Array 1 58360-58779 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBCL010000001.1 Clostridium botulinum strain CSI-A-KM45-1 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================= ================== 58360 28 100.0 38 ............................ TTTTATTAAAAGTTTTTGAAATTAAAAGTCCATCTTGA 58426 28 100.0 39 ............................ CAAGGGTATTTAAAAGCAATATAGAAGTAATATTATAGA 58493 28 100.0 36 ............................ ATATGATTTCTTAGTAGATATGCAAACGGGAGATGC 58557 28 100.0 36 ............................ TAATCAAGATTTAACCATTCTTTAGCTTCTCGTAGT 58621 28 92.9 36 .............AG............. TTGGAAAGCTTACTAGATTTCTTACCTATATCGGGT 58685 28 92.9 37 ......A............C........ AAGTTAATTCTTTTGAATTTAATATCATCTGTTACAC 58750 28 89.3 0 ......A......A.............A | TA [58772] ========== ====== ====== ====== ============================ ======================================= ================== 7 28 96.4 37 TGAACATTAACATGAGATGTATTTAAAT # Left flank : TTATAACAATTGCAGGATCAGGAATATTGTATAAAAATTATTTTACTAATATTGATTCAAATAGCTATTTATCAAGCAAAGATGAATCTGAAAGAAGTATTTTCTGTCATGAAGATGATAAAAGCAGTAAAAATACCCACAGTTTTGATTTTAAAAAATTCGATGGCAAGTGGTCTTTAATGGAATTTACATCAAGCAAAGGCAAGCGGTAAATTTGATGTAAGTGTAAATTCGGATAGAAACATAGATATTTCTCATATAGATTTTTTTGATTAATTATATGCACTGATGCTATGAATAAAAACAAAAAAATTCTAAAAGTTTTTCCAACCGCATTTAATTTTAAAACCTATCCTAAGCATTGCAATATAAGGCTTAAGATAGGTTTTGTTTATGTTTTTCTGAAAAATCACAAATGGCTGGAAAAATTTTTTTAATCATTGTAAAATCAAATGCTATATGCTATTCTTAAAATTAAGGAATGGCTAATTTACTATGGA # Right flank : AATGGTAGTTGTAGCTTATGTTATAGCTATTATTTTTCAATATTTAGAGGAATATTTTTACATATGTAGAATATTTGTATATAGTCCCTTTAATTCATTATCAAATCTTTCTTGAATAAAAAGGAGCCTGTGTATGCAGTGGGGGCTCCTTTTTTATATTATTTGAAGGAATTTTTTAACATTTATAGAATATTAAATATAACGGCTTCCCAATAGGTTGATTATAGACCTCCTTGCTTAAGCAAAAAGAACCCCAATAAAAAGGGGTTCTTTTTGTATGGATTTATATATTGGTGCTATGTATTGGTCTATTTTTACTATATCCAGATGTAGAAAAGTTAATCAGTAAGAAATATATAAGATGTAAATTTTTAAATATATTTCTATAATGAGAGTACCTTATTTTTTATTTTTTTGATAAAAATTTTAAGAAAATTAGCAATTTATTAATAAAAATTTAAAATAATTATTTAATTTCATTTTAAAGTTGTATCAGAATG # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:78.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 1248316-1248090 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBCL010000001.1 Clostridium botulinum strain CSI-A-KM45-1 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1248315 30 100.0 37 .............................. GTATCAAGTGTAGGTATACCTACTGGTATGCATTGTC 1248248 30 100.0 34 .............................. CCTTTTTTTAAGTTTACTGTTTCAATATTATCTT 1248184 30 96.7 35 ........A..................... AGTGCTGTTATTATTTCACTTATTTTTGCTGTATT 1248119 30 80.0 0 A.......T......G...G........GC | ========== ====== ====== ====== ============================== ===================================== ================== 4 30 94.2 36 GTTGAACAGTAACATAAGATGTATTTAAAT # Left flank : GATAACTAGTTTAGAAATAAAAAGATTATGTTTTAAAATTAATTTAACAATATAAATTACAACAAAACTTTTTATAGTTAATTCTAGCATATCCAATACCACCCCCTATTTATAAGTGAAAGACTCACCAATATCCTAGGAGGATAAAATATTCAAAACCCCCGTAGCCATCCACTACGGAATTACTATCCTAACTTGGATATTATATCATAATTATCTATACTAAAAACAGAGGAATTAAATGGTAAATAACATTTTAGTTTAGAATACTACGTTTATTTTAGGATGAAAATAACAAATAATTATATAGAATACGCTAATATTTTTTCAACCAACTTTAGCTTACAAACCTATCTTAGCTCTTGAAATATAAGGCTTAAGGTAGGCTTTTCTTACATATTTATAAAATATTATAATCGGTTGGAAAACTTTCTTTAAAATCTTGTAAAACCAATGGGTGTATGCTATTCTTAAAAATAAGGAATGGCTATTTTGCTATG # Right flank : AGAGAACCCAAATCTACGATTTGGTGTGAATCGCTTACTACTTAGAGAGTGGCATAGGGATTTTTATAAAACTAAACTATGCATTGTGATAACTTCTATATAAATTATTAGATAAAGGGGGATTTTATGAAAAATAAAGTTACTAATAATTTAAATTTTGTTGCAGCAATATTGCTTGGAATTGTGGCTATGTTAAATTTTTCTCAGCATAAAACATTGCTGGGAATTACATATATCTGTTCAGCAATATGTTTTTGTACACTTGAATTTTCAAAAAAGAAAAATGCAAATCATAAATAAATTTAGTATTAAAAACCTGTCTATTTTTAGGGCAGGTTTTTAATATTTAAAGGAGATAGATAAAATAGTTTTTTGTAGTCATGTAAATATTGTATATTATTTTATATTTTTGAAGGATTATCCATAATTCTGTAGAAGAATATTTGTGTAGGAAATATATTATAAAAATATGGAGGGAGTATTGTGGATAAATTTCGTAA # Questionable array : NO Score: 5.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAGTAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 3 1249714-1249227 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBCL010000001.1 Clostridium botulinum strain CSI-A-KM45-1 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1249713 30 100.0 36 .............................. GGGATCTTTAATGAATATAAGTCTTAGCAATAAGGC 1249647 30 100.0 35 .............................. ATTAATTTTGTAAAAAAGTAGCTATGCCAACATAT 1249582 30 100.0 36 .............................. TCTTCTCTGGCTAATGCGGATGCTTGTACCTTATCC 1249516 30 100.0 36 .............................. TCAAATAATATTGGATAATTACCGTCACTAAGGCTT 1249450 30 100.0 37 .............................. AATGTTAGAAATTGATTTAGAAAAGGAAGAAAATCAG 1249383 30 100.0 34 .............................. TCAACACTATTTTTTCTTTCTATAGCTATGTCAT 1249319 30 100.0 33 .............................. TAGATTATGATCCAGCACCAATACTTTTATTAG 1249256 30 90.0 0 .......................C.G...A | ========== ====== ====== ====== ============================== ===================================== ================== 8 30 98.8 35 ATTGAACATTAACATGAGATGTATTTAAAT # Left flank : AAAAGCCTACATTCATGTATTTACTTTGTTTTTTGTAGTAAATATTTATGATATGATTGTTTTAGATATATGTATTTTTTGTCACAGTAAAAAAACTAGAATACCTGGTACAGAGGATATGGATAAAGAATATAGGAGTCCATGGCATCATATAAAAGGGGCTGGTATTGGAACTATAATAGGTGCTGTAGTAGCATTATTATCTGGAGGAATGCTTCATTTCATATCAATAATATAGTATTTAAGCAGGGAACCCAGATCTTAGATTTGGTGTGAGCCGCTTACTCCTTGGAGAGTAGGATAAAGAGTTTCATAAATTGAATTTTTCCAGGCGTAACAAATTTTAAAACCTATTCTAGCTATTGGTATATAAGGCTTAGAATAGGTTTGTTTTATGTATTTATTAAAAAACGTAATCACTTGGAAAACTTTCTATAGAACCTTGTAAAATCAATGGCTATATGCTATTCTTAAAAATAAGGAATGGCTATTTTACTATG # Right flank : AAACAAATAACGATGAAAAGATAACAAATAATAATTAAGGTGGTTTTTCATTGACAAGGTTTTTCAACATTTTGAAATTGAAAAACTAACAGCAAATATTATACAGAAAACTATAGAGAATCAATTATAAGCAGTAAAATCTAATTTTATAGTTAGTTTTTTTATAGAATTTTATAGTTAAAAAATTAAACATATAAATATGTGTTTATTTTTTATATAAATTTGATATAATATAAATAAGAAAAGCTTAGTGTTGGAGCACTAAGCAATCCTTAGAACATTTATTTTGTTTTAGGGCTATTGGATGAATTTAATAATTAAATTTGAGAGATTAAAGCACTATTCTTGGTCGGATGGGTGCTTTTTCTCTTTGCCATTAAGTTCTATGTGAATACCAAGAAATTTAATCTTGATAACTAGTTTAGAAATAAAAAGATTATGTTTTAAAATTAATTTAACAATATAAATTACAACAAAACTTTTTATAGTTAATTCTAGCA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 4 1263082-1262922 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBCL010000001.1 Clostridium botulinum strain CSI-A-KM45-1 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1263081 30 100.0 32 .............................. TGGAAGCATGGAGGGCTAGATTGGACAAGTAC 1263019 30 100.0 38 .............................. CTAATCCCATGTATTTTCCAGAGCTCAACTGGAAGAAT 1262951 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 3 30 100.0 36 GTTGAACATTAACATGAGATGTATTTAAAT # Left flank : AATATTTATGGTGTCAGATACTGTGCGTCCATTATAGTAGTTTTTCCAGGTAAATTAAAAAATAAAAGTAATGTAAACTCAATCATATTAGTGGTTTATATAGGACTTTTTATAGAAATTTCTATTTTATAAAATCATCTGGAAAGCTTTCTGGAAAATTTTAGTATTTAAATGGGGGTGTGCTATTTTAGATTTTAAGGAATATTCATTTTACAGTGGTTGAACCTTAACATAGGATGTATTTAAGCAGGGAACTCAAATTTACAATTTGGTGTGAGTCACTTACTCCTTGGAGAATAAGAGAAGGAGTTTTATAAATTGAATCTTTCCAGGCGTAACAAATTTTAAAACCTATTCTAGCCGTTGATATATAAGGCTTAGGATAGGTTTTGTTTTATATTTATTAAAAAACGTAATCACTTGGAAACCTTTCTATAAAACCTTGCAAAATCAATGGTTGTATGATATTCTTAAAAACAAGGAATGGCTATTTTACTATG # Right flank : ACTATATCTCCTCTTGTAGCGGGAGTTCCTATACCTGTTGAACATTTAAGTTCCTTTTAGGTGCAATTATTTTTGGGTTATTGACTTGTAGTCTAAAGCTACACCATAAGAAGGTTTATTAAACACATGTGGAGGAACAAGTAATAGATACAGCACTTGCTATTGATGCGGTGAATTGTATTACAAATAACGAAGGTTTTATTTAAAACTGTTCATATGGCTGGATTTAAGAAATATAATAGTGTCCTAAGTTGTATTATAATCTAAGTAAATTATAAAAATATATGTTTATATTTATTTTAAGACTATTGTATTAATATGATTCATCCAGATTTAATTGTGAGAAATTTCATTATAAACTTAATAGGGAAGTCTTAGATTTTTTATTGCATGAGATTATACGGAAAATATTAATTTTCACTATAACTTAACAAATGATTGATACAATTTTAAAAAAATCAGGACCTACAATGATAAAGTAGGTCCTGATTTTTATTAAA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //