Array 1 210454-208594 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHOV01000004.1 Salmonella enterica subsp. enterica serovar Muenchen strain CVM N51983 N51983_contig_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 210453 29 100.0 32 ............................. GCTGGCGGTGTACTCATCGCTTTGCACGGTTC 210392 29 100.0 32 ............................. GAACGCACGTCGCACAATACGACGGTTAAAAA 210331 29 100.0 32 ............................. CGCGCCACGGGTAAGACCTGGGAAGAGACGAT 210270 29 100.0 32 ............................. CTCAAGTAAACGTTAGCACCACGAATATAACC 210209 29 100.0 32 ............................. GGCATTGCGTGGTATCGGGTTTGCTAATATTT 210148 29 100.0 32 ............................. GCGCCCGTCGGGGGAAGCAAGGCGGACGGGAC 210087 29 100.0 32 ............................. TAGTCCATAGCCTCAGCCCGGCTTGTCATCCT 210026 29 100.0 32 ............................. ATTACGAGACATTGTGGAAATCCATCTACGGC 209965 29 100.0 32 ............................. AGGCGTGCATCAATTGCTATAAAGCCGTAGTC 209904 29 100.0 32 ............................. ACTGGTTGAGAAGATCCGCCGCAGAATCAGCG 209843 29 100.0 32 ............................. ATCACATCACGCAGATATTATCTCATTACAGC 209782 29 100.0 32 ............................. CGCCTACGCCTGGGAGCTAATCCCCGACAGCA 209721 29 100.0 32 ............................. CCCGTTCCACGGCGAGAAAACCCCGTCCTGCG 209660 29 100.0 32 ............................. CCGTTGACGGCGAGCGCAGACCTCGGAAATAA 209599 29 96.6 32 ............................T TGCCATAGAAGAATCTGACCCTGATAACTGGC 209538 29 100.0 32 ............................. GCGTCCTCGCCAGCGTCAGCCGGGTAATACAA 209477 29 100.0 32 ............................. GCCTGCGTGAAAAACAGGTTCATCAGGATGCC 209416 29 100.0 32 ............................. CTCCTTGAGCAGGGGAAACCCTGCCTTTTCCA 209355 29 100.0 32 ............................. GGCTGAGAAGATCGGCGGGCAAACTGCCTATG 209294 29 100.0 32 ............................. TTTATTCGCCGAAAGAGGGCGACATAGTTATT 209233 29 100.0 32 ............................. AGCCAGGCGTTATCTTCTGGCGTTCTTAGCGG 209172 29 100.0 32 ............................. GTGACAACGGTCCCGGCGCTGGAAAAGGTGAA 209111 29 100.0 32 ............................. CCAGATAGAGGCTTTAACATGAAATCAATTAC 209050 29 100.0 32 ............................. GGGGAGGGTGAATTTAACGAGCTGTATAAAGC 208989 29 100.0 32 ............................. CAAAAATGATTACTATAATCCCATGTTGAACA 208928 29 100.0 32 ............................. CTTCATCTCGCAGTACGTAAACGCCTGCATCA 208867 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 208806 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 208745 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 208684 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 208623 29 96.6 0 A............................ | A [208596] ========== ====== ====== ====== ============================= ================================ ================== 31 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGTGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 227727-226722 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHOV01000004.1 Salmonella enterica subsp. enterica serovar Muenchen strain CVM N51983 N51983_contig_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 227726 29 100.0 32 ............................. GTTGCACGCATTCCAGTGTGGTTTAAAAAACA 227665 29 100.0 32 ............................. AACAACCCGCTAGTATTACAACGACTAAAAGT 227604 29 100.0 32 ............................. CGGGCGTACACCAGAACGGCTATTCAGGCACG 227543 29 100.0 32 ............................. GCGCAGTATCAGGGAACGGCCGTTATTACGGT 227482 29 100.0 32 ............................. GAGCGTTTAAAAATGCTCGATACGCTCCAGCA 227421 29 100.0 32 ............................. ATTCTTGACTGGCTCGATACGCTCGCATCCAT 227360 29 100.0 32 ............................. ATTCTTGACTGGCTCGATACGCTCGCATCCAT 227299 29 96.6 32 ................A............ TCACAGTTGAGTTTTGCCGAATTTTTCAACAC 227238 29 100.0 32 ............................. GCCGGACTCAACGGCGAGAACGTCGGGGACTT 227177 29 100.0 32 ............................. CAGACTGTGGATCTCAATCGGCCCGGGCAACT 227116 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 227055 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 226994 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 226933 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 226872 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 226810 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 226749 28 89.7 0 ............T...........G-... | ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCTATTATGTTGGTGGAATGTAGTGCTGGTAAAAAGTAGTTTATAAACAATTATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //