Array 1 96175-97362 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOBJ01000012.1 Escherichia coli strain MOD1-EC5831 MOD1-EC5831_12_length_100814_cov_47.2523, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 96175 29 100.0 32 ............................. TGATCGCCGGTCACGGAGCCGGGGCGCAAACC 96236 29 100.0 32 ............................. ATGCAACAGGTGCCAAAGCCCCCGACGGCACC 96297 29 100.0 32 ............................. CATGAGCCAGGACGACGCCCGGTCCGAGGGCG 96358 29 100.0 32 ............................. CGCAAAAACCATTTTTTCCCAGCTGGAGGTTA 96419 29 100.0 32 ............................. TCGCTGGCGGGGACCGATCATATCTGTCAATC 96480 29 100.0 32 ............................. GAATCATGATTCCGGACGACGTGCTGGCGCGA 96541 29 100.0 32 ............................. TAGACAGAGTAATAAATAACGCAGACAAAAAC 96602 29 100.0 32 ............................. AGTAGCCTGGAGGCGCTCGCGCGCCTCTTCAG 96663 29 100.0 32 ............................. TTTTGTGATTCAGTAATCGTTTGAGTATGTAC 96724 29 100.0 32 ............................. CGAATCCCAGCCTTGAAATTTTGGCTCATGGA 96785 29 100.0 32 ............................. CGCTGACGCGGTAAAAAGCGGGGCGTGATTCG 96846 29 100.0 32 ............................. AGTGCCAGCGCCGCGCACGCCTGATCATATGT 96907 29 100.0 32 ............................. GGGTTCTATTTCCTCGGGATTTGCCGACACGC 96968 29 100.0 32 ............................. GCAAAAACCGGGCAATCGCAAAAAGGCGTAAT 97029 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC 97090 29 100.0 32 ............................. ACGTGGTCATGGGTGCTGCTGTTGCAGAGCCA 97151 29 100.0 32 ............................. AGCAGATACACGGCTTTGTATTCCGTGCGCCC 97212 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 97273 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 97334 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 60808-59498 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOBJ01000018.1 Escherichia coli strain MOD1-EC5831 MOD1-EC5831_18_length_84008_cov_45.7259, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 60807 29 100.0 32 ............................. AAATATTAGGGTTTCGCGCTACGTTCGACACC 60746 29 100.0 32 ............................. GGCCGTATTAGCGGCCCGGTGTTATCGCTGGT 60685 29 100.0 32 ............................. CCTCGCGCACAGTTTCGCCAATTCCTCTACCC 60624 29 100.0 32 ............................. GGCTGGCAGCGTATCCTGGTGCGTGAATTAAC 60563 29 100.0 32 ............................. CCGAGTAAGTCGAGTTCACGGGCGCGGGATTC 60502 29 100.0 32 ............................. AATTTCCCGAGTTGGCCGCGGGCCTGCATTTG 60441 29 100.0 32 ............................. TGTTAATAAAAAAGGCCGGTTTCCCGGCCTGA 60380 29 100.0 32 ............................. AAGCAACAAATGCTGTATACGGCACATTTATA 60319 29 100.0 32 ............................. CCCTCGATCTCGATGCCCAATCGCACAGCGTC 60258 29 100.0 32 ............................. GTTGGTGGGGTGAGCAGTTCGCCGACGACCCG 60197 29 100.0 32 ............................. CGCGTTGAATATCTGGTTGATAGCGCCAGAAA 60136 29 100.0 32 ............................. GATTTATTCTAAACAATGTCCACATTGTGACC 60075 29 100.0 32 ............................. TTGCGCGGGTGCGAAAGTTGACGGTGGATGAA 60014 29 100.0 32 ............................. AATCCTGGTCGCTGGGTTATTTTGTATTGTGG 59953 29 100.0 32 ............................. CTTATAACCGGCGGCAAAAATCGTCGCGTTGG 59892 29 100.0 32 ............................. AGATTGGTTTTCCAGTCTTTGGCGGTTGGCAA 59831 29 93.1 32 .T..........C................ CTGTGCCGGTAGCCCCCTCCCTGTTCAGCCTC 59770 29 93.1 32 .T..........C................ TGTTTTAGAGATGTGTATTCAAAATCAGATAG 59709 29 100.0 32 ............................. AAATTGATCCCAGGGTGATTATCGTGGGGATC 59648 29 93.1 32 .T..........C................ ATTTCTTTAATTATTTAGCTGATGCTTTTAAA 59587 29 89.7 32 .TA.........C................ GGTAAAAACACGGTCTGAACCGACATTCATGT 59526 29 96.6 0 .T........................... | ========== ====== ====== ====== ============================= ================================ ================== 22 29 98.4 32 GAGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCTGTTTCACTGGGAGATGCAGGCCATCGGAGTAGCTGAAATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGATTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTCTCTTTTTTACCTGTTTAAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //