Array 1 3923519-3924029 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001982.1 Dickeya dadantii NCPPB 3537 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3923519 28 100.0 33 ............................ AACTAGCGCCACCACCGGGCGCACCACGTCGAA 3923580 28 100.0 32 ............................ GGTACAAACCTCGGCAAGAAGGGTGTGAAAGT 3923640 28 100.0 32 ............................ TGTAGCGCCTGATGCAATCACAGCATTAGAGA 3923700 28 100.0 32 ............................ AGACTCAACAGAGTTACCGCCATCAGGGAATG 3923760 28 100.0 32 ............................ TTTCTCGGCCGTCTTCCCATTGCCCCTCGTCA 3923820 28 100.0 32 ............................ ACCGCTGGTGATTCATCTGGCAAAGCAGCAAA 3923880 28 100.0 32 ............................ GCCTGCGCGTATGTCAGTCGGCAGGCGGTGGC 3923940 28 100.0 33 ............................ TCTATCCATTTTGTTTTTCCGCTCTACGCCGTC 3924001 27 78.6 0 A..........C.C.........-..CC | GG [3924021] ========== ====== ====== ====== ============================ ================================= ================== 9 28 97.6 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CGTCACGGAAATCCCGCCCATGGCGATATCGCACTTGCCGGACTGAAAATCCGGCATCAGGGTTTTCCAGCTGGTTTTTACCCACTCCACTTTTACGCCCAGGCTTTTAGCCAGCGATTGCGCCATAGCGATATCGATCCCTTCATAATCGCCATCGGCGCGCAGCGACGTGTACGGCTTATAGTCGCCGGTAGTGCAAACCTTCAGCACCCCTTGTTCCTGCACCTGATCAAGATGAGACGCGGCGCTAGCGCCGCCGGCCAGCCCCAACAACAGAATGAGTGAAAACCGTTTTTTCATGAGAGTTCCTTGCAAGCCTGTCAGGCAAAAGCGCCACTGTATCATGCCGTTTCTACGGCTGCCGGTTTTGACCCTTTTTTTTCGCCTTGTTATAACTCATTGATTTTTAATGACGACAATGATCGACGTTAAAAAAGGGTTTTCCAGGAAAAATCACGATTTCCCTTTTAAAATCAGGAAATAGGCGATAAATTGCTACG # Right flank : CGGTTTGCTGGCGTTAAAAACTACGCTGAGGTGGGCGACTTCGCCGGATGCACGGCATGGATGCCGTGCAAGCCCATTCCGCGTCTGACAAAAACGCTGGGAGCGTTTTTGAACAGCGTTTACGCTGGCCCGAAGGGCGAGCCCCAGGGATGGGGCGAGTAAACGCGTAATGGGCGGTCCGAATAGCGAAGGCGAACGCCGAAGGCACCGCGCCAGCGGCGTAGTTTAGCCACCAAGCCAGTGTGGTCAAGGAGAGGTGGCACCTGAACCTCTCCTTGTCGTGCGTGCGATGAAGCAGCAAAGAAATTACACTGTTTATCCCGCACGAAACCACTCACCGACCCTGCATAAATTCGACAAATGATTCACTTACTCGGCATAAATCCGACAGCAGTAAAGCCCTCCGCTGTTTACCAACAGCCCCTTCCCCTTATTCCGCCGTCAGTGCCGACACCGCCCCTTTTCGCTTTTTGATGGCATAGCCGGCGGCCAGCGCCAGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 3930143-3929935 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001982.1 Dickeya dadantii NCPPB 3537 chromosome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3930142 28 100.0 32 ............................ GCACAGGATACGCTGAGTCGTCTTAGTTACGG 3930082 28 100.0 32 ............................ AAGAATGCCCGCACTGACAGACGGCCAGATAA 3930022 28 100.0 32 ............................ TCTGGCAATCGGTCGATGCAAATCACCTTCGG 3929962 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 4 28 100.0 32 GTTCACTGCCGCGTAGGCAGCTTAGAAA # Left flank : GGAGCTGGCGGCGCTGGAGCAGACCGGCTGGCTGAAAGGACTGCGCGATTATACCGTCATCACCGAAGCGCTGCCGGTGCCGGCGGGCGTGAAGCACCGCACGGTACGTCGGGTGCAGGTGAAAAGCAGCGCCGAGCGCCTGCGTCGCCGGGCGGTGAACAAAGGCCGGATGACCGTAGATGAGGCAGACGCGCGCATTCCCTATACGGTGGAAAAACGCACCTCGCTGCCGTATCTGCCGCTGCGAAGCCTTTCCAACGGACAAACGTTTCTGCTGTTCGTCGAACACGGCCCGTTGCAGGATAAACCGGTCGCCGGGGTGTTCTCCAGCTACGGATTAAGCGCGGTCGCCACCATCCCTTGGTTTTAACCCTTTTTTTGCGGCCAGCGTTAACGTATTGATTTTTAATACCGCAATCTGGCCGCCAGAAAAAAGGGTTTTTTTCGTCAAAATGACGATTTTTCTTTATTAATCAGGTGATAAGCGAATGTTCGCTACG # Right flank : AAGTAGTATTCCAAAGTTGACCGCAAGCGGAACGTTCACTGCCGCGTAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATCGCAGCCGCATGTGATTGTGGAGGTTCACTGCCGCGTAGGCAGCTTAGAAAAGCACGGCCGCCGCTTCCGCCGCTGCTTCGATGTTCACTGCCGCGTAGGCAGCTTAGAAAAACAAACTCGACCGGGCCATAGTCCATGCGAAGTTCACTGCCGTGTAGGCAGCTTAGAAAGGGACGATGAACATTGCGAGCGGTAGCATCTAGTTCACTGCCGTGTAGGCAGCTTAGAAACCTGACGTGCTGAACCGGATTGGTCGCTACATGTTCACTGCCGCGTAGGCAGCTTAGAAAGCTTAATCAGATAGTCGATATCACGATGCCGAGTTCACTGCCGCATAGGCAGCTT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCGTAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 3939120-3939327 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001982.1 Dickeya dadantii NCPPB 3537 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3939120 28 100.0 32 ............................ GCGATAAGTGCCGGTAGCTATACCAACACCGC 3939180 28 100.0 32 ............................ CGATTGATACGAATAAGTTTGTCAGCCATAGC 3939240 28 100.0 32 ............................ TCGACCAGTTCGCCGGGGTTTTTGAGCTTCGG 3939300 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 4 28 100.0 32 GTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : GGTATAATCAACTGGAAAGTAACGAAAATCAGCCTATCACAGCCCAAACAGGAAAGTGAATGACGCCCGAAATACTTTTCCCGCCGCCATACCCTTTTTTTCAACCGTCTTTTTCGGCATTTAAAAATCAATAAGTTACAGGTAGCCGAGAAAAAAGGGTCTAACGGTGAAAATCGCCAATTGCGGGTCAGAATACAAAGGGTTAGAGTCAACTCGCTACGGTTCACTGCCGAGTAGGCAGCTTAGAAAGCCCACAGCCACAGCCTGTGACGTGCGGCCATGTTCACTGCCGAGTAGGCAGCTTAGAAATATCGCGCATTAAAGGCAAAACTTAATAAAGGGTTCACTGCCGAGTAGGCAGCTTAGAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGCGCGACGCTGGCCGCCGGCCCCTGCTG # Right flank : ATGAACACCCGGCACCTGCTACGCCACTGGAGCGTTCACTGCCGCACAGGCAGTATCCCTCCCCGGCCGGGGAGGGATACATCGGTCAGAACGACGTCCAGTCGTCATTGGTACCGGCGGTGGCGGCGGCACGTTTTTCGGTCACGTTCGGGCGAGCAGAAGGCAAGGCGTGGGATAACGCCGCCGGCTGGCGGACCGGCGACGGCGCGCCGTTGCCGCCCTGCGGCGTCAGGCGGAAGGCGCTGACCGCTTCGGCCAGCAGCGACGCCTGCGATTGCAGCGACAGCGCGGCGGACGCCGACTCTTCCACCAGCGCCGCGTTCTGCTGGGTGGTGGTGTCGATTTGCCCGATCGCAATGTTGATCTGGCTGATGCCGTCGCTCTGCTCATGACTGGCCTGCGAGATCTCGTTGATGATGCTATGCACATCTTTAACGTGACCGGTTAAGCCATCCATGGTGGATTCGGCGGTATCCACCAGTTGCATCCCTTCCTGAATC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [8.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //