Array 1 6356-8373 **** Predicted by CRISPRDetect 2.4 *** >NZ_NYOC01000021.1 Listeria monocytogenes strain CDPHFDLB-F15M04208-E044-2 F15M04208-E044-2_Contig_21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 6356 36 100.0 30 .................................... GTATTGACGAATACTACCGTAGAAGTATTC 6422 36 100.0 30 .................................... TCGTGATTTCTTCCTCATGCGCGCTTTTGA 6488 36 100.0 30 .................................... TTATCAGCAATTGAAACTATTAAAAATGAC 6554 36 100.0 30 .................................... CCTAGACCTAGATGCTACTAGAGTGGACGA 6620 36 100.0 30 .................................... TAATGCATCTTTATATTGATTTACCTCACC 6686 36 100.0 31 .................................... TGGAAATGAACGATTGTCGGCATTCACGAAT 6753 36 100.0 30 .................................... AGATATGGGCGAACTACCCGACGACAACAA 6819 36 100.0 30 .................................... GAAGAAGTCACTAGTTGGGTCAAGCAAGGC 6885 36 100.0 30 .................................... TAGTGCCAGTAAATTCAGTTCCTCCAAAGG 6951 36 100.0 30 .................................... TGTAAATGCGTTTAAATCGATGGGAAGCGC 7017 36 100.0 30 .................................... ACACGTGTGGAAGAAGAGGGCTCTGACGCT 7083 36 100.0 30 .................................... GTATGAAACGGTTAAATGGATCTCTATAGC 7149 36 100.0 30 .................................... ACCAAGTCTAAGTGTAGACTGGCGTGCGCA 7215 36 100.0 30 .................................... TTTAATGATTTTCTTTTGCGCGCCGTTGGT 7281 36 100.0 30 .................................... GAATTTTTTTGTAAGATCGACAACTTTTTC 7347 36 100.0 30 .................................... TTGATAATGATAAGGCTGTACGGATTATTC 7413 36 100.0 30 .................................... TAACAGTGTATTTCTATTGCTCGGTGTGTT 7479 36 100.0 30 .................................... TGGAGATAACGAAGAGTAAAGCGAGGCAGC 7545 36 100.0 30 .................................... GCGTTGAACCAGAAGGTGGGAAAGAAACAC 7611 36 100.0 30 .................................... TGGTAATTTAGTATCTATTACGGCTGGGAA 7677 36 100.0 30 .................................... AGTTCATGCAGATGTTCCAACAGACTATGA 7743 36 100.0 30 .................................... AACAGCTCGGTTCACAGCCCAAACAGGCGA 7809 36 100.0 31 .................................... TAGCATCCCTTTGTTGAAAACATAGTCTGAA 7876 36 100.0 30 .................................... TTAAATTTCCCTTCTAACACTATCTATCAA 7942 36 100.0 30 .................................... ACGTGATGGTCCTTGGAAAAGGAGATTACT 8008 36 100.0 30 .................................... AAATAATTTTTTTGATCATGTTGCAACAGC 8074 36 100.0 30 .................................... TGCAATATTGTCTGGATCTTTTTTCTTGTT 8140 36 100.0 30 .................................... AGTTAGATAGATAAACAAACTAAACAAAGG 8206 36 100.0 30 .................................... TAGTTTTTCTTCGTCCTCTAAACGCAAGCT 8272 36 100.0 30 .................................... TGTCTGAATGTAGTTGATATCTTTAACTTG 8338 36 72.2 0 .........A..CA.....C.....A.C.A..C.TA | ========== ====== ====== ====== ==================================== =============================== ================== 31 36 99.1 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAGCTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : AGAGACAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAAACTATCTACATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAAGGACGGAGAAAAGTTTCCTCATCTCTATATATACTAGAGTGGCTTAGACTTCTTAAATCCGAATTTTGAAATGAATGTTGACCAAGATAAAGATATAAATAAATTGTTTCCCTATTCAATTCGTTTCAACTCAACTTGCAAATTTCAAGTTGCTACAAGCAAAGGGGATATACCGTTGAAAGTGGAGGAGCAAAATAATTGTTACGAGACCAAAAGTTTAAAAATTTTATATGATTATATTCTAAATGCGAGTAAAAATGGTGACACGCTTGAACTATATACTGTTTGGACAGCGAGAAAGATTTACCGTTAACGCACAAACCAGAACTGCTTTAACTATCGGAAATCTAGTTTTAAGTGACAGAGAGCTATTAATAATTAAAAGTGAGACA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 32578-33318 **** Predicted by CRISPRDetect 2.4 *** >NZ_NYOC01000007.1 Listeria monocytogenes strain CDPHFDLB-F15M04208-E044-2 F15M04208-E044-2_Contig_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 32578 29 100.0 36 ............................. TCTTTAGTTGTTACTTGTTGGTTAATGAGATCTACC 32643 29 100.0 36 ............................. TGCTCTCTTTTGTGTAAAGCACATCAAGCATGTAGC 32708 29 100.0 35 ............................. GCGATTTTTGTCAAAGGGACAGCGATGGGTTACAA 32772 29 100.0 37 ............................. TTACCACCAAAGTCCCTACACTCAATACCACCAAAGC 32838 29 100.0 35 ............................. CGCTCTGACCTGTTCCTTGTGCAACACTCGTTACA 32902 29 100.0 34 ............................. TTTTCTACTCCTGCTTCTAAAATGTCGTTTATAA 32965 29 100.0 35 ............................. CTAAAACATCCTTCACTGTATCAACTCCTTTCTAT 33029 29 96.6 36 A............................ AAAATAGGAGGAAATAAATTATGACTATCAAATTAA 33094 29 100.0 35 ............................. TTTGTTGAATCAACGGATATAGATTTTACAATTTC 33158 29 96.6 37 ................A............ TTGGTTCCTTTGGAAAACAACAATAACGTGTAGTATT 33224 29 75.9 36 ......T.C.A.C...CA...T....... GCAGAAGCAGCAAAATAACCAAAAGTAATGACTTTC G [33247] 33290 29 79.3 0 ......A..T....AGA......A..... | ========== ====== ====== ====== ============================= ===================================== ================== 12 29 95.7 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : GCGTCCGTGCCACTACTTCAGCTGATATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTGTTATCTGTCGACCTCGAGTAGCGTGAAAAATACCGGGGATCGACAGAAAGTTGTAAGTGGTTGGGGTGGAAGAAGTTTGGCGGTATTTGCTTGGGGGAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGTGG # Right flank : TGAAAACCTGTTATACATAGGATTATCTATTTCCGTTATAATTATTCCTTGCAAATAAATTCCAAAAAACAAACCCCTCATTAATTGGGTTTGTTTTTTTGTGAATAATTATAGTCAAACGAGCAATCTGTTAACAATTTAGCAATAAACGCAATAAAAAGCCGTTTTTTCACTATGGATTGTACTATAAAACATAATCTACCTATGCTAAAATTTAAGGGAAGGTAAGCTGAATAATACATATAAGGAGGACTCTACTATTGAAAAAGATTCTAGTGCCCATATTATTGTTAGCAACAATCTTAGCAAGCTGTTCCTCGCCGAATGAAAAAATAACCAAAGACACTAAAATATCCAAGACTATTACAATAAGAGCAGATTACAAAGTTCCAAAAGATATTAAAGAACTTGAGGATGATAGTGCTAATATTGTTAAAGTAAAATTTCTTCAAAATAAAACGATAGGCAAGGATGGTAGTACTATCAGCGAGATAGAAATT # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //