Array 1 12870-17125 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGXW010000019.1 Limnospira fusiformis KN contig19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================================== ================== 12870 37 100.0 43 ..................................... AATGTAGGAGTCCACCCAATCAGCGAACGAGGAAATACCCTCG 12950 37 100.0 42 ..................................... TTGGGTGTCTTTTCGCTCAAAGGAACCGTCGACATAAAGATT 13029 37 100.0 44 ..................................... TCAACGATTATGTCCGCCGGACTGATGGACGGACTGATGGACTC 13110 37 100.0 47 ..................................... CATCGATAACAGTGGTGACGTAGTAACAAGCGCGATCGCTGCTAGAG 13194 37 100.0 44 ..................................... CAGGAAAGTCTGAAAGACAAGATCGCAAGATCTCTAATCGCGGG 13275 37 100.0 42 ..................................... TTCTTTTCCTTTGAGGTCCCGGAAATATACCGGTGAGCCGGA 13354 37 100.0 40 ..................................... TTGAACAATTGATTCCGTATGTGTACGGAATGTTTGTGGA 13431 37 100.0 45 ..................................... TTAATTTCTTTTGTTTCTCTTGAACTGTGATAGGACTGTATAAAC 13513 37 100.0 49 ..................................... GGTGTTGTTTTTTGTGTAGAACAGGTCTCGCCATAAACTAACAACTCAA 13599 37 100.0 39 ..................................... TTTCCTGGTCGTATTTAGGTTTAACCCCTGATAAATAAT 13675 37 100.0 42 ..................................... TCAGATCAAAGTCAGGAGTACCTCTGCCAGAGTACCTCTGAC 13754 37 100.0 47 ..................................... GGCCCCCTGGATATGGGTGAGACTTAATTCAGCGTCATCTAACAAAA 13838 37 100.0 42 ..................................... TATATTGTACTGGCCGACGACGCCGGCGAGTCCAAACCATTG 13917 37 100.0 40 ..................................... CTTTGTTCCGCAGTGCTTGGACACGGGCAGTCACCATGAT 13994 37 100.0 46 ..................................... CTCCCTTTTTCCTCAATTAGTTCTGTTGCTTTCAAGATGGCTTCTT 14077 37 100.0 45 ..................................... ATAATTTATTAAATACCTGTCAGGCAATATGGAGTAGCCTTAATA 14159 37 100.0 43 ..................................... CCGGAGGCACATGTCTTATCGACCTATCAACTTTTCTTTTAAG 14239 37 100.0 44 ..................................... CGAAGGAGAGGGGGTTGTCGTGGGGCACTCTTGGGAAGTGCCCT 14320 37 100.0 43 ..................................... TATATCAAATACCTCAGGCCCCGTGTGGAGAAGTGTGCGTTGT 14400 37 100.0 48 ..................................... CTTTCATAAATTTCGTACCCTGCGACTAGCTCGTAGCTATCAAGCCCT 14485 37 100.0 44 ..................................... CTGTCTTCGGGGTCACCATCCCCGTCCCCTCGGTTGAATATGGC 14566 37 100.0 42 ..................................... AAATTTAATATCTCTCCATTATTAGGGGTAACATTATACTCA 14645 37 100.0 40 ..................................... TGAAGATATTTTTCCTTTTATTTGCTCTCCTAATTCTTAT 14722 37 100.0 47 ..................................... TCCCCTCCCCCCATATATCGGGATTCCTCCCGTGTATTATCAGGAGA 14806 37 100.0 42 ..................................... ATAATGCTCACAAAATTGTAGGGGTGCTATTTAGGGTTGACG 14885 37 100.0 40 ..................................... AAACCAATAACCTCAGTTACTTGTTGAGTTGGCTCTTCTG 14962 37 100.0 44 ..................................... TTGGTGGGCATAACGATCACGACAATGTTGTTCGTTTCCATTTC 15043 37 100.0 39 ..................................... GCTAGAGTTGTTTGCGGAAACTCGACAATGCGGTTGCAC 15119 37 100.0 41 ..................................... TCATTTCTTCTTGTTTTTTTAACTCAATGTAGGTACTATAA 15197 37 100.0 46 ..................................... GCTGCTTTTATTCACAGTCACTGTTAGAATCGCGCAGTTATCAGAA 15280 37 100.0 37 ..................................... AATTCTGAGGACGACTCCGATTTTGACTTTAATTATT 15354 37 100.0 49 ..................................... ATAGGTACTCGCCACCATCAGTCTCATAAACCCATCATCATCAGGGAAT 15440 37 100.0 40 ..................................... ATTAAGGAGCGACATAGTATTATATCGACGCGCGTAAGTG 15517 37 100.0 47 ..................................... CACAAAAAACACAAACGATTGCAGCGAACCGATGGTGTTGTTCAAAG 15601 37 100.0 52 ..................................... TATGGAAGTTGTGCCAGCCACTAATGCTCTAGTAACAGATTTTTCTGTTACT 15690 37 100.0 43 ..................................... ACAATCACCATGGCAGATAACACAGGTCATTTTGTCCCTACTT 15770 37 100.0 47 ..................................... TTGCCTCACCGACAACTGGTTTTTCCAGAATGAACACTATTCGCAGT 15854 37 100.0 37 ..................................... ATTTTTAATTCATTTAATTCTGATATTAACTCCGATA 15928 37 100.0 40 ..................................... ACAAATCATTAAGGATTTGATTTTTGACTAAATTACTCCA 16005 37 100.0 40 ..................................... CCATCTTTCTAGCCAGGCTCTATCAGTACCCCGGTAGAGT 16082 37 100.0 41 ..................................... CCCCGAACCCTAGCCCAATAAAGGAGTCCATCTTTTTCTAA 16160 37 100.0 41 ..................................... TTAAATATACACTAGAAAAATGATAAATACTCATACCTGGA 16238 37 100.0 48 ..................................... ACGATTGGGTTTTCCAGTGCTTTCTCAGGAGTTAGATTGTCATCAATG 16323 37 100.0 43 ..................................... TAGGATTAGCTTTCCTCCGGTGTTAATTCCTGCAATCTCCTTG 16403 37 100.0 39 ..................................... AGCGATTGCTGTGAGGAGGTAGTATTGGAGCCAAGTCAT 16479 37 100.0 37 ..................................... CCATTTCTTCTAGCTCCTCTAGCTCCTCTGGATTAAA 16553 37 100.0 43 ..................................... GCATCGATACATCATTTTTTTCTCCGTCCCGGTATTGGATAGT 16633 37 100.0 47 ..................................... ATTCCTGGCAGAATGATTGGAGACCAATCATTCTGCGGTTTAACCCA 16717 37 100.0 40 ..................................... AAGTTATCGTACTCAAAAAAATGATTATTGATTGCTTCTG 16794 37 100.0 40 ..................................... TTGGCAATAGAAGGGGCTGAAGGAGCCACCTGAGTTTTTG 16871 37 100.0 47 ..................................... TAACTGTAGTGCTTTTCTGCAATCTGAGAGCGCTCGGTGTCCGCCAT 16955 37 100.0 30 ..................................... GGCGCGATCGCCCTCCATTTTGGCGTCAGT Deletion [17022] 17022 37 91.9 30 .........G...........AC.............. GGCGCGATCGCCCTCCATTTTGGCGTCAGT Deletion [17089] 17089 37 89.2 0 .........G...........AC.......T...... | ========== ====== ====== ====== ===================================== ==================================================== ================== 54 37 99.6 43 GTCCAACCCTACCAATTCCCCGTCAGGGGACGGAAAC # Left flank : CCTGGAGGAAAAAATTCTGGAGGACTTATTGAATAAGCGGTGGCTAAAGGTTTTGAATTTAGAAAAGGATAGTCTGCGGGCTTATCCCCTCAATCCCTCCACCAAAGCTCAGGTTAAGGTCTACGGGGGACCGCTTCCCTACGAACCACCAGACTTTCTCATTTTGTAAGGGTTGCGATCGTCTCATTTTTCATCACTTTGGGGCTGAAATGCCTTTGAGCCAATGATTTTCAGCAATGTAAAGTTATATTGCATTTTTTAATAATATGGCGCGACGAGGATACAACAGAAACCTGATATAAACTTGAGCTAAAAAAAGAGAAATTTGTTTTTTGGGGGGTTGACAGTCTCGCACAACTCCTGATAATATAAAAACATCGCAAAACAAACGAATTTACTCGCGCCAAACAGGCCTGTAAAGTTTTGTTAAGCACCTTCTACGTGCTCTCGCGCAAACGCACCTTGAAAACCGCATACTGTAAGGTTTCCAAAGGTATAGG # Right flank : CCCGCGATAAAACCGAGTGGTCAAAAAAGCGCCAATGGTGAAGTCTTGTTAATCAAGGTGTGGGGGGGGGTTGGGAAACCGTGTGAGGAGAAGATATTTCCCATCAATTAACCTTCCACTTCCTGATTAGTTGGTTGGGGGGAATTTCCTAACCTCACCTGCTTACCAATGAGACTTAAAAAAGTCGAACCAAAATGCTGAATTTCCAGAAAGTTAGCATAAGCAGGCGCGGGTTTATAAATCCTAAAACTCTTCATAATTCCCAGCGTCGCCGCGCTTTCCAGGGGACCCACAAAACTACTATCGCGGTCTAAAAAATAAGGCTGTTTTACCCAATGTTCCATCTGGTTATTATTCAGGAAATAACAGCCAGCGTGGGGGTTTAAGCTGCGATTAAATTGAATGGGTTGTTCCATCACTTTACCCACCAATTGGGGGCGATCGCGTATATTTTGAAACTTCGCGGTTACATGGGGTAATAAATCCCCATCCACATAGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCAACCCTACCAATTCCCCGTCAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 1 3266-2359 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGXW010000100.1 Limnospira fusiformis KN contig100, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =============================================== ================== 3265 35 100.0 35 ................................... GATCAATTGATGTAGGATCCTGATCGGAGTTAACC 3195 35 100.0 35 ................................... TTGGAGGTAACGGCCCAGGCTCAGGGTCTGGCCTT 3125 35 100.0 39 ................................... GACAACTAACAACATTAGATTCCATGCTATATGGTTCAA 3051 35 100.0 37 ................................... AAGAAGGTCCCAACAGATGTGTGGGATTACCATTTTG 2979 35 100.0 34 ................................... AGAAGAGGTATTTGGTTGGCATCCAAGCGAAGCT 2910 35 94.3 33 .................................TG CTTTTCTTCTATTATCCCCTGGTTGAGGATAAG 2842 35 100.0 36 ................................... TTTTTACATTCTTGTGTGTTACCCAATTGTTCCAGT 2771 35 100.0 37 ................................... AGACCTTGGTGTGCCAGCGCCAGGTGTGCCATGTCCA 2699 35 100.0 38 ................................... AGTTTGGACGGTACTGGTACTATATAGACCTCTAACGG 2626 35 100.0 35 ................................... GTTTCCGATTCTTGCCGGCAGATGTCCTCAACCCC 2556 35 100.0 47 ................................... GAGTTTGGACGGTACTATATAGACCTCTAACGGAAGCAGAGTTCCGT 2474 35 100.0 46 ................................... TTAAATTAGCTGCCCCCCTAGCCCCCCAACTTTGGGGAGAAATATA 2393 35 85.7 0 T...C................C...C.......C. | ========== ====== ====== ====== =================================== =============================================== ================== 13 35 98.5 38 CTTTAAACTTCTTTGAAAGTTAAACGTATGGAAAC # Left flank : TGAGGAGTTTCGCGCCCCGGTGGTGGATTCGCTCGTTATCTATCTGGTAAATTCGGGAATTTTTACCCCGGAAGATTTTACCCCAAGTGACGAACGAGGTGGGGTTTATCTTTATTCCGATGCTCTCAAAAAATATCTGAAGCATTGGCAGGATAAGCTTTCTTTGAAAACGACTCATCCTCATACGGGTTACAAGGTTAGCTACTATCGGTGTTTGGAGTTGCAGGTTTGGGAGTATATTTCTTGCTTGATGGGAGAGCGGGAAGTTTATCGGCCTATGAAACTGGAAAAGTGGTAAACTAGAGTTTCCGGAGGGGTTCGACAACTGCTCAAACCTGCATTGTTTCGTTAACCCCCCCGGAAAGCCTTCTCTCTCTGAGTTTGAGGGATTCTGGAGAGTATTTTATTGCAAATATGTCTCAATTATTTTGGTGCTTGCTTGACCCCCCCGGAAATGGAATGTTACACTCCAGTAATAGCAAGGGTTTCAACTCGGCACT # Right flank : CCCACCAACCTCCCCCTAAAAGGATGAGGCCTAATTTTTTTGCTGATTTGAAAATTCAACCTATAGAGCAAATAACTAAAAAAAATACCCCCCAAGTAGAGGGTATATTATTAAAATAAATTCAGTTTCTTTCCATACTTGATACCGGCTTAGAAGTCAAAGTGCTGCTATTTTAAAATGGGTTGTAAACCACTTAATATTCAGCTTGAGGAACCAGCTTTTGTAAAAAGTCATGTTTTTCAATTTGAGCTTTTACCGATTGAAAAGTTAATAATGTTCTTCCTTTCTCGCCTTTTTATGACTAACAATATAGACTCCCCAGGGCAGACGAACTCCTGTTAGAGTCGTGAACTTGAACTGAGCGTGTTCCGGGTTAGCAATATCCAAATCTGCCCAACTCAAATTGGTATTTTGTAAGTTCGTCTGTGCTAAATTTGTACCACTGAGATTCGCCCAACTCAAATCCGCATCCCTGAGATTAGCATAACTTAAATTCGCCC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAAACTTCTTTGAAAGTTAAACGTATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 2 8327-7989 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGXW010000100.1 Limnospira fusiformis KN contig100, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ================================================= ================== 8326 35 100.0 39 ................................... CATTATCTGCTACTTCTATACTTGGTAAAATACCACCTG 8252 35 100.0 41 ................................... TAGTTTTTTCCTTCCTCCCTCTTATCGCGCCTCCCATCACC 8176 35 100.0 34 ................................... AGTAGAGTCCCATCTAACATAGTAAAGGGGCGAT 8107 35 100.0 49 ................................... ATTAACCTTCTGCCGTCTCCTGGTTGGGGGTAATTTGGGGGGTTACTTT 8023 35 88.6 0 ............T........C...C.......C. | ========== ====== ====== ====== =================================== ================================================= ================== 5 35 97.7 41 CTTTAAACTTCTCTGAAAGTTAAACGTATGGAAAC # Left flank : TTTCTTGATTCATGGAGCAAAGGGAATCTCTAAACAACGGATGGAAGATGTGCGCTCAGAAGATTTAAAAAATCCCAAGAATCAGAAGATTAAAAATACGGTTCGTGTTTCCTGTTTACCCACAGAGATTATAGCACAAATGAGTCAAATTTATTGCTGTTTCGTTGAGTTGGTTTCACTTTCTGGCTTTCCAAATGTACAAGATTATCTAGAGGTGAATCAGGAAACGCGCGATCCGATTGAACCCTATTATCTTTACTCGGAAATTAAGGAATGGGTTGGGCAAATTTTGGATCACGATCAATAATCTTGTGGGGGTTGAAGAATCGCTGAAACCCTGATTCTTTCGTTGACCCCCCCGGAATGCTTTCTCTGTCGGAGTTTGAGCGATTATTTATACCCTATTATTGCAAATATGTCTCAATAATTTGGGTGCTTGCTTGACCCCCACAAATTTGAGTGCTAGAGTACAGTCAGGGCAAGGGTTTCAACTCGGTAGC # Right flank : CCCACCAACCTCCCCCTAAAAGGAGGAAGCCTAATTTTTTTGCTAATTTGAAAGTTCAACCTATAGAGCAAATAACTTTAAAAAAATACCCCCAAATTTGAGGGTATATTGTTATAACTAAATTCAGTTTCTTTCCATAAGTTAGACTTGCTTAGAAGTCAAAGCGTTGCTGTTCTCAAATGGGTGGTAAACCACTTGATATTCAGCTTGAGGAACAAGCTTTTGTAAAATGCGCTGATGATTAACTGCATCATTTTGTGAACGAAAACGACCCACAACCAAACACTGATTATTAGTAACAGATTCTCGTTCTGAGGCGTTTGCCGATCGCACCAAACACCAGGGATGCAATCTCTCAAAAGCTGTCATTGCTCGTTCTCCTTACGCTTTGACCCCACGATAAGCCCAAGAATTTGCACAAAACAGGGCAGGCTACCCTTGACAAAGTTAACTGTTTGTGCAGTTGAACCGCTCCTTGAATTCGGTCGGTAGCTCGTCCC # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.02, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAAACTTCTCTGAAAGTTAAACGTATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 6838-8642 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGXW010000127.1 Limnospira fusiformis KN contig127, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================== ================== 6838 37 100.0 43 ..................................... CCGCAGAAATGTGGGCCATATTCAATAGGGGGGACGGGGATGG 6918 37 100.0 39 ..................................... AATGTTTATCAAACGCCCGCGAACAGAAATAACGTTAGT 6994 37 100.0 45 ..................................... AATACGTTTGGATCATGGCTTTCGCCATGATCGACTCGCTAGAGA 7076 37 100.0 50 ..................................... ATAGGAGAACTTCGTCGCCTTGGGTTATCCCCAACATGGGGAAACCCGGA 7163 37 100.0 46 ..................................... ACTTTTAAAAGAATTTCATACTCTCCTGCAACCATTTGGTGGACTT 7246 37 100.0 46 ..................................... TACCTTAGAGTAGGTTGTCGCTGGAGAGTTTCCTTCCAAGTGACGT 7329 37 100.0 49 ..................................... GTAGATGATTTCTGCCTGTAAGTAGGCCACTGTCTCCCGGAAGTCCCGG 7415 37 100.0 46 ..................................... TTGATATCCTTTGACTTCAATTTCAGTTTTATTCGTTTTTTTAAAT 7498 37 100.0 46 ..................................... GTATTCTGTCCAACACGCTTTAATCACTTCCCAATCAAAGTAAAAT 7581 37 100.0 43 ..................................... AAAGCACTTTTGTAGCATTTGTCAAGTCGGTGTCTCGCCAAAT 7661 37 100.0 40 ..................................... AACTTGTCCAGTGTAGTATTCTACTAGACGTCTGAACCAA 7738 37 100.0 44 ..................................... TAAGAGATTGCCCTACAAAAACTGCTTGTCCTGGACTACCTCCA 7819 37 100.0 43 ..................................... TCGATTGCAGTTCCTACAGTCGCTGCCACGATTGCGGCAGCGT 7899 37 100.0 38 ..................................... CCGGGTGTGTCACCATGTAATTAGCAAGTGCTTTTTGT 7974 37 100.0 39 ..................................... CTCCTCTTTAAGGTAGTATCTAAGTGCTTTTTTCTTAAA 8050 37 100.0 41 ..................................... CAGGCAGCAAAATGTGCAATGGATTGAAAATAGTACCGGTA 8128 37 100.0 42 ..................................... AGGCAAACCCAGAAAGGTACAATTTGGTCGTACCCTTCTGTT 8207 37 100.0 44 ..................................... GTGGCACGGATTGTAGTGCCTTGGTAATCAGCGGTGAAAAATGA 8288 37 100.0 43 ..................................... CCCTCCCAATCTGAACTTTGCCAGACAATTCGACCATTTTCAT 8368 37 97.3 42 ....G................................ CCATTTAAGCAAGCCAACCTTTCCAAAAACTCAATTACTTCA 8447 37 100.0 43 ..................................... GACCAGAGAGTGGCGTTTGCTTTGACTTCGTAATATTTACAGC 8527 37 94.6 42 ....................G.........G...... CGACTAATAGCCCCGATATTAGTGATGAATGACTGCAGCCGT 8606 37 86.5 0 ..G.........A........A.G......G...... | ========== ====== ====== ====== ===================================== ================================================== ================== 23 37 99.1 43 GTCCAACCCTACCAATTCCCCGTCAGGGGACGGAAAC # Left flank : AGGTGATTAATCCACCATTGTACAGGTGCATTGGATTCAGTTAAACGCGCTACGGACAATCGGGATATTTAATTACCCCTCCGACTTGACTCTGGCTGCTACGGTTTTGCTTAATTGTGGCATCGCCCCTGTCCCCCGGATATGGTTGGCGAGGTGATTCTCATAATTATTTCCGTTTTTTGGGGCGATCGTGCCTACTTAATCGATGGATTCGTTGCAGGGTAATGGTTTCGGCTTGTGTAAAGTTATATTACAGATTCTCATAACCTCGCGCGACTTCTAATCCTGCCCTAGTTAAAGCAAACTTTAGCCACGCGAAGAAAAGTTTTTGTTTCGGGGGGTTGACAGTCTGGCACTATGGCTGATAATATAAATCCAGCGAAAACAAACGAATTTGCTCCCCGAAAAAAGGGCTGTAAAGTTTTGTTAAGCACCTTCTACGTGCTCTCGCGCGATCGCACCTTGAAAACCGCATACCGTAAGGTTTCCAAAGGTATAGG # Right flank : CGCCCGGTGGTGTGTGGATGTTGTGAGGGTTGAGGTGGTGTCATGGCAGGGTAATTTCGCAGTTGGGGAGGGGGGAAAAAGACGAGTCTGGGGGATAAAACTTGTTGGGGGTGTAGAAGGGTTAGGGTTGGGTTGAGGCGTGCAAAATCCGATTAATAATGCCACTGGTAGAAGTAGGCATTTCCACGGCAATGAGGACGATTTTACCGTTATAGGCTTTAACCGTGGGGGCCTCCGGTAGGGTGTCAATCGTGTAATCACCACCCTTAACATATATATCAGGTTGTAGCTGTTCAATAATCGCCGTAGCAGTGCTTTCTGGAAAAATGACCACTGCATCTACCGGTTTTAACTGGCTGAGAACTTCGGCTCGCTGTAATTCTGGTATAATAGGACGGGGAGGATATCCCGCCGAGTGGGGTTTAATCAGGCGAACAGAGCGATCGCTATTGAGACCCACTACCAGCGCGCGCCCCAAACTTTTGGCTTGGGTCAGGTAG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCAACCCTACCAATTCCCCGTCAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 1 22880-21164 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGXW010000048.1 Limnospira fusiformis KN contig48, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================================== ================== 22879 37 100.0 42 ..................................... CACCGCTGTCCAGACCTGTCGATTGTGAGTTGGAAATAACAA 22800 37 100.0 39 ..................................... GTTGTCAAGCGCTTCGTCATTTGGATACACGGCGATAAC 22724 37 100.0 40 ..................................... TCGATGCACAGTTTGGTCAACATCGCTGCGAATTTCTCCG 22647 37 100.0 38 ..................................... CTATTGGTCCCCATGGACCTCCAGATCCCTTTGATACA 22572 37 100.0 44 ..................................... ATTAATATTAGTTCATATTTAGTAAATGAATTAATATCTTTTTT 22491 37 100.0 41 ..................................... CCTCTTTTCAATCTCTCGATAAGCCGTTAGAATAGCACGTG 22413 37 100.0 42 ..................................... CTTCGACCAGGCAGTAACCTCTATAATTCCAAATCTTATTTT 22334 37 100.0 43 ..................................... CGTGCAAATCATAGATGAGTGTAGTCTAGTCTGTTTAAGATTT 22254 37 100.0 51 ..................................... TCGCAGAATAATAGCTCCGTTTTGTGGATTGACAACAAATGTGTCAATCTC 22166 37 100.0 39 ..................................... TGGATAAATTGATACACCACGGCGGCGTAGAGGTTCAGT 22090 37 100.0 37 ..................................... GTTATCCGGTCTGTATAAAGTCCAGTTACATAAAAAT 22016 37 100.0 40 ..................................... ACTAAAGTATTTTAGGCATTCAATATATTGTTTTTGAGTG 21939 37 100.0 42 ..................................... GTGGTGAATAGTAATACCCGGAGGACTGGCCCCAAGCAACTT 21860 37 100.0 49 ..................................... CTGTGAGCTCTGGAGCCAATGGCACCGAGGCTTGAGGGGCATACTTCAG 21774 37 100.0 48 ..................................... ACACTTGGGGTTTACTTGCATGACTATTTCCATGTCAGGCGCTTGCGA 21689 37 100.0 43 ..................................... TTTGAGTGCGTTTGTAATCATCTGGCGGCGGTTTTTTGAGATG 21609 37 100.0 45 ..................................... TAGGACTAGAAAGAATTAATATTTTAAAATCAGGATAATATGTTT 21527 37 100.0 41 ..................................... GATGATTTAAACAGCTCGTAAGCTGTTTGGGGAGGCTCTGA 21449 37 100.0 45 ..................................... TTGGGTTGTCATACCCAAATCGCCAAACCACTCAGAGTAGTTTAG 21367 37 100.0 48 ..................................... GTGGGAGAGAGAATTTATTTCTGCATTCCTTGGTATTTAGTAGCTATG 21282 37 100.0 45 ..................................... ACTTTTAGACGGAAGTTTTCCTCCTCGTCCGTCTGGAACTGGACG 21200 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =================================================== ================== 22 37 100.0 43 GTCCAACCCTACCAATTCCCCGTCAGGGGACGGAAAC # Left flank : TCGTTGATTTGGTGGCTAATCTTGGTGACAGGTTTCCCCACAGCCAACTACACCTCACGCCACCCCTAGACCATAGCCCACACCTGGGCGATTTGATTTGTACTTGGGCGGAATCTTGCCTCTAGGATACCACCTGCCTGCTGCAGTGGGTGGTGATTCTCATAATTCTTTCGGTTTTGAGAGGCGATCGACACTCCCTAATGGCTCTGTTGCCTTGGGGGTAATAGTTGCGGGGTTTGTAAAGTTATATTACAGATTCTCATAACCTCGCGCGAGTTTGAATAGGGCGATCGTTCAAGTAAACTGGAGCCAACAACAGAAAAGTTTTTGTTTTTGGGGGTTGACAGTCTGGCGCTGTCTCTGATAGTATTAATTTACGTGAAAACAAAGGAATTTGCTTCGACAAAAACAGCCTGTAAAGTTTTGTTAAGCACCTTCTAGGTAGTCTCGCGCGATCGCACCTTGAAAACCCCATACTGCAACGTTTCCAAAGGTATAGG # Right flank : CGTTTCCGCTATTTTGGAGCCAACCAAACCATTGAGCCAACCGGACGATCGCATTTCCCAGACGAGGAAAGCGAAACTGCAGAAATTAGTTAATTTGGAGAGCGATCGCCAGGTATAATTTTCTGTGAGGGAATTAACTCAATCCATGGCACCAAGTTCATTGACACCAGAAACACACCTACCAACTTTCCCCGTTTTGGGATTACCAGTACATCTGGCTGATAATTATAGCCAGTGGCTGTCATCGCGGCTGAGTCAGGGTTTGGGAACTAATGTCATCACCCTCAATGCTGAAATGGCGATCGCCGCCGAATCTAATCAACCCCTAGCCGAATTAATCCGAAACGCCGACCTAGTAATTCCTGACGGTGCGGGGGTCGTGCTTTATTTAAAATTCAAAGGACACCCTATCCAGCGTTGTCCGGGAATTGAATTAGCCGAAACCCTCCTCCATGAGTTTAACCAGCTAATACCCTCTGGATTGGTGTTTTTTTATGGTG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCAACCCTACCAATTCCCCGTCAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 2 25926-24118 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGXW010000048.1 Limnospira fusiformis KN contig48, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================== ================== 25925 37 100.0 45 ..................................... AACGATGACAATCACCAACCAAACGTGGTTGGTTGGGGATACAAG 25843 37 100.0 44 ..................................... TTGGCTATGACATTAGAATCCTTCCGGAAATCGAACCCGGCCCC 25762 37 100.0 43 ..................................... TCTCCTCCTTTAATTTTCTTTAATCTTACTAATTCTTGTAATT 25682 37 100.0 44 ..................................... ATAAGCACATAAGAAGAGTGAGGAACGTCGATGACCATAGAAAC 25601 37 100.0 40 ..................................... TTGTACTCCATCTAGTTCGTAAAGTAAATCCACATACGCA 25524 37 100.0 41 ..................................... TTGTTGAGTGTGTTTGTGTTAGTCTCTAGGGCATCTTAACC 25446 37 100.0 41 ..................................... TTGTAATATGACACTGATGACACACCGCCGGGACAATAACT 25368 37 100.0 45 ..................................... TTCTTCCGGGGTCAAGAGGTGGAGCAGATCCACCTCCTTTTTCCC 25286 37 100.0 44 ..................................... GTAATAAGTCGTTTCGAATAGGGTATAGCCTCTATAAACCCAAG 25205 37 100.0 40 ..................................... AAACCGAAGTTTCTCAAATTTATTTTCGGTGTCTTTGTCT 25128 37 100.0 41 ..................................... CTAAAATCCAGGAAACCTCCTCTTTGCGGGAGCTATATTGT 25050 37 100.0 45 ..................................... TAACATTTTTGCTGTTTCAATGTAGCCAAAAAAGATGCAAGAATA 24968 37 100.0 39 ..................................... ACTCATCTAAATCCAAAAAGCAAACCCATCCAAAATAAT 24892 37 100.0 45 ..................................... TCCCATGGCTCCAGTTCGAAGTCCCCCTCTTTCCTGGTCCCCAAC 24810 37 100.0 48 ..................................... TGATATTGCGTTTAGGTTTGGAGACATGGGTATTATAAGGCAATTCGA 24725 37 100.0 45 ..................................... TTGGTAGCCGCCATTCCTCGAGAAGCCTCGACTTTTGGTTGAGGT 24643 37 100.0 50 ..................................... AAATTCATCCTTTTCATTTAGAGAAAAGTTTTTTAAATTTTCTTTATTAG 24556 37 100.0 47 ..................................... AAATTAGGGATTAAACCTTCGTGGTACGCGAAATCTTCGCAACTACA 24472 37 100.0 42 ..................................... AAGACAATAACTCCTGGCAGAGAGTAATGTCTTCCTTTATAA 24393 37 100.0 45 ..................................... CTAGTTAGGTAAACTCGACAGAAAACTTGAGAAAACTTCCCACAT 24311 37 100.0 39 ..................................... TCCGAGTGAAGGACCCGAACTTGTCCACAATAATCTGTT 24235 37 100.0 44 ..................................... GATTTGTACAATGCGATTTTTGTGGATGCTTTAAAAAAGTTGTA 24154 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ================================================== ================== 23 37 100.0 44 GTCCAACCCTACCAATTCCCCGTCAGGGGACGGAAAC # Left flank : TCGTTGATTTGGTGGCTAATCTTGGTGACAGGTTTCCCCACAGCCAACTACACCTCACGCCACCCCTAGACCATAGCCCACACCTGGGCGATTTGATTTGTACTTGGGCGGAATCTTGCCTCTAGGATACCACCTGCCTGCTGCAGTGGGTGGTGATTCTCATAATTCTTTCGGTTTTGAGAGGCGATCGACACTCCCTAATGGCTCTGTTGCTTTGGGGGTAATAGTTTCGGGGTTTGTAAAGTTATATTACAGATTCTCATAACCTCGCGCGAGTTTGAATAGGGCGATCGTTCAAGTAAACTGGAGCCAACAACAGAAAAGTTTTTGTTTTTGGGGGTTGACAGTCTGGCGCTGTCTCTGATAGTATTAATTTACGTGAAAACAAAGGAATTTGCTTCGACAAAAACAGCCTGTAAAGTTTTGTTAAGCACCTTCTAGGTAGTCTCGCGCGATCGCACCTTGAAAACCCCATACTGCAACGTTTCCAAAGGTATAGG # Right flank : TAAAAAAGCGATCGCCTTCTGCTTAGAGGTAAAGCAATACGAGTCCAACCCGACCGCTTGTTGTACAATGTACGCCGGGGATGGGTTAGACTGATTGACTGAAGTTTCATTAGTAACCCGTGTTATCCACTGTTTTGCTTGTGTCCCACGGTAGTCGCGATCGCCGCCCTCAATTAGCTGTAGATAAGTTAGCACAACAGTTGAGCGATCGCCTCAAGGTGACTCAGGGTGGGGATAGTTTAACTGATTCTTTGGTGGGAAGTGCGGTTTTGGAGTTGGGACCGACTCCGCTATCTGCACAAATTCACCAATTCGCTGAGTATAGCCTGAGTTTAGGGATTCATCGAGTCCAAATTCTGCCGTTGTTTCTGTTACCTGGGGTCCATGTGGGAGAAGATATCCCCACCGAGGTGGAGTTAGCCCAAAAATCCCTGGGAAGGGAGATAGAAATTTACCTACAACCTTATCTGGGAAGCCAACGCCAGCAGTTGTCTGTACTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCAACCCTACCAATTCCCCGTCAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA //