Array 1 16480-18585 **** Predicted by CRISPRDetect 2.4 *** >NZ_LS483402.1 Corynebacterium ulcerans strain NCTC13718 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 16480 29 100.0 32 ............................. CGGGTTGATCGATTTGAAAGCTGAACGTGATA 16541 29 100.0 32 ............................. CGCCACCGCCACTTCAATCGCTATAGCAACCT 16602 29 96.6 33 ............................A CCGATAAGTGGGACAGCACGAAGGGTAACCCGC 16664 29 100.0 32 ............................. CGAATTCTTGATCTCATCGACGGACATTTAAC 16725 29 100.0 32 ............................. TTACAGGCCGAGGAGTTATTTTTCATGGCTAA 16786 29 100.0 32 ............................. TGGTGATGCTAAGTGGGTTGAGTCGGGCAGTC 16847 29 100.0 32 ............................. AAAAAGGGCAAAGTTGATCAGGTACGTGTGGG 16908 29 100.0 32 ............................. AGGCTTTGAAGGATTCTGTGGCTGGCGCGATT 16969 29 100.0 32 ............................. CAATCGCAACAGCACCTATACCATCGACTTCA 17030 29 100.0 32 ............................. TCGCGCCTTCAGCTCTTCTATCTCCGCAAGAA 17091 29 100.0 32 ............................. AGAATCCTGGCTCGTGAGCTTATCCTCAAGCT 17152 29 100.0 32 ............................. TCAAGGAGCACCTGAAATGCTAAATCCCTACG 17213 29 100.0 32 ............................. AATCCAAATCAGGGTCGAAAGATGCGAAAGCG 17274 29 100.0 32 ............................. GTTTTCATTTGTACGGTAGGCGGGTACAGATG 17335 29 100.0 33 ............................. AGGATTGGAATCAGATTGCTAATGCGATCCCTG 17397 29 100.0 32 ............................. GGGAGGCCACATCGCGGGCTATGTCTGCGGAT 17458 29 100.0 32 ............................. ATTAAGCGTTTTGAGGGAAGGTGAAAGCGATA 17519 29 100.0 32 ............................. GTGGCGAAAGCGGAGAAGATGTGCGTGTTTTT 17580 29 100.0 32 ............................. GATCACACGATCACCCTTCGCTAGGGAGTTCG 17641 29 100.0 32 ............................. CCACTCCATGAAAACATCCTCCTATCACCAAA 17702 29 100.0 32 ............................. CAATCGGCTGGCCTATAGTGTTCAAAACTTCC 17763 29 100.0 32 ............................. ATGTCTTTATCCTTATGTAGTGGGTGGGTTTT 17824 29 100.0 32 ............................. AGACTCTGGCACGTCGTACCATGCGAGGACCA 17885 29 100.0 32 ............................. GCGCCCAATATCTGCCAAAGCCTCCGATGTGC 17946 29 100.0 32 ............................. GGTGCCAATGGCGGGCTGGTAGCTGTCTACCA 18007 29 100.0 32 ............................. GACTGTGGCGAATTCTCGCAGGAAGGAGCTGG 18068 29 100.0 32 ............................. ATCAACGGTGAGCTGCGAAATAAGCTCGGCGC 18129 29 96.6 32 ............................T TGATAGTGATTAGCTGGTCAATCAGTGTTTCT 18190 29 96.6 32 ......................C...... CTTGGACGTGTCCCGATCGTCATGATGATTAA 18251 29 100.0 32 ............................. TGTTGAATCTGGCATCGACGAAGACGGAAAGC 18312 29 100.0 32 ............................. CAGCCGATCTCCTACCCACTCTGTGGTGCTTG 18373 29 100.0 32 ............................. CTACAAACTTTTCTGCAAACGCCACCTCCTCA 18434 29 100.0 32 ............................. ATCATTGCCCAGCTCACGAGCACGCTCGGCGG 18495 29 96.6 32 ............C................ GATACGCTTAGACATAACACCGGCGGCATCAG 18556 29 82.8 0 ....................A...AGC.T | A [18575] ========== ====== ====== ====== ============================= ================================= ================== 35 29 99.1 32 CTTTTCTCCGCGTATGCGGAGGTAGTTCC # Left flank : GAACACCGCCAGCCCGAGAAACCCCCGAAACTGCGACTGCTCAACATCAAGGATCTGCACGCCATTAGCAGCTAACACTCGGAAAGCTGCTGCCGACACTCCCTGTCGATCCTGGCCTGAAATAGTAATAACAGCCGGGGTCAGCTCTGGGCGAAGGCTAACAGTTACTTGAGGCTGGTCCAGTTCAATCACCGATCTATTGTCGCACGAAGCCTTTCAAATCCTCCCAGTGCTCCCCTATTTAGGAATGACGGGCTCCGCATCAACGAATGCGCACTTGCGCTTCATCCTATGGGGCAAATTATCTTATCTTTTGATTTTGCGATTTTATGTCTTCTCCTGGATATTGCGAGGGTGGTTAGTAGATCTTCCCGCTTTTGTCATGGTCTAATAAGGAAGGCTAGTTTTCGCACCGATTGTATGGAGTTAATGTGCTGATTCCAGACGCAGTTTGGACTGTTTTTGATTCCTTTGGTGATTAAACACGCAGGTAAGTTAGT # Right flank : TACAAAAACCTATCATCAGCCTTGATGAACTTTTTAGACGTCGAAGACCACAGAAGAAAACAACAAGTTGATCCGGTTTTCCAGCCACTGGCAAGACCTCAGGAGTAATTCACCACGTTGCTATCGCGACAGCAATCAAGAGGAAGAGCGAAGACATGAATACGTACCAGAAAATAAAGGAAAAGACAGGAGGAAAAATCTATCTCGGAGTAGGACTACAACCAGGCAATCAAGACGAAATAGCTATCGAAGCCTGCTACATAGAAGCACTTATTGACTATGGCTATCTCGATGTAGAACTAAAGAAAGAATTTCTAAAATTATGGCTCACTGATGATATGTACGATGATCTGAGCGATCTTGACTCAATAGAACTGAAAACATATCGTAACCTACTAAAATATGCAGGCATGCAGCCTCGTGTAGATACGTCTGTCTTCCGCCCTGAGCCCGCATAAAACTACATCGTTTAATCAATACATCAGTAACAAGTTTTCTAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCTCCGCGTATGCGGAGGTAGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 585781-587275 **** Predicted by CRISPRDetect 2.4 *** >NZ_LS483402.1 Corynebacterium ulcerans strain NCTC13718 chromosome 1, complete sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 585781 29 100.0 32 ............................. GTTCTGGACAACTCTCTTCTTTGTCTTTATAG 585842 29 100.0 32 ............................. TCTCCGCATCACGAAGATTGTGATTAGCCTTC 585903 29 100.0 32 ............................. TTGAGTGCTGCGCGGAAGTTTCTGTCCACAAG 585964 29 100.0 32 ............................. GCTTATCAGCCACACGCATACCAACAAGGGCT 586025 29 100.0 32 ............................. GCTTATCAGCCACACGCATACCAACAAGGGCT 586086 29 100.0 33 ............................. CGTGGGCCAAACACAAGGCCTGATTGATAAAGG 586148 29 100.0 32 ............................. TGGAACCACCCAAATCTGCGGCCAAAACAATC 586209 29 100.0 32 ............................. CGCCCCTACCGGCGCGACCCGCAAGGACGCCG 586270 29 100.0 32 ............................. GGAAACCGCCCGTGGCGTTTAATGAGGAGCCC 586331 29 100.0 32 ............................. GCTCCCTCCGGCGATCAAGATCAATGCGAACA 586392 29 100.0 33 ............................. CCCACCCACCGCGATTAAGCCACGTGGTGGGAT 586454 29 100.0 32 ............................. ATGAAGACGCCGTGGAGTACCCAGAAAACACG 586515 29 100.0 32 ............................. CAGCTTCCCCTAAAGGAGAAAATTCTATGTAT 586576 29 100.0 32 ............................. CGTCACCGACTCCGCATTATTCGCCGCAGCCT 586637 29 100.0 32 ............................. TAGGCCCCAACGCCTTGCGAAGCGCGCTAGGG 586698 29 100.0 32 ............................. CCAATCATGGCACGTGACCAGCGCTTCTACGG 586759 29 100.0 32 ............................. CAATTGATCCAATGTGTCCTCGATGCTCATTG 586820 29 100.0 32 ............................. ATCTTAGGGCGGGGTGCTCTAAAATAAAAAAT 586881 29 100.0 32 ............................. TTAAGATTCGATCACAATTTCTAACCACATGC 586942 29 100.0 32 ............................. GGCTTTGGCAGGCAAAGCGCCGGTTTCGCATC 587003 29 100.0 32 ............................. TCGGGAAGCTCTTTCACCGTGGCGATGATGTT 587064 29 100.0 32 ............................. GCCAAAAACCCGGTAAAACCACTCAAATCTGC 587125 29 100.0 32 ............................. GGTAGGGAATTCACCCTGAAAGAAGAAGATAG 587186 29 100.0 32 ............................. CGGGCAAAAACATGAGCTCCGAAAGCATATCT 587247 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 25 29 100.0 32 GGAACTACCTCCGCATACGCGGAGAAAAG # Left flank : ATTCGCTTTCACTTTTGAATTTTCAAATAACCTGCACTCCCCCAATATGCGAGGGGGTGCGTAGTGCCCGGCGTGGGAATCGAACCCACGGGAAACCATTCGGGCTTTTAATTTTTAAAAGATCGTGTATAGTAGGAATTGGTTTTGGCTAAGGCCCCGGTTGTGGTGACTGGGGTCTTTTCTTTTGCCCATTTCCCGTCAGTTGTTAAAGAAGCTCGTCCGCGGATTTCACAACACCATGATTGACCAGCGTTTTTATCGCCGCAAAAACTTCGTTGATCTTGGTAGTCTCCACGGTGGTGTTATCACCTTCAGGCCACACCAGAGGGGCACTACGCTGCACAATCGCCTTATACCCAAAGGATTCAAGAAGATCAGCGCGGGCCTTAGCCCCAGAGCGTGATTGATAAATCTTCGTAGTGGAAGGCTCAATAAAAGCATTAGTATTGAACCGATCAATATAATCCTGCATCGGTATCCAGCCTTTAGGGACTACGCTT # Right flank : GACTAAATAAACTGCGCGTTTACTCACTCTCCGGGCAAAAATCCTCCAAAACTTCGTCTGGAATAATTGCATCGGCTTCATCCAAGGGGTCAGCAAAACGCACGTCTTCTATTAGACCACGAGCAGAGAGGAAAAGGCCATCAAGATCAACGACGGGGCGCCGTTGTTTTCCTGTTGTGCGGATTCTGAACCCTTGCTCAGCATCATATTGTGGGTGAATCAGAGTAAGAGATCCTGCTAGGTCTACGGATTGGCATTTTTCCCAAAGGTTTTCCATGACAGCTCTGGATAGAACTCCTACATAAAGGCCTGCGTCTACTTCGGAAAGGAAGCGACTGAGGTAGCCGTTGAGGTGGTTCGGAAGGTTATGCCCTTGGATGACCGCAAACATTTATTTACCACCGTATTGTGTGTGCCCTGGGACTTCGTGGTTTCTTCCGCCGATGAGACGGTCGTCGGTACGCTCGGGAAGATGTGGAGTGAGGATCTCCATCATAATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGAACTACCTCCGCATACGCGGAGAAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.20,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 3 662021-662860 **** Predicted by CRISPRDetect 2.4 *** >NZ_LS483402.1 Corynebacterium ulcerans strain NCTC13718 chromosome 1, complete sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 662021 36 97.2 37 ....G............................... CAAAGAACTGAACCGCCACATTCGCGAAGCAGCCGGA 662094 36 100.0 35 .................................... ACTTGGCGGAAGAGTTAGGCATCTCAGAGAGTTCG 662165 36 100.0 38 .................................... GCCCTCGCCCGATCTGTCGCGCCGGGCATCACATGGGC 662239 36 100.0 37 .................................... ATTACCATTGCCCCACAATTCCGCATGCAAAAGAGCC 662312 36 100.0 35 .................................... GGTGTGAAAGCTGCTGGTGCTTGTGGGGTTTCTGG 662383 36 100.0 36 .................................... CAGCACCTGCACCAACAAACTGTGGCGATGCACAGA 662455 36 100.0 40 .................................... TTCTGTCATTAAGGACATCATTTTGGGGCAGTGGTGGCTT 662531 36 100.0 40 .................................... CGCCTCAATCTGAGCAGCCGCTGCCAGCTGGAGCGTGCCC 662607 36 100.0 39 .................................... TTCACGTGGCGCTGTGTATGGCTCTAAAGCCGGTGCAAT 662682 36 100.0 35 .................................... CCTTACCGCACGGATAATGAAAACCGCTATAACCG 662753 36 100.0 36 .................................... GGTCTGGGTATCATCGCCACTACAGCCAGTAATAAA 662825 36 97.2 0 .....................T.............. | ========== ====== ====== ====== ==================================== ======================================== ================== 12 36 99.5 37 ACCTCAATGAAAGGCTGCGACCGAAGCCGCAGCGAC # Left flank : GCGCTTTTTCTCCGTAGACCTTTTGTTTATATCCCTAGGTGTATTAGGAATCCTTATACTCAAGTTTTCTGGTGATACTGCTAGCGTTGGGCTGGGATGGGTTTCGCTGTTTCTTTTAGGACTAGGTATAAGTGGTGTTTGTTGCTTAACTCGGAGAATTTTAGCCAATATCTTAACGAAGACTACATGATCGTAAACATGTAAAAACTTCGATAGGTAATAGCAATACGGGCAACGTCCTGCGGAGTTCCCAGAAACTGATTGCCTTACCCTCGTAATGTTGACAGTGCTTCTATCGACTGGATATGGATTCTCTACGCAGGAACCATCGCAGTTTTTGGAAGAGGTATGACCTTCCTGACTCTTCTATTTATGGCGTTATTTTGGATTGAAGAAGACAGGCTTCTGACCTGTCGCGAGATTATGTCAGAGACTAGACCATCAGAGGCCACGGTAAAACGGCATCTTCGGGGGCTAGTTCAATACCGCCGAGAGGTTTT # Right flank : CCGGGCCAAGCGGCTGGTGTACCTCAACAAAGGCACCGGTCGCCATATTTTTGCAAGATCTTAGCTAGCTTATTTCGACGTCTATCGTGGGCAATATCGTAGGCGATAATCGTACGACGAACATCATCCCGCCTCATCGTATTTTCACTCCTTTGTATCGAAGCTGGGTTCCGTCTAATACTCCGAGCATCATCCTGGCTTGAACTTCAATTGCGCGCCGCCAGGAAACGCTGTACCCAAATGTGGGATGTTTGAACTGGGTTTGGATCCTTCGCTCAAAGGCTTTGACTATTTTCTTTCTTCCGTCTGTGGTGAGCGCTTGCCCTTTGTCGCGGATAAAGAAGTCTCGGGAAGAAATCTCGCGTCGGTTGATCAACGTTAGAACAACCGAATCAGCTACCACTGGTCGGAACTCCTCCATCAGGTCGAGAGCAGCTGCTGGTTTGTTTCGATTACTACTGTGTAGAAAACCGGCATGAGGATCTAACCCACAAGCAATG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCTCAATGAAAGGCTGCGACCGAAGCCGCAGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.20,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA //