Array 1 96374-95431 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIVL01000010.1 Escherichia coli strain 449 contig000010, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 96373 29 100.0 32 ............................. CAACAAAACGCTGGAAGCCGGAACAGATATCT 96312 29 100.0 32 ............................. CTTATTGAGTTGGCACAGGAATTACATGAGGA 96251 29 96.6 32 ..A.......................... CCGCCGTCGAGTGTAATACCCTGATCCATCGC 96190 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 96129 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 96068 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 96007 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 95946 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 95885 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 95824 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 95763 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 95703 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 95642 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 95581 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 95520 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 95459 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAGATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 115823-114452 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIVL01000010.1 Escherichia coli strain 449 contig000010, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 115822 29 100.0 32 ............................. CCAGGGTGAGCCAGCGCCGCAGGAAGACACGC 115761 29 100.0 32 ............................. CGTTCCCAACGCTGAATATTGCTGGCATAGCC 115700 29 100.0 32 ............................. CCAATACGGAGAACCTTCATCGGTAATGGGGT 115639 29 100.0 32 ............................. GAGCGTAGAGATTCTCGAAACCGATCCGGACG 115578 29 100.0 32 ............................. GAAGTTGCGCGCACTAAGAAAAACAGGTTCGA 115517 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 115456 29 100.0 32 ............................. TCATCGAAAACCAGCGGATCGAATGGGACGCC 115395 29 100.0 32 ............................. AGACGGCGCGTAAAACTCATACGGCGACAAAT 115334 29 100.0 32 ............................. CTCGCGGGCGTGGAATTTAACGAACGGTTACC 115273 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 115212 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 115151 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 115090 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 115029 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 114968 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 114907 29 100.0 32 ............................. TTAAAACATTTTCCGAGCTTTGCGATTTATAT 114846 29 100.0 32 ............................. TAAAAATCATCATGGAAAATCAACCCGGCGAC 114785 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 114724 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 114663 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 114602 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 114541 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 114480 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGATTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //