Array 1 180301-179295 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASVS010000002.1 Listeria seeligeri strain FSL L7-0679 NODE_2_length_421694_cov_23.488671, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 180300 29 100.0 36 ............................. ACTGTAGTTGTGAATGACCAGTTGCTAAAATCCCGA 180235 29 100.0 38 ............................. ACAAAGAAGTTCCGGGCGACACAAGTATGGGACTGGCT 180168 29 100.0 36 ............................. AAAATTATTGACGCAGGTGTGAAGCTTATATTTGCG 180103 29 100.0 37 ............................. CTAAGTCCTTGCGATTATCCGGTAGCGGAAGTATAAA 180037 29 100.0 36 ............................. ACATATGTTTTTTCATGTTAGAATCCATGAAGCATT 179972 29 100.0 35 ............................. ATCTTCAAAGGTCAAGAAGTTGCCGACATCTCCAA 179908 29 100.0 37 ............................. CATATGATTATCATGAATCAGGATTTAAGAGATGTAA 179842 29 100.0 34 ............................. AAAAATAACCATCTGATCCACTTTAGCGAGCTGA 179779 29 100.0 34 ............................. ACGGGTCTAACACGCCATGACTATTTTTATCATC 179716 29 100.0 35 ............................. CATGGATTTACTATGTGGGATTCTATCTTGTTAAT 179652 29 100.0 36 ............................. TGGAGCGAAAAAGAAGATGAGTTTATCAAAAAATAT 179587 29 100.0 36 ............................. TTGGCTAAACTAATCAATCCGTGGTTCGTATCTCTC 179522 29 100.0 38 ............................. TTGATAGCTCCTACCAAACCCGCTATTTTAGAATAAAC 179455 29 100.0 36 ............................. ATATTATCAATTAACGCCATCACAATAGCAATTATC 179390 29 100.0 38 ............................. TAAGAACCGTTGACACCTGTGCTTGAGTAACCTAAACC 179323 29 75.9 0 .......C.......CA.....CA...CC | ========== ====== ====== ====== ============================= ====================================== ================== 16 29 98.5 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CTTCAAGATTTGGTGGTGAATATATGTATGTAATTTTAATTTATGATATTTCTGTGGAAAACGGTGGGGCAAAGGTATGGCGCAATGTGTTTAAGATTTGTAAGCGATATTTAACACATGTCCAAAAGTCTGTATTTGAAGGTGAAATAACGCCTGCTCTTTTAGCGAAATTACGGATGGAGCTAGACAAATATATTCGTTCAGATATGGATTCAGTGATTGTCTTTTCCAGTAGGCAACAAAAATGGTTAGAAAAAGAATTTTGGGGACTGGCTGATGAAAAAACGTCGAATTTTTTCTGAATAAATATTTCTGTTGACCTCCAATAGTGCAAAAAACACTGGAGGTCGACAGAAACGTGGGAAGCCTTGGGGGAGAATGGTTTTTGGTGAATTTTCTTGTTTGAGGCGAGAAAATAAAATAGGTTTTACCTGCTTTTTACGGCGGTCGACAAAAACAAGCCCGTGAGGTAAGATGGGAGTAGGGAAAGAATTTGGCGG # Right flank : CCACCCACCCTTAAAGCCAATAATCTGCTCTAAGGGTTTTTTATTCAAAAAACCACCCCCCAACCCTCCATTTTTTTCGTCCAGCGAAAACCGTTTTCGAAATACTTGTAACCGCTTGCAAGGGTGAAGCTCTATAACTATAATGAACGTAGTAATTGAGTCAGATATAATATTTTTTCAAAATTAGCTAACTGAAGAAATAGAAAACGGAAAAATGGGAATATTTAATTATGTTTTCATTTTAATCTAACAAAAAGGAGAGCTTAAGTATGAAAAAAATCGTATCAATCGGTTGTATTGTGGGACTTTTAATGCTTTTAGTGGGGTGTGGAAGTGAAGAAGCATCGAGTTCAAAAGTAGAGTTTTACACAGATAAAGGTGGAGAAAATGTTGGTATTTTGAATTCCATGTCAAAACAGATTGAAAAAGATGGAGGCGTTGGGTTTAAAACAGTGGGGTACACAGATGTGACTTCATATGAGACAGCGGTGCAACAGTCA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 190501-188929 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASVS010000002.1 Listeria seeligeri strain FSL L7-0679 NODE_2_length_421694_cov_23.488671, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 190500 29 100.0 34 ............................. TTTTCAATATATAAACTTTATAATCAGCCTTCAA 190437 29 100.0 35 ............................. ACGATAGCATAAGCAAGAGCCTTATTTTTGTCGGT 190373 29 100.0 36 ............................. ACATCATTTAGAAATCATGTTGCGCGAGAAACCAGC 190308 29 100.0 34 ............................. TTCTGTCCTTTGCCTTTTTGACAATAGAGTCCCA 190245 29 100.0 39 ............................. AGTAGTATACTTATCGTAAACGGCTTTGGGTTTTAGTCC 190177 29 100.0 36 ............................. AAAAAAATATTGTCCTCGGAAATGTGATATAGTTCT 190112 29 100.0 36 ............................. ACTTAACAAGTCCTACCTTAACGGAGACTATTCACC 190047 29 100.0 37 ............................. TTGGTTGTCACTCCTATATACCGATTTGTTAGTTTTT 189981 29 100.0 35 ............................. GCGTTTAGTTTGTCAAATGTAGATCAAACAACAGC 189917 29 100.0 34 ............................. ACAGTCAAATAATTTATGAAGTCGCATTTCATGA 189854 29 100.0 38 ............................. AAAGCAGTTGAAAATGCTAGCTCTGAATATAAATCAGA 189787 29 100.0 34 ............................. GCTGATATGCTATGACATCGCCTAAAATGAGTTC 189724 29 100.0 34 ............................. CCAGATTCAGAAATGACCTGTACTGAATCGTTGA 189661 29 100.0 35 ............................. GTTTTTTGTAATGCCATTTAACTTTCTCTCCTTTC 189597 29 100.0 36 ............................. AATCAAAGTTGATATTGACCCCCAGACCAGACCAGT 189532 29 100.0 36 ............................. ATGCCACTCACATCTTGATTTATATCGCTCGATACT 189467 29 100.0 35 ............................. TACCATGCGTAAGTATTTCCTTCTGTATAGCCGCC 189403 29 100.0 34 ............................. ATAAAAAATGGAAAAGAGGAAAAACAATGACAAC 189340 29 100.0 34 ............................. CAATACCAGAAAAAGCACTAGACATTTTCCTAGT 189277 29 100.0 34 ............................. CTCGCTATCGTATTTGCTACTCTATTGTTCTGTA 189214 29 100.0 35 ............................. ACTTTTCTGGAGTCAGTACAACAGACTCTTCTTTC 189150 29 100.0 34 ............................. TCGCTTTCAACAACATGACCATGCCCACGCTTTT 189087 29 96.6 37 .................C........... ACTGTATTATACAGGAGCTCGTATAGGCGAAATAACG 189021 29 96.6 34 ........................C.... TATATTTTATTCGCTTGAATAGAGTAGGGTTCTC 188958 29 86.2 0 ........C....C..A...........G | T [188931] ========== ====== ====== ====== ============================= ======================================= ================== 25 29 99.2 35 GTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : AAAAGTCACCGTTCCATCTTTTTTCTCTTTTGTCTCTGCTTTGCTCGTCGTTGAATCATTCCCACAGCCCGCAATCAGTAGTAAAGTACAAAACACCACCATCAACTTCCAAACATTTTTCTTCATCCTTTTTCTCCTTTTTTCTATATAGTTTTTAGCAAAATAAAAACCCAGATAAATCAAAAAATAGCCCAAAAGCCATCTTCCAATCCATCTAGGTTATGCCCAAAATAGGTAACATTCCAGAGTGAGGTATTTGTTTATAGGATGATTTTAGCACAGATGGTAAGCGTTTACAAGTTTACGCATTTTCTGTCGATGTGTGGTAGCGTGGAAAGTACTGGAGACAGACAGATTTGTGGGATGCGTTGGGAGAGAATGAGAGTGGGGGGGATTTGGGTTTTGAATAGTAATTTTAGGAAGGTGGAAAGCCGATTTTGAGATAGGTCGACAAAAATAGCCTTGTGAGGTAAGATGGGAGTAGGGATGAAAATGGACGG # Right flank : CCTTTCAATCATGCTAGTAAAGCTGCAGAAATAATTATTTCGAATTATAAATTCATCCAGCAACTAAAACATAGCAAGTAGCACTATCATAAATTTTTCAGTCAAAAAAATTAAAAATCAAATTCTATACTAGTTTTAAGGTATAAATCTTTTTAACAAAAAGTGAAAAATTTCAATAAATCATATAGCAAATGTTAAACAAAACACTAGTATTTTCAGTGTTTTTTTTCGCTAGCATTCACTCTTTTTTTGTGTTAAATTAAACACAAACAACTGAGGGGGGGTGACAAAAATGAGACTAAAAATAAATTGTGATTTCGACTCCAACATAATACCGAAAGACTACAGAGGTAAAATAGTCAGTTTATTCAAAACGGGAATTGAGAAATCTAGTCCAGAAAGATATAAAGATTTATTTGGTAGTAACAAGCGGAAAAATTACACTTTTTCGATATACCTGCCTAAGCCTAAAAATAATAAAAATGAAATTTATCTTGAAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 3 197265-196721 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASVS010000002.1 Listeria seeligeri strain FSL L7-0679 NODE_2_length_421694_cov_23.488671, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 197264 29 100.0 37 ............................. TTTGTTAAAATAAAAGAAGACTTGTACGAGTGCGATT 197198 29 100.0 34 ............................. GATGAATACGAGGATGAAGATGGTGGAGATGAGG 197135 29 100.0 35 ............................. ATAACAACCTTATTTATTGCTTGCAAAAGCCCTGC 197071 29 100.0 35 ............................. TTTTCTAACATTTTATCAATATAAGATTGAGCTAT 197007 29 100.0 37 ............................. GTAACAAAGCTATAACGGAAGATTTAAATGAATTACG 196941 29 100.0 34 ............................. TACTGTAACTCATAAAACTTTCTTCTTGTAATTT 196878 29 100.0 35 ............................. GGTCGAATTAGTTAATATTGTCTCGCCTTTATTTT 196814 29 100.0 36 ............................. ATTTGAGCTTTAGTTATTTGATGTGGATTATTTATT 196749 29 96.6 0 ............C................ | ========== ====== ====== ====== ============================= ===================================== ================== 9 29 99.6 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CGCGCAACAACTTCAGCCGATGTCCTGCTAGAAAAAGGCGCTGTCGAAGTCATTGCCTGCGCAACCCATTCGGTTATGGCTGGAAGCGCAACTGAACGCTTACAAAACTCAAAAATCAAAGAAGTTATCACCTCTGATTCCATTGATCTACCAGAAGATAAACAATTTGATAAATTAACAACCATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTTCAAGAAAACCGCTCATTGCATCCGTTGTTTTAAGAAAATCTATAAGCAGAGACTCAAACTGGGTCTCTGCTTTTTGTACGTTAACTTCTGTCGACCGATAGTAGTGTAGAAAACAAGGGGGATCGACAGAACATTGGATTCCTTTGTAGGAGAATAGGTTTGGTGGGTTTTTAGTTATGAAATTAAAGTTCGGTGCTTTGATTTTAAGAGGTTTTTTGGAGATCGACAAAAATAGGCGCTTGAGGTAAGATGGGAGTAAGAGGAAAAGTGAACGG # Right flank : GTCTCCCAGTCCACTTGCTTCAAGTGACCAGAAGTGTTTTAACTACTTTTAATCATCCAAAAAACACCAAAGAGGAGGAAACACTTATGAAAAAAGCATTTATCCCGCTTCTATTTTTACTATTCCTACTAGCTAGTTGTTCCGCGCCCAATGAAAAATTAACAAAAAACACCAAGATTTTTAAAGAAGGCGTCATTAATGCGGATTATCAGATTCCACAAAACCTAGCAGAGCTTGAATCTAACAGTGAAGATATCGTAAAAGTGAAATTACTACAAAATAAAGAAAATGGCAAAAATAACAGCACAATAAGTGAAGTAGAAATTATCGAGAAATACAAAGGGAATTTCGAATCAGGTGAGAAAATCGACATTTCAGAACCTTGGCTTTTAAACACAGGGGAGTACCAAGCTGTGGAAAACTACATTGCACTTGAAAAAGATCAAGAGTATCTCTTGTTTTTAAGCGGAGGACATGACGGGGATAGAGTAAGTTCTATC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //