Array 1 47581-46157 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQWM010000002.1 Streptococcus thermophilus strain CF5_14 NODE_2_length_123152_cov_174.873604, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 47580 36 100.0 31 .................................... TTACACGCCTAAAAAACCATCTGTTGTTAAA 47513 36 100.0 30 .................................... GCGCCAATTGTCATACAGTATTTGAAGTTT 47447 36 100.0 30 .................................... AAACAATCAGAATTATTAGAGCTTATGGCA 47381 36 100.0 30 .................................... AAAATCAATGGAAAAAGATTGTGGAATCAA 47315 36 100.0 30 .................................... TGACATCGGTAAAGAGTGGAAGAAAGGCTG 47249 36 100.0 29 .................................... ATGATGATGAAGTATCGTCATCTACTAAC 47184 36 100.0 30 .................................... CTTCACCTCAAATCTTAGAGCTGGACTAAA 47118 36 100.0 30 .................................... ATGTCTGAAAAATAACCGACCATCATTACT 47052 36 100.0 30 .................................... GAAGCTCATCATGTTAAGGCTAAAACCTAT 46986 36 100.0 30 .................................... TAGTCTAAATAGATTTCTTGCACCATTGTA 46920 36 100.0 30 .................................... ATTCGTGAAAAAATATCGTGAAATAGGCAA 46854 36 100.0 30 .................................... TCTAGGCTCATCTAAAGATAAATCAGTAGC 46788 36 100.0 31 .................................... TAAAAACATGGGGCGGCGGTAATAGTGTAAG 46721 36 100.0 30 .................................... ACAACCAGCAAAGAGAGCGCCGACAACATT 46655 36 100.0 30 .................................... TATAACACAGGTTTAGAGGATGTTATACTT 46589 36 100.0 31 .................................... CTAGAAGCTCAAGCGGTAAAAGTTGATGGCG 46522 36 100.0 30 .................................... CTTTGAGGGCAAGCCCTCGCCGTTCCATTT 46456 36 100.0 30 .................................... AACTACCAAGCAAATCAGCAATCAATAAGT 46390 36 100.0 30 .................................... CCATAAGTGACAATCAGCGTAGGGAATACG 46324 36 100.0 30 .................................... ATCAGTGCGGTATATTTACCCTAGACGCTA 46258 36 100.0 30 .................................... AACAGTTACTATTAATCACGATTCCAACGG 46192 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== =============================== ================== 22 36 99.7 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : ATTGATGGCTTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAGTATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGCTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGTTGTTTCATTTTAGTTACCGTATAAGATATTTACAAAAATCTGATGAAAAACTTTTACAGAAATTTTTAGAAAGTAAGGATTGACAAGAACAGTTATTGATTTTATAATCACTATGTGGGTATGAAAATCTCAAAAATCATTTGAG # Right flank : TTGATTCAACATAAAAAGCCGGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAACCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCTCGGTCTGTGGGTCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTACCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCTAGCTCCTTGGTCATCTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCTGGCTTCAAATACTGGATAGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 68342-69239 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQWM010000004.1 Streptococcus thermophilus strain CF5_14 NODE_4_length_117939_cov_179.104552, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 68342 36 97.2 31 ............................A....... TGATGTCGTGGGGTACTGACATGTCACAATC 68409 36 97.2 30 ......................G............. CTACCGCTTCAAAGATAAAGCGAAAGACGC 68475 36 100.0 30 .................................... AAGCCGTGTCAGGAAGATTGCTGACCGTTT 68541 36 97.2 30 .......................G............ CTGCATATCTAGATTCTTTCTCAACTGTCA 68607 36 100.0 31 .................................... TAAGTCCTTCGTTAGTTCTTTTTGCGTATGA 68674 36 100.0 30 .................................... GGTGAAAAAGGTTCACTGTACGAGTACTTA 68740 36 100.0 30 .................................... TCAATGAGTGGTATCCAAGACGAAAACTTA 68806 36 100.0 30 .................................... CCTTGTCGTGGCTCTCCATACGCCCATATA 68872 36 97.2 30 .......................G............ TGTTTGGGAAACCGCAGTAGCCATGATTAA 68938 36 100.0 32 .................................... ACAGAGTACAATATTGTCCTCATTGGAGACAC 69006 36 100.0 30 .................................... CTCGTATTCGTTAGTTGCTTTTGTCATAAA 69072 36 100.0 30 .................................... AGAACTTTATCAAGATAAAACTACTTTAAA 69138 36 100.0 30 .................................... ATAGTATTAATTTCATTGAAAAATAATTGT 69204 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================ ================== 14 36 99.2 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGAGAATTTTAGTATTCGTCAATAGCTTGTCGTATTTTTCTAAAGATGAAATTTATCAAATCTTGGAATATACAAAGTTATCACAAGCTGATGTATTATTTTTGGAACCTAGACAGATTGAAGGGATTCAACAATTTATTTTAGACAAGGATTATATTTTGATGCCCTATAATAACTAGTAAATTGGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGACTATCTTTTAGTATTTAGTAGTTTCTGTATGAAGTTGAATGGGATAATCATTTTGTTAGAGAGTAGATTATAAGGATTTGATAGGGGAGGAATTAAGTTGCTTGACATATGATTATTAAGAAATAATCTAATATGGTGACAGTCACATCTTGTCTAAAACGTTGATATATAAGGATTTTTAAGGTATAATAAATATAAAAATGGAATTATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGCGATTACGAAATCTGGTAGAAAAGATATCCTACGAG # Right flank : CTTTTGTTATCACAATTTTCGGTTGACATCTCTTAGAACTCATCTTATCATAAAGGAGTCTAGTATTGAAATGTGAGAAGGGACATGTTATACGAATATCCAGCTATTTTTCACACGATTGAGGAATCTTGCAGGATTAGTTTTCCCAATTTTGGTCGGATTATTCAGGTAGCTTCTTTATTTAATGTTATGACGAAATCGTCAGTATTTTTGGCTTATATTATTTATTATTATGTGGACCAGGTCTTGCCTGATTTGACGGCAGTAAGTAGTATTCCTAATGAGAAAGAGCTTGTGGTTTTGATTCAGTTAGAACTTGATTGACAGCAAAAAACTCTTGGAGGATAAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAGATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTCCTAAGAAGACTACAGCAGCTAGAATTGAGATAATCGTTGATATGCCAATGAAAGAAGCAGTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 22867-23119 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQWM010000005.1 Streptococcus thermophilus strain CF5_14 NODE_5_length_104361_cov_175.278450, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================== ================== 22867 30 100.0 42 .............................. GGAAACGCTTTCTAGCTCGCTATAATTACCCATTCCTAGAAA 22939 30 100.0 46 .............................. GGAAACTCAAAATATGTTATTACCTTGTATTTCATAATTCAATTAA 23015 30 96.7 45 ........................A..... GGAAACCCACTTGCTGTGTACATCCTACCAGTTCCGCCTATGATG 23090 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ============================================== ================== 4 30 99.2 45 GATATAAACCTAATTACCTCGAGAGGGGAC # Left flank : AGAGTTTGATTAGGGCTTTTAGAGAACTTGACCCTAGTCTCTATGAGACAAGTTACACAGGAGGGCATTAATGGGACTTTACTTTAACCTCAGCGAAGAAGAGCGTGAGTTTGCCAAACAAAAAACCATGTTTTGTCTGATTATTTATGATATCCGAAGTAACAAACGTAGACTTAAACTCTCGAAATTACTTGAGGGTTATGGCGTGAGGGTGCAAAAATCCTGTTTCGAGGTCAACCTGTCAAGAAATGATTATCAGTCTCTCCTTAAGGATATCGAGGGCTTCTACAAGGCTGATGAAGAAGACAGCATAATAGTGTATGTGACAACCAAAGAAGAGGTGACTAGTTTTAGCCCCTACCATAGTGCTGAAAAATTAGATGACATTCTCTTCTTCTAAGCCTTTATAGACCTTTAATCATATGGTACACTATAGATAGTGTTTCCAGTAGGTCCTACATCTTGTGCCTCTAGCAACTGCCTAGAGCACAAGATATGGG # Right flank : CTTTTTTGAAAATTTTGAAAACATTATTGACACCGCTTCCAGAAAGTGTTAGACTAAAAGCACATTAAGGGCGCCCAATGAGTTGAAAAGTACTTTCAGCTTTTGGGTTTTTTTCATACAAAGATGAAGGAGTCGAATGAAAAAATTAGTATTTACTTTTAAAAGGATCGACCATCCTGCACAAGATTTGGCTGTTAAATTTCATGGCTTCTTGATGGAGCAGTTGGATAGTGACTATGTTGATTATCTGCATCAGCAGCAAACAAATCCCTATGCGACCAAGGTAATCCAAGGGAAAGAAAACACGCAGTGGGTTGTACATCTGCTCACAGACGACATCGAGGATAAGGTTTTTATGACCTTATTACAGATTAAAGAGGTGTCCTTAAACGATCTGCCTAAACTCAGTGTCGAAAAAGTTGAGATTCAGGAGTTGGGGACAGATAAACTGTTAGAGATTTTCAATAGTGAGGAAAATCAAACCTATTTTTCAATTATTT # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATATAAACCTAATTACCTCGAGAGGGGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //