Array 1 301728-297733 **** Predicted by CRISPRDetect 2.4 *** >NZ_CEJD01000017.1 Streptococcus suis strain S12X, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 301727 36 100.0 30 .................................... TTTCTAAGGTAAATGGTAATGTTAAAACAT 301661 36 100.0 30 .................................... ACGTATATGGGACAAGCGATGTCAAGGACT 301595 36 100.0 30 .................................... GCATGAACGCTGATAAGGGAGCTATTGAAA 301529 36 100.0 30 .................................... GCAATTTTCTTTACAAACTCCTACAGTAAC 301463 36 100.0 30 .................................... CTCTTAAAAATTGTAAAATGAAAGAAGGGA 301397 36 100.0 30 .................................... CTCCAAGCCTTATCTGAAGGTATTTGGTTC 301331 36 100.0 30 .................................... TCGCTTCCTCTTTCGGCGGACTAAGAGTCT 301265 36 100.0 30 .................................... TAGCCATATACTTCAGATACGAGGTCCGAT 301199 36 100.0 30 .................................... AGCGAGATGGTGCTCACAGAGCGAGTTGAA 301133 36 100.0 30 .................................... GAATGAATAAAAATGTAATATAGTCTGACT 301067 36 100.0 30 .................................... CCTGCATCAGCTTTAACTGTTTTAGGTCTA 301001 36 100.0 30 .................................... TCAACAATATTGTCAATATGTATGTTACTA 300935 36 100.0 30 .................................... TTGTATCTGACAAATTGGTGATAGCTATTT 300869 36 100.0 30 .................................... CTGGAATATCTGTTCCAGTACATTCTTTAT 300803 36 100.0 30 .................................... GGTTTAGTGAACATAAAACCATCTCCCAAA 300737 36 100.0 30 .................................... CAAAAGCGAGCTAACACGGTCGTTTGTGCA 300671 36 100.0 30 .................................... GCATCATTGGGAAATTAGATATTAAAGACG 300605 36 100.0 30 .................................... CCCTTATGGAACACTTGTCTATGTTGATTT 300539 36 100.0 30 .................................... TACAGAGAACTTTGACGCCTCTACCCCAGT 300473 36 100.0 30 .................................... GAGTCCATGAATTCCTTGGTGGCACCAGTA 300407 36 100.0 30 .................................... CACTTCTTTCTTGTGATGCACCATATCTGC 300341 36 100.0 30 .................................... GTCCAGTAATGGCAATCAGATGACCTTTCT 300275 36 100.0 30 .................................... AATCTTCTATTACATTAGACTTGGGCGGTC 300209 36 100.0 30 .................................... CTTCAATGTTATCTAAGCGTTCACCATAAA 300143 36 100.0 30 .................................... TTTTGTCATTCTTAATCTGGAACTCGTTAT 300077 36 100.0 30 .................................... TCCCTGTCCAAGAAATCGGACAAGACCTGA 300011 36 100.0 30 .................................... TAAGAAAGACTTTAGAAAGATTGTGTTGCG 299945 36 100.0 30 .................................... AGACAGTGGATGAGCTGAGAAAATGGGCTG 299879 36 100.0 30 .................................... ATTAGTTGAAAAATGGCGTAAAGATGCTGA 299813 36 100.0 30 .................................... TACTTTAACTTTACATGATAAAGATATTCA 299747 36 100.0 30 .................................... TATCGCCCTTATCACCATATACACCAATAA 299681 36 100.0 30 .................................... CCATTTGTTAGCAGGTAGCTAACATAGGTG 299615 36 100.0 30 .................................... GAGGGAGCATATTTAGTAGACGGGTTACAT 299549 36 100.0 30 .................................... AATATTTATTCCACTTTCAGCGCCAACAGT 299483 36 100.0 30 .................................... ACCTCATTCTTCCTCAAACGGTAGAGGTAT 299417 36 100.0 30 .................................... ATTCATTTTTAGGTTTAAATTCAAGCGGAA 299351 36 100.0 30 .................................... ATAATCAAGCGTCTTTCCAATCAAAACAAA 299285 36 100.0 30 .................................... GTTACATTTACAATATTATTATTAGACATT 299219 36 100.0 30 .................................... CTGAAGATAACAAACCGAACACGTCTCCTA 299153 36 100.0 30 .................................... CAAGCAAAAAGCAAAAGGCTACATTTTCCT 299087 36 100.0 30 .................................... ACTAACAACATTACAGCTATCGTTCCAGCT 299021 36 100.0 30 .................................... AACGTAAATAAGGAGCTTATAGAGTGTATA 298955 36 100.0 30 .................................... TGCTCTATTGTTCTTCTGGTGCTGGTTCTT 298889 36 100.0 30 .................................... CGTAAACACGTGAGAAGCGTTGATACATAA 298823 36 100.0 30 .................................... AGCCTTTCCAATTTTCTAAACATTGACATT 298757 36 100.0 30 .................................... AAGCGAGAATTAGACAACCATTGACGGTCT 298691 36 100.0 30 .................................... TTAACTATGTTTTGAACAAGCCTAACTACT 298625 36 100.0 30 .................................... TAACTTTATTTAGTAACGTTTATAACAGTT 298559 36 100.0 30 .................................... AGTGCTTGAGACGAATACGGAGGATGAATA 298493 36 100.0 30 .................................... CTACCGCTATCTGTACCTTGGCCACGCTAT 298427 36 100.0 30 .................................... GAACTCGAACGAATTCCGTGAGACATACCT 298361 36 100.0 30 .................................... ATGAACGATTGAATGAAATTGATGTCACAC 298295 36 100.0 30 .................................... CTGCAATTCGTTCATAACGCCACTGCGAGG 298229 36 100.0 30 .................................... TACTATTGCAGATGCTACAAACTACGCTAT 298163 36 100.0 29 .................................... AGCGAGGTGCTCAGCAAGTAGATAAGGAG 298098 36 100.0 30 .................................... TCAGACGGCTGTTTGCAATCAGTAACATCA 298032 36 100.0 30 .................................... CTGTAAATGTGTAGCTTATCCAACAGCTTT 297966 36 100.0 30 .................................... CGAAGGCATGGCCTTGATTTATCAAAGATT 297900 36 100.0 30 .................................... AGGTGTGTAGAAAATTCTGCTGAAATAACT 297834 36 100.0 30 .................................... ATAGCATCAAATATAAAAGCACGACCTGAT 297768 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 61 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Left flank : GAAAAACCAGAAGTGAAATCAATTATTGAAAAATTAGCAAATTCTATTACTGAACTAATCTCTTATGAATGTCTAGAGAATGAGCTTGATTTGGAGTATGATGAGATTACGGTTTTGGAGTTGATAAAGGCGTTAGGGGTCAAAATTGAAACTATCAGTGATACGATTTTTGATAAAATTTTTGAGATTTTACAAGTTTATCAATTTTTGAATAAGAAGAGATTTCTTGTCTTTATCAATGTGTTATCTTATTTGACGGTGGATGAAATTCAGAAAACTAGGGAGTATATTGAACTTTCCAATATGGATGTTCTTTTTCTAGAACCGAGAAAAAGAAAAGATTTCCCTCAGTATGTTTTGGATAAAGACTATTTCTTACTATCGGAAAATATGGTAAAATAAATACATACAGTACAAATATTAGAAACTATTCGAAACTGAAGTCTGGCTGAGACGAATGGCGCGATTACGAGATTTTGTGACAAAAAATAGTCTACGAG # Right flank : TGTTAAAAGACAAATTGATAGGGTAGTTAGTTTTAGAGTTGTGTTACTCTAAAAAGTTCTTTTAATTCTTAAAAGCAATGTAGCAAAAATATTTAAGTGTCAAAAAGAAAGGGGATTGTAGATGGATTCAAAATCAATTATTATAACTTCTGGTTATAACAGTAGTAGTGAATATTTTAACTTTAATCATCAAAATAATTACCAAAATAATTGAAAGTAAAAAGTATAGATGAATTTGATTAAGCTTCATTTTTTTAGGATAAAAACTAGTGCACAGACAAGTAATTCTCTACCATAAACTTTCAAAGGTAAAATGATGATTAACAACATCCAATTTTCCTCCAAGATTTCTAACTGACTATTGTCCCACCCTCTTTTCCATGCTATACTATATGTATTCGTTTTACTTCAAAGGAGACAAAGATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAGTTTGTGACGGACGGGATGATTGTTGGGCTAGGAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //