Array 1 362107-364236 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028927.1 Pasteurella multocida strain 9N chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 362107 28 100.0 32 ............................ ACCGTCCATTCTTGCGTGACATATTGCGCTTT 362167 28 100.0 32 ............................ CAACTGTCACGCATATTATCAATTTTGAAACC 362227 28 100.0 32 ............................ ATATAAAAACTCTGAAAATACACTGTGCCTTG 362287 28 100.0 32 ............................ TCATCAGTGGATTAGCGAGCGTTGCCGGCACA 362347 28 100.0 32 ............................ ATTAATCAAATGCTTACCAAGGCTACTACTAA 362407 28 100.0 32 ............................ GAGCAATTCACGTTGTGCATAACGCACGTTTA 362467 28 100.0 32 ............................ GTCAGATATTTTTACAAGAATGCCTGCTTGGA 362527 28 100.0 32 ............................ GCACTTTGTGCATCGGCTTTTTTATTGCTCCG 362587 28 100.0 32 ............................ AATCTCTAATTGTTCTTTCCGCTCTGTCATTT 362647 28 100.0 32 ............................ GAACATATCCAATTTTAATTTGCTGATTTATT 362707 28 100.0 32 ............................ TTCCCAATTCGAGTGGTATTGGCTTGGTAAAT 362767 28 100.0 32 ............................ GTCAAGTGTTTGAAAATATGCTCTACGCCTAC 362827 28 100.0 32 ............................ GCACTTGATCCGCCACATCCTGCGGAATGGTT 362887 28 100.0 32 ............................ TTAATCCCAAAGTTTTAATGAATCTTTTTTGA 362947 28 100.0 32 ............................ GGTTGTTGATGAGTTGGATTCTGTAGAGCTTT 363007 28 100.0 32 ............................ TAAGCTTGTGGCAGTCGGTGTGCAAGTGCCAG 363067 28 100.0 32 ............................ GGCTGGATCATAACGCCCACCGTTACCCGTGT 363127 28 100.0 32 ............................ ATTTTGTCTAAAATACCAATCACAATGTCGTG 363187 28 100.0 32 ............................ TAAAACATACCGATGGCTTTTCATCTCTTGAC 363247 28 100.0 32 ............................ GCCATTTACTCGACGAGTTGCCTTTTCTACTG 363307 28 100.0 33 ............................ AGAAATGCTAAAAAAAATGTTAGATTTTTACAA 363368 28 100.0 33 ............................ CTGAACGCGTTTATTTTTTCGTGAATAATAAAA 363429 28 100.0 32 ............................ GATTTGCGAACTTGACAACGCCAACCAGATTT 363489 28 100.0 32 ............................ ATTTCCCATACGATTAGCATAAACTCGGTTAG 363549 28 100.0 32 ............................ ACACCGACAACCATCGCATCTGATGCTTATCA 363609 28 100.0 32 ............................ GCGGTATGTCGTCAGCCCAATTAAAAAACTGC 363669 28 100.0 32 ............................ ATTATTTCGTGCGTATGGGCTCCAGCCACCAC 363729 28 100.0 32 ............................ ATAGCGGCTGAACTCTCAAAAGATTGACCGAG 363789 28 100.0 32 ............................ TTGGTGATTCGTACAGTTGAAATCAACGGCAC 363849 28 100.0 32 ............................ AATTTCAATCATCTCGAAAATATCTTTACAAG 363909 28 100.0 32 ............................ ATTGATTGAGAGTGGATATGTTTTCTCACCGA 363969 28 100.0 32 ............................ TTTCAGTCTCTGACCGCCAGCATAGACCCAAC 364029 28 100.0 32 ............................ GACCCCATTGGTCTAATTTCGCCCACGGGATT 364089 28 100.0 32 ............................ TTCCGCATATTCAACCGTATTATCTTCAGTTG 364149 28 100.0 32 ............................ GCAAGTGGCACTTGTGCGATTGAGCCGTATTT 364209 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 36 28 99.9 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGCCTACCGAACACCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAAAGTTTTCTAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : AACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATGCCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAAACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCCAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1321395-1321628 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028927.1 Pasteurella multocida strain 9N chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1321395 36 100.0 30 .................................... CGAGCGAGTAAAAACATCATTTTCTCGTAC 1321461 36 100.0 30 .................................... ACAAGAACCAGTTTGTTTATTGCACCCCTC 1321527 36 100.0 30 .................................... AAACAAAGCTTTGACGTGTCACTGCTGGTT 1321593 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 100.0 30 GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Left flank : ACGCTATGTTTTTTTTTAAGCTTGTCGACAATTTTGTCTGAAATGATTAATTTCATATCCATTTCGGGTACCTATAAATTTTTCATAAATATTATTATTTGCTATAAACATAAATCCTCCGCATATTGTGTATATACAATTGTATATACAATAAAAAAAAAGTCAACCCTTTCTTAGCAAAAAAATATTACTTACCTTTATTCAGGTGAACGGGTGACAAATTATTAAGCAATTTCTTTAAAAGATGAGGGGAATTTACACACCACTCACAAAACTGCGTTTTGCCTTTAAAGCCAGTAATATCAAGGGATTGTAAAAAAGCTGGTTAAAAGATGCGCGTTTTTTTTGTGGTTCAAATTTGAACCAAAAAATAGCACAAAAATACAGCTAAACAGGCGGTTGGATTTGGAGTAGACCCGTTAAAAATGAAAAAAGACTACGCTATTTTTCAATTTTAACGTGCCAAGATTATACCAGTTTTTAGAAAAGATATTATGTCA # Right flank : TCTCGTGTCCCTTATCCCTTGTGGCACAAGGGATAAGGGCGTTTTTAATGCTCAAAAATTACTTGAATTCACGATATTAAGCATTCTATTTTTAGAAAATTTTTCTTAAAAAGTCATTGATTTTGTCTGACTGGGATAACATCTGTTGTATGTTACCCCTGGTTCTGAGATGCGCTAGGCTAAAATAGAGAATAGTCTTTTTGTCTATTTTTATAGAATAGGTAAATAGTTTACTTAGAACAGCAACATTTGATTTGCGTTTACTTTTTTCTCTTGAAGTCTCAATCTCCCCAAGAGTATTTTCATTCCTGCAAATTGCTTTTCTGTCACTTCTAAACAACGTATTGAACCTTCTTCAGGGAGGTGTTCACTGAGCCGTTTATTATGCTTTTGCATGGAGTCTCGACCTCGAATAATTCTAGCATATACAGAAAGTTGTAACATTTGATAACCATCTTTTAATAAAAATTGACGGAATTGATTTGCTGCTTTACGTTTTG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 3 2128875-2130916 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028927.1 Pasteurella multocida strain 9N chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================================================ ================== 2128875 28 100.0 32 ............................ ATATTGGAAAATTCTTTATTTTTTCGTGTATC 2128935 28 100.0 32 ............................ ATCTAATGATGCAGGGTATTTATCTAAATGTC 2128995 28 100.0 33 ............................ CTAACGCCCAAAAACTATTCCATTTCAACATTT 2129056 28 100.0 32 ............................ AGTAAACAATCTATTTACCTTGATGCCAATAA 2129116 28 100.0 32 ............................ ATTACAATACCAGACCATAAGACCGAGGATGG 2129176 28 100.0 32 ............................ TGTTTTGGCAGTAAGTGCGACGACTTCACCTT 2129236 28 100.0 32 ............................ ATACACATTATATGACCAAGACTGCCAGTTAA 2129296 28 100.0 33 ............................ CCGTAAAACTCATTTAAAAGGTGTTTAAAGTAT 2129357 28 100.0 32 ............................ GACGGAAGACCAAAGTTCTTTTGAATAAGAAA 2129417 28 100.0 32 ............................ ACATATGCAGTAATTGACATGTAAAACCCCTT 2129477 28 100.0 32 ............................ ATTACTTCACCTCTTGCTCAAATGGGGTAATG 2129537 28 100.0 32 ............................ TTTTGCACAAACAATTAGGTCACCAATCTATC 2129597 28 100.0 32 ............................ AAGATAGCCGAGCAGGGCGCAAAAGCTATTCT 2129657 28 100.0 32 ............................ GCTTATGTATCGCGTTTTTTAATTCGACGTAT 2129717 28 100.0 32 ............................ AGAACCAGAACCTACATTTGTTCCACCTTGAT 2129777 28 100.0 32 ............................ GAATTTATTAACACTCAAAAGCTCTTGCCCAC 2129837 28 96.4 32 A........................... ATTATCCAATGAATACATGAATTAAATGATAT 2129897 28 100.0 32 ............................ ATAAAACCATTTTGTAAACGTTCGATATGCAT 2129957 28 100.0 33 ............................ ATTCAACAACACACCCCTTACCAGTTCCAGCTG 2130018 28 100.0 32 ............................ ATTTTTCCCTACAGTTTCGACTTCATATCCCT 2130078 28 100.0 32 ............................ GTTGGTTGTGGCGGAGCAGTGGATAACGATGT 2130138 28 100.0 32 ............................ TTATACTTTTTTACACTCAACCGCAGCGATTT 2130198 28 100.0 32 ............................ AGTCATTCTTTCGCAGATAAAGGGAAAAAAGA 2130258 28 100.0 32 ............................ TACTCTATCGAACCCCATCCAAAACGGCTGGG 2130318 28 100.0 32 ............................ TTTAACTATGCAGCAAGCGAAACCAAGGAAGA 2130378 28 100.0 32 ............................ GTTTGCAATGTGCCAGTTTTAATACCGACCGT 2130438 28 100.0 32 ............................ TCTTTTCTCAGGATTGTCTTTTAAATCCTGAT 2130498 28 100.0 32 ............................ ACCAGAAGAACTGTATAGCGAAATGCTTTATT 2130558 28 100.0 32 ............................ TGAATAACGTATTCAGACGGAATGCCACCTTC 2130618 28 100.0 32 ............................ TATCTTCCACATTCCACGTTATATCGATTACA 2130678 28 96.4 124 ............G............... TCTTTGATTAATTCGTTATGAGTTTTATTCGTAGGCAGCTTAGAAATCTTTGATTAATTCGTTATGAGTTTTATTCGTAGGCAGCTTAGAAAGACTGGAGTGAGAATGTCGTCGAAAACTTACA 2130830 28 96.4 32 ............G............... GCGTGCTAGTTTGTCTGCTGTTGCTTTCAAGA 2130890 27 85.7 0 ....................-..TC..T | ========== ====== ====== ====== ============================ ============================================================================================================================ ================== 33 28 99.2 35 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGGATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGCTTAGCCCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAGCAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTGCGTCATAAAGATACAAAAAATATTGGTAAACGTCGCAAATCCAATACCCCCCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTTTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATCGGTTCCATACTTGATGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TTGACTGTTGGTATATGACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCTATCAGTTTGGGATCCGTGGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTTACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGAATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTCTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAGGGCATCGTTTG # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.24, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //