Array 1 115668-109636 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDJG01000008.1 Stenotrophomonas nitritireducens strain DSM 12575 contig_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 115667 28 100.0 32 ............................ TGTCGAGATGAGCGCCATCTCTAGAGCGCGCA 115607 28 100.0 33 ............................ CGAGCGGGGGCTGATGGACAAGCTGGGGGCATG 115546 28 100.0 32 ............................ AACTACCAGATGCAGTCCTATGCGACTGACGA 115486 28 100.0 32 ............................ AGACGAGCCCGCCCGGATGTCCACCTGCACCA 115426 28 100.0 33 ............................ CTGTTGGAGTTCGGTGGCCTGAACACCATCCGC 115365 28 100.0 32 ............................ TGGCCGTAGCGGCATTTCATCGTCCAGCCAGA 115305 28 100.0 32 ............................ GACGCCGCGGTGGCGCACATCATCCGGTGGGA 115245 28 100.0 32 ............................ TCGTGAAAGTGCGCGATTACTACGTGCAGCAG 115185 28 100.0 32 ............................ AACGTGCTGGCCAAGCAGCTGCGCAGGGCCGG 115125 28 100.0 32 ............................ CTGCTGGGCACGGCCCCCACGTCGGACGACGA 115065 28 100.0 32 ............................ TGCTGACGGATTGCCTCAAGCAGCTGCACGTC 115005 28 100.0 32 ............................ AATCAAGTACCTCCGCTCGCGGCTGCCGACCA 114945 28 100.0 32 ............................ GGAATGCGTCAACGCAGGTGCTGCCGCTTTTT 114885 28 100.0 32 ............................ GCTGGGGAAGGTGAGGTTGTGGTACGGGCACT 114825 28 100.0 32 ............................ ATCAACGGCGTTAAGCGCGATTGCCGCGAACT 114765 28 100.0 32 ............................ ACCAGCACCGGGCCAAGTTCGCGGCCATTCCC 114705 28 100.0 32 ............................ GACCCGGGCGTGGCGGTGTACTGGGTGGACCA 114645 28 100.0 32 ............................ TGGCGCCAAGCTGGGGCCTCCGAAGTGGATGC 114585 28 100.0 32 ............................ ACACGCTCCAACGCGGCAAGCCGTCCGTCGCG 114525 28 100.0 32 ............................ ATTGAGCAACCAGCGAACTGTGTACGTCGTGC 114465 28 100.0 32 ............................ TGCTTGAACTGATTCAGCGCAGCGCGGAGACG 114405 28 100.0 32 ............................ TACGTCGACCAGGACGGCAACCACTTCATCGG 114345 28 100.0 32 ............................ AAGACCGCCGAGAACGAGAAGCGCATCGCCGG 114285 28 100.0 32 ............................ ACCATTTCGCGCAGCTTCTGCAACTGCTGCAC 114225 28 100.0 32 ............................ TGGCGATGCCGTCCGTGTGCTTGTGCATGGCC 114165 28 100.0 32 ............................ AAGTGGGATCGATAGACCAGTCGATAGGTAGC 114105 28 100.0 32 ............................ TTGTCAACACGGCGGAAGGCATCGCCGACTCC 114045 28 100.0 32 ............................ TGGGCGCGGAGCCCTCAGTCGAAGGCCACTTC 113985 28 100.0 32 ............................ TTCTGCGCATCGATAGTGTTGCGGATGATTGT 113925 28 100.0 32 ............................ TGCTGGTCGACGCCTGGGCACGCACCGAGAGC 113865 28 100.0 32 ............................ ATCGGCTTGCCCGTTGACGACTTGCAGGGACG 113805 28 100.0 32 ............................ CATCGGCAGCTCGGCGTAGGTGCCCATCATCC 113745 28 100.0 32 ............................ TCGTAGCGCATCCGGGTGGCGTTCGTGACCTT 113685 28 100.0 32 ............................ TCACCGAAGTCGGGGCGAATGGTCAGCACGGG 113625 28 100.0 32 ............................ TGTCGCGGCCGGTGTTGTTGTGCTTCTTCGCG 113565 28 100.0 32 ............................ ACGCTGGCCGGACTCACCGGCATACCGCTGGT 113505 28 100.0 32 ............................ ATGATGCCAGCGGCACCTACAACGGCCTGCTT 113445 28 100.0 33 ............................ CTCGAGGATCGGCTGCTCGTACTCCGGAACCGT 113384 28 100.0 32 ............................ TGCGGTGGGACGAGCGCCTGAAGGCTCTGCTC 113324 28 100.0 32 ............................ GTGCCGGGCACGCCGGCGATGCGGTTGAAGTC 113264 28 100.0 33 ............................ CTGGCCGGGCGAAGCGTGCGGAAATGTCGTGGA 113203 28 100.0 32 ............................ TGGGCGTGCATGGGTGGGAGGGCACAACCGGC 113143 28 100.0 32 ............................ TACAGAGCTACCAGGCATTCATCGCGGACCTG 113083 28 100.0 32 ............................ CGTATCGGCTATGCCCGTGACAGCCTGGATGA 113023 28 100.0 32 ............................ ATTGACATCGTGGCCGGCGCGGTCGTGCTCGG 112963 28 100.0 32 ............................ ACGCAGGGCATCCCGTGCACGTGCCAGCGCTT 112903 28 100.0 32 ............................ CTTCGGAAAGCACACCGAGGCCTGGCTGCAGC 112843 28 100.0 32 ............................ TCGATCAGTTCGGGCTCGGCCGCACCCCGCGC 112783 28 100.0 32 ............................ TTGACCGCGCCGGCGCCGGGCGTCAGCTTGGC 112723 28 100.0 32 ............................ GACATGGTTTGCCTGATGGGCGACCGGCAGGC 112663 28 100.0 32 ............................ ATCGACCACCACCACGCCACCCTTGACCGGCA 112603 28 100.0 32 ............................ TGCCTGGCGCCGAGCTGCGAAAGGACCTGACT 112543 28 100.0 32 ............................ AAGAGCCGTGCACCGGGAAGCCATCTAGCACT 112483 28 100.0 32 ............................ GAAATGCAGGCGAAGGCCGGTGACGTGGCCCG 112423 28 100.0 32 ............................ AATGCAATCGCAGCGCTGAGGCGCGCTCTCGT 112363 28 100.0 32 ............................ ATCACGGCCCGGCGAAGCATGCCAACGAGTAC 112303 28 100.0 32 ............................ TCGAACAGCTTGGAGTTGCGCGCCTTGATGCC 112243 28 100.0 32 ............................ ACCCCGAACTGGTCGAGTTCTTCGCCGACCCG 112183 28 100.0 32 ............................ AGGCTGTTGAGCGGGGCATCGTAGCCGTGGCC 112123 28 100.0 32 ............................ ATAGGAATAATTGCTGCATGAACCCTGCAACC 112063 28 100.0 32 ............................ CTCCCCGCCCTCGGTGGCCGGTGCACCAGCAC 112003 28 100.0 32 ............................ GTACAGGGCACGAACATCGTGGCCCTGAAGAA 111943 28 100.0 32 ............................ TCGACATCAGCTACATGGGCCTGCTGGACCTG 111883 28 100.0 32 ............................ GTTCACGCCAATTCGGCACTTGCGGGCCTCAT 111823 28 100.0 32 ............................ GCCCCCAACTTTGTCACGCTCCGCTCGGTTGA 111763 28 100.0 32 ............................ TCCCTGACCCCGTTGTATGCGCGACTATTGCC 111703 28 96.4 32 ...............A............ ATCCGCCGCGACGGCACCTATACCGCCCGCCT 111643 28 100.0 32 ............................ AATGTGGCCTCGATGACGTTGGCGACCACGCT 111583 28 100.0 32 ............................ AGCGGTAGCGCGGCGCGACACGACGACGACGC 111523 28 100.0 32 ............................ AGGCCGAGCGCGCCGCACGCAGGGCCTCGGCA 111463 28 100.0 32 ............................ ATAGTCCTTCAGGGACTGGGTCCACTGGTCGG 111403 28 100.0 32 ............................ ACGGGACAGCACCTTGCGCGACCAGCGCACGA 111343 28 100.0 32 ............................ GCCTCCATGCTTCCCGGCGGCGTTCCGCTTGA 111283 28 100.0 32 ............................ ATTTCGGCGTTGCGCATCAGCGAGCGCTTCGT 111223 28 100.0 32 ............................ GGAAGCGCTGCCGCCCAGCTGCTCGATCTGGT 111163 28 100.0 32 ............................ AGCGCCGCCGCCGCCGCGCAGCCTTCCCAGCC 111103 28 100.0 32 ............................ AACCTCATCGGCCCACTGCTTGAAGGTGGAGC 111043 28 96.4 32 .......A.................... TCTGCGCCCTCTGGGCCATTCCGCTCACCCTG 110983 28 100.0 32 ............................ AATCCAGTTCCGCCATTTGCCCAGTCCTCCAA 110923 28 100.0 32 ............................ AGTCGAGCCCATGCCGGCGAAAGAACGCCTTC 110863 28 100.0 32 ............................ CCGGACGAGAAGCCGGCGCTCAAGCAAGCCCT 110803 28 100.0 32 ............................ CTTGGACATGTTGGTCGATCCCGCGCCGTACC 110743 28 96.4 32 ...........C................ TGTTGCACTGACCTCGAACTCGCCGCCTGCAG 110683 28 100.0 32 ............................ ATGGCGAAAGGGGAATTCCAATTCATGCCCTA 110623 28 100.0 32 ............................ CGACCGCCCTGACCCTCCAGGGCGCGAATGAA 110563 28 100.0 32 ............................ ACTTCGGAACCCGCGCCGGGTAGCGTCACCGC 110503 28 96.4 32 ......................T..... ATCGTCTCCGTTGAGATTGAATTCCTAGTCAA 110443 28 100.0 32 ............................ TTGACCGGGCGCAGGCGCAGGGCCTTGCTGTT 110383 28 100.0 32 ............................ TTGCGGGAATCTCGCTTTGGTCCGTTGCCGAC 110323 28 96.4 32 ....A....................... TTGGGCACAACGGCCTCACCCCGCAGGCCCAA 110263 28 100.0 32 ............................ CCAAGCGCCGGGAGTTCATCACCTCGGGCGAT 110203 28 100.0 32 ............................ TGCGGCAACCGGAGCAGAAAGCATCTGCTGGT 110143 28 100.0 32 ............................ ACACCATCACCGGCAGCACCGGCTTCTCCACG 110083 28 100.0 32 ............................ TGCTAGCCAAGCTGGGCGCCGCCGCGTCGCCG 110023 28 96.4 32 .........T.................. AACGCCAGGGCCACGCGCCAGAGGCACAGGGA 109963 28 100.0 32 ............................ ATGATCCTGCTGGTTCTATGGGGGCTGTACTG 109903 28 96.4 32 ..............G............. ATGTCGAGGCTGATGGGCTGGTACATGCCACG 109843 28 96.4 32 ..........................G. ATGTAGGCGGCGAGGAGGTCCAGCGCTTCGTT 109783 28 100.0 32 ............................ AGCGCCGACACCGTGCACATCCAGATCAACCT 109723 28 92.9 32 ..........................GC ATGTTCGATGCATGGAAAACACCACCCCGCGC 109663 28 75.0 0 .....T.......C.AC...AC.....G | ========== ====== ====== ====== ============================ ================================= ================== 101 28 99.4 32 GTTCGCTGCCGAGTAGGCAGCTCAGAAA # Left flank : GACCCTGCTCCGCCTCCTGCAGGAAGATTGGCTCAAGGGTCTGCGCGACCACGTACGCCTCACCGGGATCAATCCGGTCCCGGAGGGGGTGCCGCAACGCACCGTGCACCGCCGGCAGTTCAAAACCAACGTCGAACGCCTGCGGCGCCGCCGTATGCGACGCCAAGGGGAGACCGAACAGCAAGCGCAACAAGCCATCCCCCAGACCGTGGAGCGCCGCCCCAACCTGCCCTATCTGCACCTGCGCAGCCGCAGCACCGGGCAGCCCTTCTGTCTGTTCGTCGCCCTGGGTCCGTTGGCGGCTACCCCCACACCGGGAAAGTTCAACAGCCACGGATTGAGCAGCACCAGTACCGTCCCGTGGTTCTGACCCAATTTCCAGGGAGTCAGTAACGCTCTTTGAAAATCAGTGGCTTGCGAATGCCCCCGGAATTTTGGGGGCATTCCTTTATTCATGGATTTCCTTAGCATTACCAATGACTTGACGTGAAATTCGTCTA # Right flank : CCTTCGACGGAATCCAGCTAGGCTAGCAGGCTTTCTGTTCTTTCCGCTCGGCAACCACTTCACTTCCGACAATCCACCCGATGTAGGAGAACGCAGGGCATACGCCTATCATCCAAAGCCAGACGACCAGCCTTGGACTTTTTCCGTGCCCCCCCTCCGCTCCTTCCTAGACAAATCCCCCACCCTGGGCCAGCGCGTCTACATCGACCCCGCCTGCACCATCATCGGCGACGTGGTGCTGGGCGATGACGTGTCGGTGTGGCCGGGCACGGTGATCCGGGGCGATGTGAACCATGTGCGCATCGGGGCGCGCACCAATGTGCAGGACGGCACCATCATCCATGTCAGCCACGAGAGCCCGTACAACAAGGGCGGCTATCCCACGCTGATCGGCGAGGGCGTGACCGTGGGACATGGCTGCATCATCCATGCGTGCAGCATCGGCGATTACTGCCTGATCGGCATGGGCGCGTGCGTGCTCGATGGCGCGGTGATCGAGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGAGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGAGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //