Array 1 678091-675483 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033040.1 Thiomicrorhabdus indica strain 13-15A chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 678090 28 100.0 32 ............................ TTTGACTGCATTTTGATTTTTTTTAGGTGCTG 678030 28 100.0 32 ............................ TTTGCACGCCGCCAACTGTTAGCGATGGCAGC 677970 28 100.0 32 ............................ AAGAATTTATTGGCCGTAACTTAACCGGTGCG 677910 28 100.0 32 ............................ GTATGCCGGAAAACACGTTTCTAATGATTCAC 677850 28 100.0 32 ............................ ATCTAGTGAAACACTATGGCGGCGGTTACAAC 677790 28 100.0 32 ............................ TAAATCCAGCGTGCGCATGAGCGCATCTGCCA 677730 28 100.0 32 ............................ ATGAGTCGGTTTTGGCCAGACAATCGGGTGGC 677670 28 100.0 32 ............................ ACTTGCACGCCTTGCGCATTGATTGTTGCATT 677610 28 100.0 32 ............................ GTCTTGATAGGCGCTATCCATGTCGCTTTGAT 677550 28 100.0 32 ............................ ATCAACATCAGGTGTTGGTACTTTTATCAATA 677490 28 100.0 32 ............................ GCTTGTTGATGAAAATGGCGATGCGGTACTCG 677430 28 100.0 32 ............................ TTCTACAATGGTCGGCAAGTTTAAATAAGAAC 677370 28 100.0 32 ............................ TAATGAAATTCTTGGAAAACCATTCAGCAATT 677310 28 100.0 32 ............................ GCATGAGTGTTTGGGTCAATGGTTGCCAGAAC 677250 28 100.0 32 ............................ AATGCCGCCATTGCCGAAGCCGCAGGCCGGAT 677190 28 100.0 32 ............................ ATAATGCTTGACCATATTGCAGACGATTAACC 677130 28 100.0 32 ............................ AAAAGACAAAGCCCCTAAAATCGTATCTGTTC 677070 28 100.0 32 ............................ GCTCCGGTTCAAGTGTCTGGAGATGGGTTTGC 677010 28 100.0 32 ............................ ACCCAAAAATTGAAACTGACGAATTCCCCAAG 676950 28 100.0 32 ............................ GTGACTATGTTAAAGGGTTTTGTCATTTAAGG 676890 28 100.0 32 ............................ TTGTGCGTTTTGCGGGTCAAACAGGGAGAGGA 676830 28 100.0 32 ............................ ACAGCAACAACCCCAACAAGGTTACGGCAACG 676770 28 100.0 32 ............................ TGAGCCGCGTTGAATTTTGCTTTTTTGTTGCG 676710 28 100.0 32 ............................ TTATGCTGAAATTTCTTGGTTTACCTGGCACA 676650 28 100.0 32 ............................ AAGTAGCTTTTTTGCTAAATCAATCTGGTCTT 676590 28 100.0 32 ............................ GTATAAATCGCCCCTGCAGTGCCGTCTGCTGT 676530 28 100.0 32 ............................ ATATATCCAAGCATGGATGTAAGTGGATTTTT 676470 28 100.0 32 ............................ ATGATATCGATCGTGCAAAACTTGAATCTACT 676410 28 100.0 32 ............................ TTTGTGGCCATGTTTCGCACCCAATAGCTCGT 676350 28 100.0 32 ............................ AACCGATTTATTCGCATCAACAATTTGATTGA 676290 28 100.0 32 ............................ ACCCGTGGCCGACAACTCAGAAACAAATAAAT 676230 28 100.0 32 ............................ GCCGCCCATACCGGCTTGAAAGTAGTTCGCTA 676170 28 100.0 32 ............................ GAAAACTCACTGACATTCTTTTTCGAGTTGCG 676110 28 100.0 32 ............................ ATTGACTTTGGAGGTTTAGAGTATCCTGAAGA 676050 28 100.0 32 ............................ AATGATAAACAAAGCTGGTGGTGCAGGCTACC 675990 28 100.0 32 ............................ GCAAAGGCAATGTAGTCTTTGTGCAAAGTGTT 675930 28 100.0 32 ............................ ACATAAAGCAATTAATATCATTGCGGCTTTTG 675870 28 100.0 32 ............................ TCCACTTCTGCAATTGTTGTAGCTCTGTTAAT 675810 28 100.0 32 ............................ TAGTCGTTCAGCTTCTTCAGGCGTAAATTCAA 675750 28 100.0 32 ............................ TGCAGAGCCGCCGAATGCTTCGACGTAATATT 675690 28 100.0 32 ............................ TATTTGGCGAAAAGATTCATGCCACCGTTAAT 675630 28 100.0 32 ............................ AACCATCAACTAAATTAAAAGTTGTCCCATCG 675570 28 100.0 32 ............................ GGCGGCTTTTCGCTTTTGTTCCGACCACCAAC 675510 28 92.9 0 .....................C..A... | ========== ====== ====== ====== ============================ ================================ ================== 44 28 99.8 32 GTTCATCACCACACAGGTGATTTAGAAA # Left flank : TTCTACAGGATTCCGAAGTCACCTATTCAGCCACACAAGAAAAAGCCCTACCGTTTCGAGAAAGCGACCCTCAAAACGCGGAAGTACAACTAACCTATTCGCTGGGACAGCTCAGCCTTCAACCGCTTGAAAATCATTTATCTGCTGAGGCACTTAATATCACATTCGACCAACAAGAACCGAAACACACAGATTATTTACTCATCGCCAAACCATTGTTAGACATTATTGATTTTTACTATCAAGGACAAACCGAGCATTATTTTGAGCAAATGCGCATCCTTAGATATCGCGACAAAGAAGGCAATCAATACAATGAATACTTAGGATGCTTATAAAAGAATACGCATCACTCTAAAACAGAAAATACAATCAAAAATCGAAAAAACTCTAAGCTATTGATTTTTATAAGCTCTTTAACAATTTGGAAAAACCATTCGTTTTTAACGAAAAAATTGATAATCGTTTGAATCAAAACGATAATCTTTGACGTTTCTATA # Right flank : GATACCGGCCGGTAAAAATCAGTCAAACGTATCAAAATACCCTATTAATTTAAAAGTGATTAACCTTTATCGAAACAATAAACCACAACATCTAACCTTCCTTTTCTCAACTTCTTTAGGAGCCTTTTTATGCCTATCGATATTCTTCCATCCAAACGTCAGGGCTTGTATTTTCTGGAACATTGCCGTGTTTCACAGGTGGATGAACATATTGTGTATTCCAAATCACAAAAGAAAGTCGTGCAATTTTTTAGCATTCCAGTCAAAAACACTTCCGTGATTTTACTCGGCAGTGGAACTAGCATTACTCAAGCCGCTGTTCGCCAACTCGGAGATTCTGGCGTTATGATTGGATTTACTGGCGGAGATGGTTCACCGCTTTTTATGGGTTCTATGTCTGAGTACCGTCCCAATGAATACTTTTTTAGCTATCTAAAAATTTGGCAAGATGAGGAAAAACGTCTTGAAATGGCGAAAGTTTTCCAAATCTATCGCGCCGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATCACCACACAGGTGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: R [matched CTTCATCACCGCTCAGGTGACTTAGAAA with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.50,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //