Array 1 162895-162011 **** Predicted by CRISPRDetect 2.4 *** >NZ_CTQT01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium str. DT104 strain EWH2 isolate EWH2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 162894 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 162833 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 162772 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 162711 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 162650 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 162589 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 162528 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 162467 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 162406 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 162345 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 162284 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 162223 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 162162 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 162101 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 162040 29 96.6 0 A............................ | A [162013] ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 180519-179027 **** Predicted by CRISPRDetect 2.4 *** >NZ_CTQT01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium str. DT104 strain EWH2 isolate EWH2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 180518 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 180457 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 180396 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 180335 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 180274 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 180213 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 180152 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 180091 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 180030 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 179969 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 179908 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 179847 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 179786 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 179725 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 179664 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 179603 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 179542 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 179481 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 179420 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 179359 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 179298 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 179237 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 179176 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 179115 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 179054 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 25 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //