Array 1 49627-50955 **** Predicted by CRISPRDetect 2.4 *** >NZ_WJRY01000001.1 Listeria monocytogenes strain 26530 NODE_1_length_745504_cov_99.2484, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 49627 29 100.0 37 ............................. CAATGCTTAAACCGAGAGCATCAAATTGTTCCCATGC 49693 29 100.0 36 ............................. ATTACAGTACAAGCAAGGGTTATTGAGTTAAATATT 49758 29 100.0 35 ............................. ATTAATGATAAGAGCGGAAAGAAAACTTTCAAGGG 49822 29 100.0 37 ............................. TCCCCCTTAAGATACAAACTCGATTTGACAGGTGCAG 49888 29 100.0 36 ............................. TCGTTTATGACCTTATGAAAGAGTTAACACCTCGAC ACT [49900] 49956 29 100.0 36 ............................. CTTCCTACTTTTTGACATAAAAAATAAGCCGAGTTG 50021 29 100.0 36 ............................. AAGTTCAAAACCTCCCACACCCGCTATGAATAAATT 50086 29 100.0 37 ............................. TTCGTAATTTTACGATTATACTTTTTAGTCAAATTAC 50152 29 100.0 35 ............................. GTAACAAGTAGTGTTATACCTGCAACAATACCAGT 50216 29 100.0 36 ............................. TGGAAATGGGAAGAAAGAAATGCACTGATTGTAGAG 50281 29 100.0 36 ............................. GTCCACATCGACAATAAAAAACACATTGTATCACTT 50346 29 100.0 36 ............................. CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT 50411 29 100.0 34 ............................. TTTGGATAGGTTGTTTCTGATAAATAGGTTCACG 50474 29 100.0 34 ............................. AGAAAAAAAACATCTTTCCAATTTGTTGTTTTGC 50537 29 100.0 37 ............................. ACAAGTGCTAGAACAGAAGTTATAATTTGAACATTAC 50603 29 100.0 34 ............................. AGAAGCGTTAGCGGCATTGTTCGAAAGTAATTTA 50666 29 100.0 36 ............................. TATAAAATATTGCCCAATGTGCGGAAGGAGTTTGGA 50731 29 100.0 37 ............................. AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG 50797 29 100.0 36 ............................. GTGTAATTCTTAATTCCGTATTGATTCGCTAGTTTT 50862 29 100.0 35 ............................. TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT 50926 29 93.1 0 .......................A....C | C [50949] ========== ====== ====== ====== ============================= ===================================== ================== 21 29 99.7 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : CGTCTTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACTCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTCTCCGCCATTCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGTGTCTGTACTTTCTTATTCGCAAGTAGTTCTTTCTCCACACCAAACGTCTTGGCTGCAAGGTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTCCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 8903-5429 **** Predicted by CRISPRDetect 2.4 *** >NZ_WJRY01000003.1 Listeria monocytogenes strain 26530 NODE_3_length_518808_cov_105.255, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 8902 36 100.0 30 .................................... TCTCGACTTCGTAGCCGTCCATCCACGCGC 8836 36 100.0 30 .................................... TTTCTACATCGGAATACTCGCTTCCTATTT 8770 36 100.0 30 .................................... AGATTTAGTTTGTTGCCCTCGCTTTTGCGG 8704 36 100.0 30 .................................... CTAATTGGGTTTTTGACGGAATGTGTATAA 8638 36 100.0 30 .................................... TACTTTTCTTTTATGTTAGCCAAGAAATAA 8572 36 100.0 31 .................................... CATCCTTTTTTAAATAATAAATTTAATAGAA 8505 36 100.0 30 .................................... AAGCAGAACGTCATACATTCTATAAGTCAA 8439 36 100.0 30 .................................... TGATTGCTGGGACGATGGATTTCGACACTG 8373 36 100.0 30 .................................... AAATTTTTCAACGAAAATGGGTTCGTTTTC 8307 36 100.0 30 .................................... GCAATAGACCAGTTAGGTGTCACAGGTGCG 8241 36 100.0 30 .................................... GATAGTAGTATAATAACTGTGCTAATATGG 8175 36 100.0 30 .................................... ATGGCTCTGGATCGCTTGCAACGATGATTT 8109 36 100.0 30 .................................... CTCTTTGTTCGTATAATCAACAGCGTGACA 8043 36 100.0 30 .................................... TTCGTACCATAGTATACACATGCAGGGGCG 7977 36 100.0 30 .................................... CATATAGATGTTTCCTTTCTACTCGTATAT 7911 36 100.0 30 .................................... AAATATTATTCAATGCTGTAACTGTAAAAG 7845 36 100.0 30 .................................... TACTTTTATTGTCTGCTAAGAATACTACTA 7779 36 100.0 30 .................................... ATTGTACAAATTCCAAGTAACTCATCATTA 7713 36 100.0 30 .................................... TTTTTCACGTTTGTACTGTCTCTCCTCGTA 7647 36 100.0 30 .................................... TAACTTTAGATACTGCTAAAGAATTAGCAA 7581 36 100.0 30 .................................... TGTCTGAATGTAGTTAATATCTTCAACTTG 7515 36 100.0 30 .................................... CTTCAGTTTCACCTGTGAATACGCCGTTTA 7449 36 100.0 30 .................................... GCGCTTCAGTTTCAGCATTGGTCTTCTTAG 7383 36 100.0 31 .................................... TCTCTTGCATTTGGTTCTGAATAATCTCGTA 7316 36 100.0 30 .................................... AGAGCAATGTAGTCATTCAGCCAATGCCCT 7250 36 100.0 30 .................................... ATATGGGGGCTTATTGTATGGCTAATATAC 7184 36 100.0 30 .................................... ACGGGGCATTTAATGTTGGCAAGCGCAATT 7118 36 100.0 30 .................................... TCCTCAGATAAGGTTTAGTACGCAAGACTC 7052 36 100.0 30 .................................... TCCACTTCGACGCTGGACGGGCTCTCCTCA 6986 36 100.0 30 .................................... CAATGCTTGGGGCTATGATGGCATGGATAA 6920 36 100.0 30 .................................... CTCTTTTCGATATTCCGGAAGAGGTACTCC 6854 36 100.0 30 .................................... CTTTTGTGTCTTCGGTAGCTTTGTCCATTA 6788 36 100.0 30 .................................... CCAGAGTCGCTTTTTCTTCCGGCCAGTCTG 6722 36 100.0 30 .................................... GTGTGTTATCTATTTGTAGCGTGGGTGTAT 6656 36 100.0 30 .................................... GTGTGTTATCTATTTGTAGCGTGGGTGTAT 6590 36 100.0 30 .................................... ATATACAATGTCTAAGCTTAATCTTTCGGT 6524 36 100.0 30 .................................... GAAATAATATTGATAATATCGCTCTTGCTA 6458 36 100.0 30 .................................... AGTATTTATTATCTCTATTACTTTTGTATA 6392 36 100.0 30 .................................... CGTATTCAAAAGTATATCCGCTAGCCTCAA 6326 36 100.0 30 .................................... TAGGTTTAGGGAGTAAATTAGCTCCTTTGG 6260 36 100.0 30 .................................... GGTAAAACAAGCATCGGCGAAGCAGTAACA 6194 36 100.0 30 .................................... TCCTAAATCTGAAAACAAAAACTACGAGTT 6128 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 6062 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 5996 36 100.0 30 .................................... AAAGCAATAAATCAGATCATAAAGGAGCCT 5930 36 100.0 30 .................................... CGACGGAAAAATTAGACGACGCTAATGTGC 5864 36 100.0 30 .................................... GGGCAACGATATTTGTAGATAACAGGGAGT 5798 36 100.0 30 .................................... TACGATGTTAAGCGGTGGAGTAGATCAGTA 5732 36 100.0 31 .................................... TATAGTCTGTTTTTTCGTAAGTGAGCAGCGC 5665 36 100.0 30 .................................... TTGGGCAAAATGACCGTAATAAATCCATTC 5599 36 100.0 30 .................................... TTAGCACTTATATAGAAGCCCCGCCCCTAC 5533 36 100.0 30 .................................... AGTGATGGGGAAGAGATTGAACTTATGTTT 5467 36 86.1 0 .............A.....C.....A.A.......G | C,A,T [5432,5435,5440] ========== ====== ====== ====== ==================================== =============================== ================== 53 36 99.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACAGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : ATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATGTAAGTAAAGAGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAGAAATGAAAACCGATATAACTTTTAGCACCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 266-31 **** Predicted by CRISPRDetect 2.4 *** >NZ_WJRY01000375.1 Listeria monocytogenes strain 26530 NODE_1054_length_292_cov_0.812121, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 265 36 100.0 30 .................................... GGTCAACGATATTTGTAGATAACAGGGAGT 199 36 100.0 30 .................................... TACGATGTTAAGCGGTGGAGTAGATCAGTA 133 36 97.2 31 ........T........................... TATAGTCTGTTTTTTCGTAAGTGAGCAGCGC 66 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 4 36 99.3 31 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : CGGAAAAATTAGACGACGCTAATGTG # Right flank : CTTGGGCAAAATGACCGTAATAAATCCATTC # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-25.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //