Array 1 6112-6337 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CAAKNX010000097.1 Enterococcus avium isolate Enterococcus_avium_MC1, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence               	Spacer_Sequence                     	Insertion/Deletion
==========	======	======	======	==============================	====================================	==================
      6112	    30	 100.0	    36	..............................	CATACGACTTCCGATTCCCCAAAAATCGTCTAACTC	
      6178	    30	 100.0	    35	..............................	GCGTTTCGAGAATCTCGTTGCATTTTCCCGATGAC 	
      6243	    30	 100.0	    36	..............................	ATGTAATCCGTAATATCACCAACGGAAGTATAATGG	
      6309	    29	  96.7	     0	.............................-	|                                   	
==========	======	======	======	==============================	====================================	==================
         4	    30	  99.2	    36	ATTTACATTCCACTATTTTTAGATTTAGAC	                                    	       

# Left flank :   TAAAATGTCATTTTTGTAGGAAATCGCAGGAATCTCAAAGGTAAATAACGCATATCGTGAAAAATCAAGATTGTTTCTGCCGTAAAGATACGCCTGAATATCCGGCCACACCCAAATCAGATCGCGATCTAAAGGAATAATCATACGTTTTTCAAATTGTCCTTTCATCCATTCTAATGCCCACAGACAATTGGTGCCCTCTTCATCACCTGTAAAAATAGAATTTTCTGGATCTCTTTGAGGTACAATAAACCCTTGTGAATCAGAATGTGTTAAAAAACTTCTTTGTTGAATCGTATATACTTTCATGTTTTCTTCCTCGTAGTATGCGGATTAACTCCGATAATCTTTAAAGCTTACTTGATGCAATTAGTACTCCAATATTTTTAGATTTAGACTGTGATTTTTGCAGGAAACAAATTGTATGCTAAAGAATTTACATTCCACTATTTTTAGATTTNNNNNNNNNNTACAGTAATCAGATTTCTACTAACATAGAA
# Right flank :  |

# Questionable array : NO	 Score: 2.82
# 	Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     ATTTACATTCCACTATTTTTAGATTTAGAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:76.67%AT]
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  NA [-0.10,-0.10] Score: 0/0.37
# 	Array degeneracy analysis prediction:      F [0-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [63.3-0.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [0.68,0   Confidence: HIGH] 

# Array family : NA
//


Array 1 81926-82162 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CAAKNX010000103.1 Enterococcus avium isolate Enterococcus_avium_MC1, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
     81926	    36	 100.0	    30	....................................	GAAATTATCATTGACAATTGAAAAGTTACT	
     81992	    36	 100.0	    30	....................................	TGGGATTCTGTCATACCATTTGATCTATTG	
     82058	    36	 100.0	    30	....................................	AATGCAAGTTCCTACACAGCGAAACTAACC	
     82124	    36	  83.3	     0	..............C..........A.GGA.....A	|                             	A,A,T [82149,82152,82160]
==========	======	======	======	====================================	==============================	==================
         4	    36	  95.8	    30	GTTTTAGAGCTATGTTGTTTTGAATGCTTCCAAAAC	                              	       

# Left flank :   AGTTGGATTTAGAAAGTGATGAGATCACTGTAATGGAATTATTCAAGGCTCTGGGAATAAAGATCGAGACGAAGAGTGATACGATTCTTGAAAAACTGACTGAGGTTGTTCAAGTGTTTAAAAATCTTTCGAAGAAAAAGTTATTGGTATTCGTAAATACTTGTTCTTATCTAACTAGGGAAGAGTTAATCGAATTAAATAATTATATTTCGTTGTATGGGGTTGATGTTCTTTATTTAGAGCCAAGACAAGTCACTGGCTTTAAACAATATGTTTTGGATGAAGATTACTTTTTAGAAGTGATTGAATAATAATTTTATGGTTCTTTGATAATTGAATAAAAGTGCATAATATGAAGCATTCAAAGCTGAACCCTTGCTATGGATGAGTAGCGCGATTACGAAACTTTTTAGAAAAAAGAAATTGTCTACGAGGTTTTAGAGCTATGTTGTTTTGAATGCTNNNNNNNNNNCTAATTGAATGCTTAGAAGAATTGGAAG
# Right flank :  AAAGAACGCTGCCTACTTCTCTTTTAAAGAAAAGCAGGAAGCGTTTTTTAATCTAATACTTCACCATTATCGCCAATGGAATCGTCTGAAGTTTCCCCTTCCGGTTTTTCATAATGGAAGTTTGATGTATCGTATTTGAAGTTGTATTTATTTCCTAAGAAGTACTTCGCGATGTGTAATGTGCGATCGCTGGAACGTTCAAGGTTAGAGCTGATATCGATCAGTAAAACACCATCTGCGGCACGACCTTCGCCCTTGGTCATTAGGCGAATGTATTTTTTACGCAGTAATTCTACGAGTTCATTGATATTTTCTTCACGGTCTAACATTTTTTGTGCAAGTTCGATATCGTCATTTTCTAAGACTTGCAGGGCATCGCGTATATTTTTTAACACTTTATCAAAAAGCAATTCAAGATGTTCATCGTGAAGCAAGAAGGTCTCACGGTTGCTATTGGATTTGGTTCGATTCCGCTTATCTTTTGCTCGTTGTTTCTCCTC

# Questionable array : NO	 Score: 5.65
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTATGTTGTTTTGAATGCTTCCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:66.67%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGAGCTATGTTGTTTTGAATGCTTCCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-2.20,-0.80] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-9] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [55.0-68.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.28,0.27   Confidence: HIGH] 

# Array family : II-A [Matched known repeat from this family],   
//