Array 1 93069-91638 **** Predicted by CRISPRDetect 2.4 *** >NZ_FCOI02000022.1 Caballeronia temeraria isolate LMG 29319, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 93068 28 100.0 33 ............................ TCGAACACGCGCGGCGGATACATCGACGAGAAC 93007 28 100.0 33 ............................ CGGCGCGCAGACGATCACCCACATCGACGAACC 92946 28 100.0 33 ............................ TGCAGAGATCGCAGAGTGTCTGCGCTGGCTGGC 92885 28 100.0 33 ............................ CGAAAGCGCCTGCGAGGCTACCGACAAAAATAG 92824 28 100.0 33 ............................ TTTCGGCTCCTTGGCGATCGCGGCGTCGATCGC 92763 28 100.0 33 ............................ TTCGACGGCGTTCTTGTAGTTGTCGAGCGATTC 92702 28 100.0 33 ............................ CCAGAATAGGACGAACGATCATGAACCGCTCAA 92641 28 100.0 33 ............................ CGAGCCGCCCAGTTCGTTTCCGTTTCGGCTCAG 92580 28 100.0 33 ............................ CGTCGAAGAGTTCCAGCACTGGGGCCCGCTGAC 92519 28 100.0 33 ............................ CTTGACGCTGCAATGAAAGACCCGAACGCGGCG 92458 28 100.0 33 ............................ CAAGAGACTCGCATCACCAAGCCGCCTTCGGGC 92397 28 96.4 33 ........................A... CGCGCAAGACTACGCGGACAGCGTGCCCATGGT 92336 28 100.0 33 ............................ CAGGCGCTTGCCGTCATCGGCGATCTACCGATC 92275 28 100.0 33 ............................ TTCGCCTACTACCATCGGACGATGGAAACCAAA 92214 28 96.4 33 .................A.......... CGGGCGGGCGTTTTTCACGATCCGCGGCGAGCA 92153 28 100.0 33 ............................ CGGCGCTGGCTGCCGGTGCGCGTCGGGCAGTGC 92092 28 100.0 33 ............................ CGCGCAGCTTCTGGGAAAAAATTTCCGTGGGTT 92031 28 96.4 33 .....................G...... CGGAATGTCGTAGCTCGTATTGAAGCCGATGTT 91970 28 100.0 33 ............................ GAAAAAGGGCTGATCGCGCGACGCGCGACGCCG 91909 28 100.0 33 ............................ CGACATCGCGCACATTCGGCGGGATCATTCGAA 91848 28 100.0 33 ............................ CGACCCACTCCGCTCATACACACGCCGCGGCCA 91787 28 100.0 33 ............................ TCTGAACAGCCGCGGCGAGACCGAGTTCAACCG 91726 28 100.0 33 ............................ CTGGATGATGCGTCCGGCGCGCACGGCGACGGG 91665 28 85.7 0 ...........A.A........C..C.. | ========== ====== ====== ====== ============================ ================================= ================== 24 28 99.0 33 GGTTCCTCCGCGTGCGCGGAGATAGACC # Left flank : GTGCAGATAGGCGAGCACTGCTAGCCGCTCGATGTCCTGATCAGTCAAGGTTCGGCCGGCAGTGTAGGTCAGAGCGTCGTGAATGCGTCCGCACGCGGCAATTTGCCAGAAAGCACGCGGCCACATCCAGCATGTGATCGCCAAGCGGATGACAAGGCGAGTGCTCGTCTCCGGCGCGCGGCCGTTTGCCCCACGCGGTGAATGTGTCGGTTTCGCTTGCTTCGGTTTTCATGCGCTTTGGGATCGCGTGACGCTGCCTCGAAGCAGAGATATTGCGTCGCGATCAATAGGTTTGGATTCCTATTTTTGTTTGGCGGACCGGAGAGCTTCTATACGAATTTGCCGAATTTCAGGGGCGAATGCCTGACTCGTTGCGGTGCATCAGTGCGGAGCCGCATTGTTCGACAGCGGCCCGGCAGCTCGCGATACTCTTTCGCGTGCCAAATTCAAAACATCGATTTGGTCGTTTGTTCTTTTAAATCATGAATATAGTGGGTAGA # Right flank : CAAGGGCATACACGCGGGCAAGATCAGCGGCCCACCACCCTCACCCCACCCCCTCAAACCTCCCCCGCGCCGCCTTCACCACCCGCATCACCGCCTCCTCACTCAACCGCGCGGCGATCGCCTTCACATACTCATGATGCCGCGCTTCCAGCGGCGCATCGAGATACTGCGCGTGCAGATACCGGATCAACGCAATCCGCCGATGCTTCAACGCAATACTCCGATCCAGCAGCGCGAGCGCCGCGTCCGCATCGTGCTTCTTGCATGCACGCTCGGAAAGCTGCGCGGCAGCATCGCGCGACGCGTTCATCGCACGATCGCGTGTTGCGCCTCAGCCCGCAAACGCCACGCATCGAAATCCGCGCGACGCCAGTCGAGTTCGAGCCCAAGGCGCTTCGTGCCCTCGCGAATCTTCGGCTTGTGCAACGTCAACGTGAGCGCATCGAGCGCGGGCCATTCCTCGAACGATAGCGCCGCGATCTCCACCGCGAGCGTCTCGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCCTCCGCGTGCGCGGAGATAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.00,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 2 102168-102988 **** Predicted by CRISPRDetect 2.4 *** >NZ_FCOI02000022.1 Caballeronia temeraria isolate LMG 29319, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 102168 28 100.0 33 ............................ GCCGCGGCCGCAGATATGACGATCTCTCAAAAG 102229 28 100.0 33 ............................ CGCGTCGCCGATGCGGGGCTGCTGATCGATCTC 102290 28 96.4 33 ..........A................. CACGGCGCTCATGATGGCGCAGGCGATCGATCA 102351 28 100.0 33 ............................ CCATGTCGAAAAAGCCGTGCGCGCAATCGGCGA 102412 28 100.0 33 ............................ CCAGTTCTCGAAGTACATGGGCACGGACGAAGG 102473 28 100.0 33 ............................ CTCGTCCGACTGTGCTGCTACGGCCCGCTGATA 102534 28 100.0 33 ............................ TCTGAGCCGCTTCAGGGGCACGCCGTTCGTGCC 102595 28 100.0 33 ............................ CTTTCGTCTGGCCCGTGAGCGCACGGTAATAGA 102656 28 100.0 33 ............................ CCAGTCGCGCACGGTGCGCTCCGAGCGGCGCAA 102717 28 100.0 33 ............................ CTCGCGAATGAACGCGGCGGGGTCGATCACTCG 102778 28 100.0 33 ............................ TTGCGCAACGCCGCACGATCGCCCAAGCAAACG 102839 28 100.0 33 ............................ CGCGGGCATGCCGCCGCCGTACTGGGGCGACAT 102900 28 78.6 33 .C.........CCC.A.........C.. CTCGCCGATTCCCAGCTGCTGCACGATCAGATC 102961 28 67.9 0 .T.C.......CCC.......C.TCC.. | ========== ====== ====== ====== ============================ ================================= ================== 14 28 95.9 33 GGTTCCTCCGCGTGCGCGGAGATAGACC # Left flank : AGCGATCAGAGCATCGACCGGCTGGTGCGGCGCGAGGCGGCGCGCGTGTTTCGCAAGAAGGCGGTCATTCCCGCGATGATCGATCGCGTGAAGCAGGTGCTGCGTCTCGATGAAAAGCTGGAGGACAACGATGGCGCTGGTCGTGGTGGTGACGTCTGACGTCGCGGACCGGTTTCGGGGATTTCTGGCGTCGGTGATGCTGGAGGTGTCGGCGGGCGTGTATGTGGCGCCGCGTATGGGCAAGGGCGTGCGCGAGCGAACGTGGTCGGTGCTTGCCGATTGGCATGGACATGAGCCGCGCGGCAGCGTCGTGATGGTGTGGCGCGATCTCGATGCGGTGGGTGGCATCGGCATCGCGCATCTTGGTGCGCCGCCGAGAGCGCTCGTCGAGGTGGATGGGATGTATGTCGTGCGGCGGATGTTGGCGGGGTAGGGGTGTTTCGTTCTTTGAAGATCTGTTTTTTTGGATGGGATCGGGATGGGGGTTTTTCCTTTGGGAT # Right flank : CCTTAAACCCGCGCGAAGCCCCTCTGCACCACCCCAACATCCCGCGCCCGTTTCCCCTTCGCCACAAAATAAGGCGTCATCACCCGCTCCAACGCGTCCCGCCCCCGAATCCGATCCGCGATCTTCTCGGCCAGCATGATCGTCGGCGCATTGAGATTCCCCGTGGTGATCTGCGGCATGATCGACGCATCCACGACGCGCAATCCTTCCATCCCGTGCACGCGTCCTTCACCATCGACGACGGCCATATCGTCAAATCCCATCTTGCACGAACACGAAGGATGAAAAGCCGTCTCCGCCTTCGCTTTCACGAATGCATCGAGTTCGGCATCGCTTTGCAGATCATCGGATGGATGAAGCTCGCGCCCGCGATACCGTTCCAGTGCAGGCTGCCGCATGATCTCCCGCGTGATCCGGATCGCATCGCGGAATTCGCGCCAGTCGAGCGGATCGGCCATGTAATTGAAAAGAATGCCGGGATGCGCATTCGGATCGCGCGA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCCTCCGCGTGCGCGGAGATAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.60,-10.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA //