTGTACTCAGGTCC 88191 28 96.4 33 ...............A............ GGTGCTGTGGATGGGGATCATGAAGTTCGTCAA 88252 28 96.4 33 .............C.............. CGAGGTACAGAAGTTCACCTCCTCGATGATGGT 88313 28 96.4 41 .................A.......... GTCGACACGTCGACATGGTTCTTCCTCATCTTGCCGCTGTG 88382 28 100.0 33 ............................ CACGGAGGTGCCCGCGATGATGCTGGGAATGCC 88443 27 96.4 33 .....-...................... CTTCCCGCCGGTGTCGTTCCACAGTTCGGTCAG 88503 28 96.4 33 .....................G...... GTCGTAGGAGGCGACGAGTGCGAACGGGCCGGA 88564 28 92.9 33 .....................G...C.. CGTTATCGATGATGGGTTCGCCTCGGGTCGGTC 88625 28 92.9 33 .................A...G...... GCTCGCGTTGGACGCGGCCCGGCCCCGGACCTC 88686 28 96.4 33 .....................G...... CGTCTCGGCGTCGATGTTATCCGGCAGCAACAG 88747 28 100.0 33 ............................ GATGACTGGTCGGCTCGATGAGGCCCTGGCTCA 88808 28 96.4 33 ........................C... AGTGCCTTGCATAGCGAACAACACCGGTCGCGT 88869 28 96.4 33 ............A............... GCTGTTCTGTCTGACACGGTCCCTCGTCAGCCG 88930 28 89.3 33 T.A.T....................... CTCGATCAGGTTGCCGAGGGCACCCTGACACTT 88991 27 89.3 33 ......T............A.-...... CTGGATGATGTCGAGCCCGAGAGACTGCGCCTC 89051 28 96.4 33 ........................C... GTTCCCCGCGTCCTTGTCACATTCGCCCATGTA 89112 28 92.9 33 ....................AG...... CCCGTTCCCGGCGAAGAACTGGTTCGGGTCGCT 89173 28 100.0 33 ............................ GCTGGCCGAGTCGCAGGGCGCTCAGATCGCAGG 89234 28 92.9 32 .C...............C.......... ATCCGGGTCGTAGTCGGGGCATCAGCCGCCGT 89294 28 92.9 38 .A...............T.......... GTACTGGATGGGCCCACACGCCGGTGTCCGCACCGCCT T [89297] 89361 28 82.1 33 .C.T..........T.T........G.. TGCCGGCGCCACCAATCCGATGACTTTCGTCGC 89422 28 89.3 33 ...........GA...........C... CATCACCGCCAGTCGGGTCTGGCGCCGGTTACA 89483 28 89.3 34 ..T......A........A......... GTTCACGCTGGACGAGGCCCAAACTAAGGAAAAA 89545 28 92.9 33 ...........CA............... GCTGTTCTGTCTGACACGGTCCGTCGTCAGCCG 89606 28 89.3 33 T.A.T....................... CTCGATCAGGTTGCCGAGGGCACCCTGACACTT 89667 28 89.3 33 .C..................CG...... GAGCTGGTACTGGTTGGGGAAGAACAGCACCTC GG [89671] 89730 28 85.7 33 ............A.T......GG..... CAGCATGAAGGTGATCGCCGCTTCGGCCTTCTT C [89751] 89792 28 92.9 33 ............C.....C......... ATGCACCATCAGCTCGCTGTAGACCGGATGCCC 89853 27 85.7 31 ..............T......-.G...A CTGCCGGGGGGATGCCTGGCGCGCTGTTACC 89911 28 85.7 31 ...A....T...A...A........... GATCCAGGACACGTTCAACCAGAGCATCGAC 89970 28 92.9 33 ..........T............T.... CGTCGGCACGCTGATGGCGATTGCCGTTCAGAC G,A [89972,89974] 90033 28 100.0 33 ............................ CCCGTGGAAGAACTGCGCGAGCTCTTCGCCCGT C [90038] 90095 28 85.7 27 ....A.......AA....A......... CGGCTCATGGATGAGCACTTATCCCAC T [90119] 90151 27 89.3 33 ...-.A.....G................ TGTCCTGGTGGAGTGGCTGGCCCGGAACGAGCT 90211 28 96.4 32 ...A........................ TCCACGACATCCAAATCCTGTGCCGGTCCCGC T [90235] 90272 27 89.3 33 .............C...A.....-.... TGCAGCGGTGACGAGGCGGCCTTGCTTCCGGCA 90332 28 85.7 33 ....A.......CA...A.......... CTCGTCCCCGGTCGCGAGCAACACGTCGGGGTT 90393 28 85.7 33 ..G.........T.......AG...... TCGCCAGCGGCGGTCGACGTGGCAGGTGTGCTT 90454 28 89.3 37 .................A...G....T. TTCCCTCCGCGAGACCCGCGCTGCGCTCGTCGACTAC 90519 28 85.7 33 ...........CA......A.G...... GCGGTTCCGCACTGCGCGGTACGCCCGGAACTG 90580 28 92.9 33 ..............G......G...... CATGCCGTCGTTGGTGTCGGTCTACGGGTATCC 90641 28 89.3 38 ......T..............GG..... CGGCTCATCACTTGGATTGGAGAGGGACTCCTTCCGTG GG [90658] 90709 28 85.7 33 .C..........A....A...G...... CTCCTGCAGCTCCGCAACGGTGAACGGCATGGT 90770 27 89.3 31 ..A..............-....G..... TCGCGAGACGGGCAGCGCCTTGACCGGTCAT 90828 28 92.9 33 ........G...C............... GTACACCATCAGCTCGCTGTAGACCGGATGCCC 90889 28 92.9 32 .....T.....................G TGTCGTTCAACTCGCCGTCCGGCGCGGACCTG 90949 27 85.7 33 .....T......AA...-.......... CATTCCCAGCGGCCACAGCCACGCATAGGCTGC 91009 27 82.1 33 ...T....G....A......T...-... TTCGATGTTGCCGGTGGTGCCTTCGGTCCGGGA 91069 28 85.7 33 ......T.........TA.A........ GAAGCCGCCGGCGTAGAGCATTGCGATTCGCGC 91130 27 89.3 0 ...A.-............A......... | ========== ====== ====== ====== ============================ ========================================= ================== 75 28 94.3 33 GTCGGCCCCGCAGGCGCGGGGATCTTCC # Left flank : ATCAGCAACCTGGTCCGCGACTCCGAACCCGAGATCGAAGTGCTCCTTGTCCGCCGGACACCCCACGGACTCACCACGCTGAGCGGCACACGCCTCGGGATCAACGGCGAAGCCGCCTCCGACGCCATCGACGAAGTCCTCGCCGACACGGTCCGACTACCCAGGAGAGTCGCCGCTGCCACGAAGCATCTACGACCGCTGGACGGCTGCAGCCACCCCTGGCTGCAGTACCTGAGTGTTCTAGAGCTCGACGAGCACAACGCAGTACATTTGGTCGACGGACGCAAAACCTTCCACGTCGAGTACGACCAAAAGGTCGGACTGCTGGTCAGGGCCACAAGTCAACGACGGTGACAAATCACACGTGCCCGTTCGCTCCGAGCCGTCTACCGCACGCCAGCAGGATCACACGAGGCAACAGAAGAGTCTGGCTCACCGTGGCTAAATTCGCAGTGAAGAAGAACGAACGGCCTCCCTAGAAAAGCCACAGCTCACGAAGT # Right flank : CCTACCAGCAGGCCATGGGCGAACTCCAGCCGAGGTACGCGCCCACGCGTTGCTGCCCGATGCGCGACGTATGCTCCGAAGGCGCGGGTCTTCCCTACGAGTAGGGCACCAATGGCGCCCCACTTATCGCTTCCAAAGGCCCAACAGCCTGACACCCATCGTCTTATAGTTCGAGGCCGGCTTGCGCCACGCCACCGAGCAGCCCACGTTTGGCCCACTCGTAACACGCATGGCCTTGCCCTGAATAATCGCGAATGTCAGGTTTTGGGCATGACAAAACGCGACATCCCCTCATGGCCGACGCCGAGACGCTCCGGATCCGCCACGAGCACCTACTTCGACACAGTCGTCAGCGCGCCCACGTCCCAGCCAGTCGAGGAGCGGGAGCTGACGTGGTACCAGCACGCGATTGCGTTCAACGACATGAAGTGGCCATTCCTGCAGTGCGGTTCACGTCGCAGCTATGCAGAGTGTCTGGCCACCGTCACTGCGGGCATCGT # Questionable array : NO Score: 5.46 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.49, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCAGGCGCGGGGATCTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-92] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA //