Array 1 8207-10772 **** Predicted by CRISPRDetect 2.4 *** >NZ_VOAX01000008.1 Campylobacter hyointestinalis strain 2010D-7793 NODE_9_length_64123_cov_61.6204_ID_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 8207 30 100.0 36 .............................. TCCAAGCTGTAGCGTTTTTATCTTTTGCAGGTCGCA 8273 30 100.0 35 .............................. GGTCTAGCTTGGCATTACAAAACTTATTCTAAAAA 8338 30 100.0 34 .............................. TTTATAAAAAATAAAAATCCTTATATATCAGAGC 8402 30 100.0 36 .............................. TACAGGCGTTGGGGCTGGAGTGTATGACTTTTTAAG 8468 30 100.0 34 .............................. GGCTGACATTTTATACCGTAAATACCGACGTTAT 8532 30 100.0 33 .............................. GGATATCGAAAAGCTTTTTTCAAATGACCGCTA 8595 30 100.0 34 .............................. GATTTACAAACAGAATATGAGCGGTAAGTAGATA 8659 30 100.0 36 .............................. GTGTCATTTGCTTATTTATCGTCTGATGCTGATAGA 8725 30 100.0 34 .............................. GCGGATTATATAACGGTCAGTCCTAAAAACGAGA 8789 30 100.0 34 .............................. AGCACTGTCTAAGCCGTGCATTTTAGATTTTAGG 8853 30 100.0 35 .............................. TTACGATTTCGAGGACGCGCTAAAAATGCAAGAGA 8918 30 100.0 35 .............................. AAAGAGATTAGTTTTAAAACTTCGATTTTTTCAAA 8983 30 100.0 34 .............................. CAGTAGATTTACTTCAAGCCTTACTATGGCAATA 9047 30 100.0 33 .............................. GCTTTGATATTGTTTTGCAATATGAGAGAAAAA 9110 30 100.0 34 .............................. GGTGCTCCAACGTTAGGCGTTGTAAAAGTCGCGG 9174 30 100.0 37 .............................. GGGAGCTTGGCGTAGGGGCTGGGGATAGCTCTACAAC 9241 30 100.0 33 .............................. TTTTCGTTGTTTTGAGTATTTTGAGCTTGACTA 9304 30 100.0 37 .............................. GGAAACAATGCTTATATGTATTGTGCGCCGACTACGC 9371 30 100.0 34 .............................. ATAGCCTCGTCGTCTCTTTGCACCTCTACTTCGA 9435 30 100.0 34 .............................. CATTTCATAGTCTTTTTTTACATTTTCCCAAAAA 9499 30 100.0 36 .............................. CCTTACCGGCTATTATCAAAATGGGGATAGCAATGA 9565 30 100.0 37 .............................. GCAGGGCGTGGCGGTTCGCTTACGGAAAAAGAGATAT 9632 30 100.0 35 .............................. CATATCCTACCCTTTTTTTTTGGTATATTTTGGCA 9697 30 100.0 37 .............................. TTCCATATCCTACCCTTTTTTTTGGTATATTTTGGCA 9764 30 100.0 39 .............................. TTAAAATTTACTTTTCAAGCCCTACACAAAAATCAAAAC 9833 30 100.0 35 .............................. AAAATGAATTCACGCTGTCAAGGTCTGTGAATTCA 9898 30 100.0 36 .............................. GATATGATTTTTCTCTTTTTTCGCTTTTATATTTTT 9964 30 100.0 37 .............................. GTGAATGTAAGGCGAATAAAATAGCCGAAAGTATTTT 10031 30 100.0 34 .............................. ACATTTTTAGCCTTTTCTTTTTCTTTTTGCTCTT 10095 30 100.0 36 .............................. CTACAATGCCGAAGCTGAAAGACTTAGGGCAATATT 10161 30 100.0 34 .............................. TCAAAGGATATCCGAAAAAAAGCGATTTCATTGA 10225 30 100.0 34 .............................. AGAACTCCAGACCCTGAATTTATCGAAATAGTGC 10289 30 100.0 37 .............................. CGTTAAAAAGGCAAGTTAATACGATAGAGTATTTTTA 10356 30 100.0 36 .............................. GTTTTGAATTCTTTAAGTTCTCCATTCTCAACTTTA 10422 30 100.0 36 .............................. ACCTATTGATTTTCACACGTTCAATAAACAAAGAAA 10488 30 100.0 34 .............................. AACCGCTTTATGCACGGCGTTGTTTTACGAGAGA 10552 30 100.0 34 .............................. AACGTATTTAGCTCTTTTGCCTTTTACGCCCTTA 10616 30 100.0 35 .............................. GCTCCATTCTATCGTACTCGTCTGCCAATCTGTCA 10681 30 100.0 33 .............................. TTTAAGGCTCCCGTTGCCGGTCCACTAAAAATA 10744 29 73.3 0 ............T.T.TA..TC.C..-... | ========== ====== ====== ====== ============================== ======================================= ================== 40 30 99.3 35 GTTTCAAATCCTAAAAGGATAAATTTATAC # Left flank : GCTATTGGCTCAAGTATAGTTTTATAAATGCTTTCCATATGGTTATTATAATATAAAAAAGTAAGCTCCAAATCCTAAAAAAGGTGAATTTTATACCATTTTGGGTTTAATGAGATTTTATCAATGGATTTAAATGAATTTATAGATTATTTTGAGATAGCAAAAAAGGATAAATGAGGCTTAAAGCTTGATATTTTTATATCTTGTATCAGTTTTGCCAGTGTAAGGCTCACAGCAGCTAAAATCAAAATGACAATAAAATTTTATTAAAGCAAAAGCCAAAACCATAATAATAAAACTAAACATTTATAAGCCTTTTTTAAAAATAATATCATAAAAGGATTAAATATGTCAAATGCTACTTTAACCTTTGGAGTGGATTTAAGTGAGTTTAATAGTGCTTTTAATAAAATTAACAAAACAGCAACCACTCTAAGCGATACCCTAGATAAAAACATAAAAACAGCACTAACAGCGATAAAAAATGCAAATCACAAAAA # Right flank : CGAATTACATCTATTATTAAAACTTAATTTAATGTTTATTTGTAATTCGTTAATATCCGTTTCCCCCGTGCAAATCCTTAGTTTTTTAAAAACTGTCTTTTAGTTTGGGGTAACGGATAATAAGGAATGATTAAAAAACTTAGTCTATAAAAAGACTGTATATAAGGGTATTCCTTATCCGTTTTTAAAATTCATTTTAAAAAGTTGTAAAAAATGGTATATATAGGAATTGATATCTCTAAGAGTACCTTAGATATTTGTATTTTAAAATCTTTAGAGAATAAAGAGTTTCATAAAATAGATAATGATATATTCTCTATAACTTCATTTTTTAATGATATCAGCCCTTTAAATTGTGTTATCTCTTTTGAGAGTACTTCTACTTATTCTTATAATTTGGCTAAGTTTTTAACTTTAAATCGTTATAAATATTCTGAATTAAATCCAAATAAAATAAGTCATTTTTTAAAATATTTATCTGATAAAAAAACAGATATACA # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAAATCCTAAAAGGATAAATTTATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 21480-21963 **** Predicted by CRISPRDetect 2.4 *** >NZ_VOAX01000008.1 Campylobacter hyointestinalis strain 2010D-7793 NODE_9_length_64123_cov_61.6204_ID_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 21480 30 83.3 34 A.C.T...AA.................... CATAAATATTTCACGACATTTCCCTCAGGGAAAT 21544 30 100.0 35 .............................. TCAAGCCAAAGAACAATAAAAACTCTTAGAGAAAA 21609 30 100.0 35 .............................. CCGCTTATATTTGTCATATCTATCCTTTATCAAAT 21674 30 100.0 33 .............................. TTTTCGTAAAAGCTCGACCGGTAGAGGCTAGTA 21737 30 100.0 36 .............................. ATTTTCAATACCAACGCTTGCCAAGCCGTTGATTAT 21803 30 100.0 35 .............................. CCAAGCAGTAGCATTTTTATCCCTTGCAGGTCGCA 21868 30 100.0 36 .............................. CGTTCAGGCTTGATAGTAGAATACGTGCTTGACTGG 21934 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 8 30 97.9 35 GTTTCAAATCCTAAAAGGATAAATTTATAC # Left flank : GGTACTTATGAAATTTATCAAGCAAAAGATATGATTGATAAAGGAATAACAAATGGTGTTAATGTGGTTACTGTCACTGGGAAGAATGAACAAGGGTATAAGCATACCTTTACATTTTTTGCAAGAGCAAATTGGACTGAGGAAGAGATTAAAGTAGCTCTTAAGAATAAGACTTTCAACAATGTTAAATTTGCTGAAGTTTTCATTATAGGCTTTAAGAGTTATCTTCCTGCTGGTGCTTCAGTTCCTGGTGCTTAATGTATATTTTAAATTATATCGAGCCACTTATTACAGTATTAGTCGTTGTACTAACTGCTTTAAATTGGCTCATTAATCAAAAATTACAGATTTTAAACCAAAGAGTTACAAGATTAGAAGAGTTTGAAAAGACAAGTCAAGACGCTTTCCGCCTTTTAAGAGAAATAAAAGGTAAGATAGATATGCTTTTAAAAAATTTTCCATAATTTTTTAAAAAAAAATCATAAAAAATCTTGACTTTT # Right flank : CAGCAACAAAAACAGCTAAATTTAGTACTTTGTACCAAGTTTTACTATATTTATTTTACTAAAAAATGGCTTAATATAGTATTTATAAAATCATCAAATAAAGCATTTAAGCTATTTTATAAATCTTAAATATAGCTTTATCAAGTTATTTAAAGCAATTTTTTCTTAAGTATTTAGGCAAAGGTTGATCCATAAATAAATCTAACTTAACCATATTAAATCAAAATAAAAATAGCTATAAGGCAAATTTTAAACTCGCTAAACACTTGTAAATTATTTTATTTTTTCGTAATCTATCAAGCCGATTATACCGTTTTCTATTTTTTTATGACAAGCCACGCAGTTTGCTTTGGATTTTACATCTTTTCTTAAAAATACTTTTTCATCTATCTTTCTATGCTTTTTTATCCAGTATTCATTTTGAGTTATGGCTATATTTTGGTCGTTTTTTGCATATTTAAGTATGTTAAATGCAGTTTTATCACCCCTTGTCTGAGCAG # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAAATCCTAAAAGGATAAATTTATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [86.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA //