Array 1 1733-7334 **** Predicted by CRISPRDetect 2.4 *** >NZ_QNJH01000807.1 Xanthomonas oryzae pv. oryzae strain GD415 scaffold806, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 1733 31 100.0 34 ............................... ACCATTGGTGGTGAAAAGGGCAATGGCATGTATC 1798 31 100.0 35 ............................... ATCATCGTCGGTGGTGTGGGTATCTACTTCTTCGT 1864 31 100.0 34 ............................... ATCCACTCGCCGCCGGTGCCCTGCACAGGGTAAT 1929 31 100.0 35 ............................... ACCAGTGCCTGTACCAGCACCTTGGTGTCGGTGTC 1995 31 100.0 36 ............................... GCAATTGATCCCGCCCCCAGGGCAGCAGCCACGCCA 2062 31 100.0 34 ............................... TTCGTCTTTGGCAGCCCTTTCTGCTTGCCACCTG 2127 31 100.0 36 ............................... AGCTAAAGAAGAAGTCTGCTTCCATGACCTGGACAA 2194 31 100.0 36 ............................... TTGCTATAGAACAAACCAAGCTCCCGGATCCTGGGG 2261 31 100.0 34 ............................... GCAACCACATCCTCAACAGCAGTGCCGGTCGCTA 2326 31 100.0 34 ............................... ATGTACGAGGCAAGCTGCGGAGCATCCGACAAGA 2391 31 100.0 36 ............................... TTTGCGTCCAGGCCCAAATGCAAGCATGTCAATGCA 2458 31 100.0 34 ............................... CAGAAGCTCACAGCCAACCCGCAGAGACAGCCAT 2523 31 100.0 36 ............................... AAGCCGTTGCTGTGTCCTCTTCGCCACGATGGCGTA 2590 31 100.0 34 ............................... TGGACATCAAATGGTGAGGCCTTGCGTTTGTGCA 2655 31 100.0 35 ............................... ACCAACAGCACCCACGGCGTCTCCTACAACAATGC 2721 31 100.0 33 ............................... ATTGTCTAGTCTCTCTGTCTCAGTAGTTGGGTA 2785 31 100.0 33 ............................... TCTTGCTCTACACTCAGTAAGTATCTCTCATAT 2849 31 100.0 35 ............................... TGGATGTTCGTAGAGTACCCCGAACCGACGCTTAT 2915 31 100.0 34 ............................... TGGATACTCTGCAATCTTCAGGAAATCCGTTGGT 2980 31 100.0 33 ............................... GTTGCCGTGCTGCTAAAGGTTAGCTGCACACCG 3044 31 100.0 34 ............................... ACGGTGCGGGCATTGATCCAGGGACAGGCCAATA 3109 31 100.0 33 ............................... AAGGACAGCAAGACGGCCAAGGCGGGTGCATGT 3173 31 100.0 33 ............................... AGTGTCTGCGAGCGTGCTTGCCAATAGGCTAGC 3237 31 100.0 34 ............................... TTTCCAAAGACCCATAGAGTTCAGGTGTGCCGCT 3302 31 100.0 35 ............................... CCTTGGTTACAGCGTCAGCGTCGTCACCTATGGCA 3368 31 100.0 34 ............................... TATACCAACCCCAAAAATGACACTGGTATGGGTG 3433 31 100.0 33 ............................... TCAGGGTGCAGGAGTTTATCTACAAATACCGTA 3497 31 100.0 36 ............................... CTGCCCGAACACTTTGTCGAACCGCCCACTGAGGTG 3564 31 100.0 33 ............................... GGTTTTGAGCGTGAACACGAAAGGTACTGGGGA 3628 31 100.0 36 ............................... TGCAAGTCCGAGCCCTGTGGGTTGATCCCTGAGCCC 3695 31 100.0 34 ............................... GTGCTTATCCTCCGTGGCTCTTCCATAATCACAC 3760 31 100.0 35 ............................... GTGCAGTCACTTGTTGAGAGTGGCAAGCAGACTGA 3826 31 100.0 34 ............................... AATGCCTGCCTCTGCACAGCTGTTGACCGTGGCG 3891 31 100.0 33 ............................... CTAAAAACAAGCTCAGGCTAGAGGGACGGCGGA 3955 31 100.0 35 ............................... AACTGGGCAAGTCCTAAGCAGAGGTCAGCGCTGTT 4021 31 100.0 34 ............................... CACCGTAACACACCCGTCAGGGGATCATAAGCCA 4086 31 100.0 34 ............................... TGGGTGCAGCATTTTTAGGGGATGTTGAGCACAA 4151 31 100.0 36 ............................... TTGGTTGGCGCCTTTGACCTGGCTGCGCAGATCTTT 4218 31 100.0 37 ............................... TCTGCTGCTTTCGGCGTGGATTACAACAGCCTCAGCG 4286 31 100.0 34 ............................... ACCTTGCAGCCCTTAGCTTTGCAATACCCCTCAT 4351 31 100.0 35 ............................... AGCACTGTGCTTGGCGGTATCGGCGGCGGTGCAGG 4417 31 100.0 34 ............................... GGTGGCAGAGTATATGCAGATATCCCACCCGATT 4482 31 100.0 36 ............................... TTCGGCGTCCCGCCGAGCATGATTGGGCACAGCAGT 4549 31 100.0 36 ............................... TGTTGGTGACGCGCCACCTTCCACGCCCGGTGATGG 4616 31 100.0 34 ............................... GTGCATTACTTCACCAAAGATCGCGCCGACCCCA 4681 31 100.0 36 ............................... CGGGGTCTTATAGCGATAACTGGACGATCGAGCAGG 4748 31 100.0 34 ............................... ACCTGTGGCGCGTGCGTATCACCGACCGCGACGG 4813 31 100.0 34 ............................... TGACTATGACTCTGTCGCCCTGGCTGCGCCGTAT 4878 31 100.0 34 ............................... CGCCGACTCTAGGGCAATGCGCGTTGCTGGAGGG 4943 31 100.0 35 ............................... AAGCTTGATCTTGTTGGCATAGGACCAGCGCGGAA 5009 31 100.0 34 ............................... TGCTGTTAGGTCCGCAGTTACTGTATACACCTGC 5074 31 100.0 33 ............................... GTCACATTGGTTGATCCATCAGCTCCAGATCCT 5138 31 100.0 34 ............................... CCACGGACAGTGCCGAGCGCAAGGGTATCCCACT 5203 31 100.0 34 ............................... GTCTGGAATACACCACTTACCCGACTCATCCTGC 5268 31 100.0 35 ............................... CTTAATCCCGGAGATGTATACGCCACTTCGCCGGC 5334 31 100.0 35 ............................... CACGCCCGGTGATGGTGATGGCCACGGTGATGACC 5400 31 100.0 36 ............................... GCCTTGCTCATGCCGTTGGCGCTGTAGTCCCCGTAG 5467 31 100.0 34 ............................... ACATCGTTCGACAGGGTGATGGCGTTCGGTTGCA 5532 31 100.0 35 ............................... CGCGCCAAGGGGGCACCTGCCCGCTCCAACTCCTC 5598 31 100.0 35 ............................... TCACGAATAGGCGCGGTCCAGGGCCACGCAGTGGC 5664 31 100.0 34 ............................... GCCAACGCGAAACCTCTGAAACGTTGCATTGCTG 5729 31 100.0 36 ............................... CCGACGTTGGCCAGCCTCTACGAAGGCGCTGTAGCC 5796 31 100.0 34 ............................... AGGTGTTGCGCGCTGTCAAAGCGTCTGCACGCGT 5861 31 100.0 36 ............................... ACCAAAGATCGCGCCGACCCCAATAAGCCGGTGGCC 5928 31 100.0 35 ............................... AAGATTGGACCCTCGCTGGTGATGATCGGCGCGGC 5994 31 100.0 35 ............................... ATTTCATGAGCGCGCATGCGCAGATCAGCAAGCAA 6060 31 100.0 36 ............................... GTGATGGTGCTGGAACAGGCGTTGTCGGCTGTGCTG 6127 31 100.0 35 ............................... TAGATCGCCCACAAAGGACCGTGGATATGTGGACA 6193 31 100.0 34 ............................... TTTCGCGGCGTGATCACCTGGTCGGCGATTAACG 6258 31 100.0 33 ............................... TATACGGAGCGTGGAGGGTGATCTTAAGGTTGC 6322 31 100.0 34 ............................... ACCATCTGCGTTTCTGCATCGCTGAAAAGGCCGC 6387 31 100.0 34 ............................... ATCGTGCGGCATTGCCCAACGCCTGATGCGTTGC 6452 31 100.0 35 ............................... TGGATGCTGACGTTCGTGACTTGCGCGCCGCTGTC 6518 31 100.0 35 ............................... GGGCGCGGGGCGAGCGGGACGACCTGGATGCTCAT 6584 31 100.0 34 ............................... GTTCTATACGCGGAACGGCGCGGGCACGCTGCTG 6649 31 100.0 34 ............................... GTGGCCCACGTCGAGTCGCAGGCGAAACGACCGC 6714 31 100.0 35 ............................... ACGTTCAAGCCGCTCGCCCTGGGCGACCGGTGGGA 6780 31 100.0 35 ............................... CCGACCTCAAGGCGCGTTCCTCCGGTTCGATCCAA 6846 31 100.0 33 ............................... ATGGGTAGTAACGTATCCACGGCCCGTGAAGCG 6910 31 100.0 36 ............................... ACGTAGAACGAGCGCTTGTTATAGCGCTCGCGCCAC 6977 31 100.0 34 ............................... CTGCACATACTCAATCAGGGCGCTGTCGGTGCGA 7042 31 100.0 34 ............................... ACCGCATCCCGGAAGACCCACAATGTTGTCCGCC 7107 31 100.0 36 ............................... GCCCGACGGGTATGAGCAAGTCTTTGCTGGGATACC 7174 31 100.0 34 ............................... CGCGACGGGCTGGAGCTGGTAACCCCGTCGCAGA 7239 31 100.0 34 ............................... GAGTGCCCGGGGTCGGTGTCGGCGCAGGCTGGCC 7304 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 86 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATCACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGG # Right flank : ATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCGTGAAGAACGAGCGCACCAATTCTGGTCGAGCTGCAATGTCGGACAACTGATCATGCACCCGATCGGCCAGCTTCTCGCCACTGCGCAGCGGGCTGCGCGCTACGCCCGTGCGCTTGGTGTAGCTCCACACCAACTCGTCGGGATTCAAGTCCGGCGCGTCACCCGGCAGGAAATGCAGCGTCAGCCTGCCCTTCAGGCTGTCCACGTCATCGCGCAAGCCACGGGTCTTGTGGGCAGGCAAACCATCACCTGATTAGCACGATCTTTCAGCACAGTCGCAGCCAGTGAGAGCCGACCGGTCGATGGTAGGACCGTCGCTCCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //