Array 1 979983-981475 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP050750.1 Salmonella enterica subsp. enterica serovar Typhimurium strain ST46 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 979983 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 980044 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 980105 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 980166 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 980227 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 980288 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 980349 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 980410 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 980471 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 980532 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 980593 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 980654 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 980715 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 980776 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 980837 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 980898 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 980960 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 981021 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 981082 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 981143 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 981204 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 981265 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 981326 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 981387 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 981448 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 997607-999571 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP050750.1 Salmonella enterica subsp. enterica serovar Typhimurium strain ST46 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 997607 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 997668 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 997729 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 997790 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 997851 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 997912 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 997973 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 998035 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 998096 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 998157 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 998218 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 998279 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 998340 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 998401 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 998462 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 998523 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 998584 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 998645 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 998706 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 998767 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 998828 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 998890 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 998993 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 999054 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 999115 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 999176 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 999237 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 999298 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 999359 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 999420 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 999481 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 999542 29 96.6 0 A............................ | A [999568] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //