Array 1 162917-161013 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDIP01000007.1 Salmonella enterica subsp. enterica serovar Typhimurium strain STM139, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 162916 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 162855 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 162794 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 162733 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 162672 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 162611 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 162550 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 162488 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 162427 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 162366 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 162305 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 162244 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 162183 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 162122 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 162061 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 162000 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 161939 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 161878 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 161817 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 161756 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 161695 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 161633 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 161530 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 161469 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 161408 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 161347 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 161286 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 161225 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 161164 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 161103 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 161042 29 100.0 0 ............................. | A [161015] ========== ====== ====== ====== ============================= ========================================================================== ================== 31 29 99.7 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 180541-179048 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDIP01000007.1 Salmonella enterica subsp. enterica serovar Typhimurium strain STM139, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 180540 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 180479 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 180418 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 180357 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 180296 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 180235 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 180174 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 180113 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 180052 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 179991 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 179930 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 179869 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 179808 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 179747 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 179686 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 179625 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 179563 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 179502 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 179441 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 179380 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 179319 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 179258 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 179197 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 179136 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 179075 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //