Array 1 317339-318770 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACYAM010000002.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 642 A NODE_2_length_497703_cov_68.3558, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 317339 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 317400 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 317461 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 317522 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 317583 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 317644 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 317705 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 317766 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 317827 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 317888 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 317949 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 318010 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 318071 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 318132 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 318193 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 318255 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 318316 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 318377 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 318438 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 318499 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 318560 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 318621 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 318682 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 318743 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 24 29 98.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 334902-337049 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACYAM010000002.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 642 A NODE_2_length_497703_cov_68.3558, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 334902 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 334963 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 335024 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 335085 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 335146 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 335207 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 335268 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 335330 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 335391 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 335452 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 335513 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 335574 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 335635 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 335696 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 335757 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 335818 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 335879 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 335940 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 336001 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 336062 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 336123 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 336184 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 336245 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 336306 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 336368 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 336471 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 336532 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 336593 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 336654 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 336715 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 336776 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 336837 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 336898 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 336959 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 337020 29 96.6 0 A............................ | A [337046] ========== ====== ====== ====== ============================= ========================================================================== ================== 35 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //