Array 1 576304-575011 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019935.1 Streptococcus thermophilus strain APC151 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 576303 36 100.0 30 .................................... AGTAATATCAAAAAAGCCCCCTTGATTATC 576237 36 100.0 30 .................................... TTGTGTTCGTTTAGGTGTGTACCATAGAAA 576171 36 100.0 30 .................................... AACGGCCTATGCTTAATAAAACAACTTAAA 576105 36 100.0 30 .................................... GAATGGCTTGTCTATTTTTGGGCTTTTGTG 576039 36 100.0 30 .................................... CGTTAGCAGTTTCAATCCGTAGCCACACCT 575973 36 100.0 30 .................................... CTCAATCTAATAAATGGATTCGGAAAGACC 575907 36 100.0 31 .................................... CTAGAGGTGACCAAGGTGTACCTGGACCTAA 575840 36 100.0 30 .................................... CTTCTTAAAATTGAATAATTCGAAGTACAT 575774 36 100.0 30 .................................... TTCTAAGTCAAAAGAATATGATGCTAGTGG 575708 36 100.0 30 .................................... GGTGGCGCTACACATACACTACGCTACGCT 575642 36 100.0 30 .................................... TTTTGCTAGGATATGTCCGAACGTCGATAC 575576 36 100.0 30 .................................... TAAAACGCCCGTAGCACGATTTTATTGCAT 575510 36 100.0 30 .................................... AAGCTAAGTAAGCTATATTTTGACCGTTAT 575444 36 100.0 30 .................................... CACTAGACCACGCAAACTATAAAATAAAAA 575378 36 100.0 30 .................................... AAGCTAAGTAAGCTATATTTTGACCGTTAT 575312 36 100.0 31 .................................... CTTAGCCTTGAAATGGCACGTAGTGAACTTA 575245 36 100.0 31 .................................... CGGACAGCGATAAATACACTCTATACAGAGA 575178 36 100.0 30 .................................... TAAATAATAAAGTTTTCTACCAAGATAATT 575112 36 100.0 30 .................................... CACACTTGCACAAGTATGTTTCAATCTTAT 575046 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 20 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGAGAATTTTAGTATTCGTCAATAGCTTGTCGTATTTTTCTAAAGATGAAATTTATCAAATCTTGGAATATACAAAGTTATCACAAGCTGATGTATTATTTTTGGAACCTAGACAGATTGAAGGGATTCAACAATTTATTTTAGACAAGGATTATATTTTGATGCCCTATAATAACTAGTAAATTAGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGACTATCTTTTAGTATTTAGTAGTTTCTGTATGAAGTTGAATGGGATAATCATTTTGTTAGAGAGTAGATTATAAGGATTTGATAGAGGAGGAATTAAGTTGCTTGACATATGATTATTAAGAAATAATCTAATATGGTGACAGTCACATCTTGTCTAAAACGTTGATATATAAGGATTTTTAAGGTATAATAAATATAAAATTGGAATTATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGCGATTACGAAATCTGGTAGAAAAGATATCCTACGAG # Right flank : TTTTGTTATCACAATTTTCGGTTGACATCTCTTAGAACTCATCTTATCATAAAGGAGTCTAGTATTGAAATGTGAGAAGGGACATGTTATACGAATATCCAGCTATTTTTCACACGATTGAGGAATCTTGCAGGATTAGTTTTCCCAATTTTGGTCGGATTATTCAGGTAGCTTCTTTATTTAATGTTATGACGAAATCGTCAGTATTTTTGGCTTATATTATTTATTATTATGTGGACCAGGTCTTGCCTGATTTGACGGCAGTAAGTAGTATTCCTAATGAGAAAGAGCTTGTGGTTTTGATTCAGTTAGAACTTGATTGACAGCAAAAAACTCTTGGAGGATAAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAGATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTCCTAAGAAGACTACAGCAGCTAGAATTGAGATAATCGTTGATATGCCAATGAAAGAAGCAGTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 1689194-1691603 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019935.1 Streptococcus thermophilus strain APC151 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1689194 36 100.0 30 .................................... TCTTTCTATAGCATAATTGTTAGTTGTCCT 1689260 36 100.0 30 .................................... GAAAGAATCGGTCTTCTAGATGGATTCCAA 1689326 36 100.0 30 .................................... TAGGAAATTCATACCCTGCAGATATATCAT 1689392 36 100.0 30 .................................... AACGATAAAAAAGAAGAAGCTTTCACGCCT 1689458 36 100.0 30 .................................... TCGATTTTAAGCCGTGTATTTTGCTAGGTA 1689524 36 100.0 30 .................................... GCTTGGAGGCGTCAATGTTCGCAGCTTATC 1689590 36 100.0 30 .................................... ACCTGTCATCTCTGGGAGTTAAATTTCCTT 1689656 36 100.0 30 .................................... ATTAGCACGAGCCTCTGTATACTGTTCTTT 1689722 36 100.0 30 .................................... TTTGGTCTGGTGCGCCTTTTATATTGAATT 1689788 36 100.0 29 .................................... GGTTCCCTATGAGCAAAGGACAACGCTTT 1689853 36 100.0 30 .................................... TCGATTTTAAGCCGTGTATTTTGCTAGGTA 1689919 36 100.0 30 .................................... GCTTGGAGGCGTCAATGTTCGCAGCTTATC 1689985 36 100.0 30 .................................... ACATTGAGTAAGTCAATAGTTTGCGATGGC 1690051 36 100.0 30 .................................... TAGAATAAGTGAATGGGAAACTGACGGAAC 1690117 36 100.0 30 .................................... ACATAGAAGGCTAAGCAATCAAGCAAAAGA 1690183 36 100.0 30 .................................... ACGACATCAAGCTGATTATCTTCTACATAC 1690249 36 100.0 30 .................................... CTGTCTAACATAGTCCCAAACTTTATCATA 1690315 36 100.0 30 .................................... CTAAAAACGGTGTTCTATATCGAGGTCAAC 1690381 36 100.0 30 .................................... TGTTTCCATCCGTGGTGAAATGGTAGAAGT 1690447 36 100.0 30 .................................... TTGAGCATTTACTTACTAATTTCAAACGGT 1690513 36 100.0 30 .................................... AGATGACCTATAATATAATCAAAATCACCT 1690579 36 100.0 30 .................................... TCTATCTTAGGCGGTGGACTGATGACGTTA 1690645 36 100.0 30 .................................... GATAGATATATATATTATATCACAATCCTA 1690711 36 100.0 30 .................................... TTATAGTATATCTAATGTGTTCCCGTTTGT 1690777 36 100.0 30 .................................... TTGAAATTTATAATATGGATGTCGATGATG 1690843 36 100.0 30 .................................... TCTAGAGACCTCTTCGTGTTGTCACAACCT 1690909 36 100.0 29 .................................... GCTCTTTCCTACTCCTGTGTCTCCTATTA 1690974 36 100.0 30 .................................... GTTTATCACTTATTTGATATACACTTATAA 1691040 36 100.0 30 .................................... ATATCGGTGGTGGTGCGTTTGAAACTGACA 1691106 36 100.0 30 .................................... GACCCACGGATACCGCCAAAACAGCACGTG 1691172 36 100.0 30 .................................... GAAGTGATAGACGTTGTTAACTCATCAGCA 1691238 36 100.0 30 .................................... TTTCTGTGTACTCCATCGGCTTTTGAGTGT 1691304 36 100.0 30 .................................... GCTTTGCGAGTAACGCCGGTTGCTTTTCCT 1691370 36 100.0 30 .................................... TTGGCATCAGTGAATTTGATGCCTGGAAGT 1691436 36 100.0 30 .................................... AATTTTGCCCCTTCTTTGCCCCTTGACTAG 1691502 36 100.0 30 .................................... ACCATTAGCAATCATTTGTGCCCATTGAGT 1691568 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== ============================== ================== 37 36 99.8 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : ATTGATGGCTTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGCTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGTTGTTTCATTTTAGTTACCGTATAAGATATTCACAAACATCTGATGAAAAACTTTTACAGAAATTTTTAGAAAGTAAGGATTGACAAGAACAGTTATTGATTTTATAATCACTATGTGGGTATGAAAATCTCAAAAATCATTTGAG # Right flank : TTTGATTCAACATAAAAAGCCAGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAATCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCATGGTCTGTGGATCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTGCCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCTAGCTCCTTGGTCATTTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCCGGCCTTAAGTACTGGGTAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //