Array 1 544330-545577 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXMD01000001.1 Salmonella enterica strain BCW_1776 NODE_1_length_639142_cov_0.335076, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 544330 29 100.0 32 ............................. TAAACACATTGACTTTATCGCGATAAGCTATA 544391 29 100.0 32 ............................. ACTGATATAGATTCTATCCTGTCGGCGTCCCA 544452 29 100.0 32 ............................. CAACAGCGTCCCGTATTCTGTATCGTTGACGG 544513 29 100.0 32 ............................. CGCATTACTACCGGGATTAGTACCTATCAAAA 544574 29 100.0 32 ............................. GCCGAAGCCATCAAATCAAAAACAAAATTATC 544635 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 544696 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 544757 29 100.0 32 ............................. CGATAATTTATAAATTTTCGTCCACTCATCAA 544818 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 544879 29 96.6 32 ........T.................... CCGCAGAACGCCGCATCGCCGAACTGGACAAA 544940 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCGGACCAATCGACTA 545001 29 96.6 32 ...................A......... CGCCGCCAGCTGGAAAAATGCCGCCTGTTAAT 545062 29 100.0 32 ............................. CTCCAGCCGACGCATTCGCTTGATCGCTTTAT 545123 29 100.0 32 ............................. GGGCTGGACCTCGATTTATTTAATACGTTTAT 545184 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 545245 29 100.0 32 ............................. TCCTTTTATTCTAATGGGTTAGATAGGGTAGA 545306 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 545367 29 100.0 32 ............................. GCGCAGAATTTACAGGTGTCACTGTTGTCCGG 545428 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 545489 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 545550 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATTAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATTAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 561837-563619 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXMD01000001.1 Salmonella enterica strain BCW_1776 NODE_1_length_639142_cov_0.335076, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================= ================== 561837 29 100.0 33 ............................. TCCCCGAGCTTAGTTAGGTTTCGCTGAACGTGC 561899 29 100.0 33 ............................. GTGCGCGTGGAGCGCCTTAATTCAATTACTGAA 561961 29 100.0 32 ............................. ACCGGGTTGCCGTAGGTGCTGGCCCCCTTGAT 562022 29 100.0 32 ............................. GCCAGGGGTTCAGGATTTCGGATATTGCTGAC 562083 29 100.0 32 ............................. CGACGCCTCTTTTTTCTGTACCTTTTGCCGGT 562144 29 100.0 32 ............................. CACCTGGCGCCAGAAATATTCATGGTAATCGG 562205 29 96.6 32 ...........A................. TCACGGTGGAATATTGCAGCAAAATCAAAAGA 562266 29 100.0 32 ............................. GGTACTTTCGATACCAATAAGGACCGGATTAC 562327 29 100.0 32 ............................. TATAATTGGCGTCCATATATCTGGATATTTAC 562388 29 100.0 32 ............................. GCGCGGGAACGTGGGATGATGCCAGGACCATC 562449 29 100.0 32 ............................. TGGTCGAGGAGGGGCGGGCGATCACTGAAAAA 562510 29 100.0 32 ............................. TGGCCACAGTCTGGTTGTGTTGTTGGACGACA 562571 29 100.0 33 ............................. ATTTAAACCACATTGAAACGGCTATTTACTGGC 562633 29 100.0 73 ............................. CATTAAAAAAAACATTTGCTATAGGTGGCGGGGATAAACCGTGGTTGTTAATGCTGGCGATATTTTTAGCACA 562735 29 100.0 32 ............................. CAAAAAATTACCCATTGCGAAATCATATTCCC 562796 29 100.0 33 ............................. TTGAGCACGACGAAATTTGGGTTTGATGCAGCC 562858 29 100.0 32 ............................. GTTATTCAGTTTATTAAATTTTTCCGCCAAGT 562919 29 100.0 32 ............................. CAACTGTATTTTGCGTTATTACGCTGAACCAG 562980 29 100.0 32 ............................. CCGAGGTCGGAGCGGATTGACTTAAACGGCAA 563041 29 100.0 32 ............................. TGCAACAGCAACAGGAGAGAATGCGGCAGCGT 563102 29 100.0 32 ............................. CGTCAGTTGCTGGAACTGGGGCACGATCTGGT 563163 29 100.0 32 ............................. GAGCGGCTAAACGATGAATTAACCAGGGAGCG 563224 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 563285 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 563346 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCCTCCTGC 563407 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 563468 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 563529 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 563590 29 96.6 0 ............T................ | A [563617] ========== ====== ====== ====== ============================= ========================================================================= ================== 29 29 99.8 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //