Array 1 4066869-4073027 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024238.1 Rhodoferax sp. MIZ03 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4066869 28 100.0 33 ............................ GGTAGAGTACGCCCGTATCAAGTCCGAGATTTT 4066930 28 100.0 32 ............................ TGTACCGCTGTTTGCCACCACCCCCACATTGA 4066990 28 100.0 32 ............................ CCAGAAAAATCAAGCCCCCCGCCCGCAAAAGT 4067050 28 100.0 32 ............................ ACAGGAAAAACGCCACGCTCTCCCAGCAATCA 4067110 28 100.0 32 ............................ GCATTGGCGCTGCTGTGGCGCAAGGGGCGGCC 4067170 28 100.0 32 ............................ GCCACGGCGACCCAAATCGCCGAGGTATTTGG 4067230 28 100.0 32 ............................ TGCAAGGGGAAGGCTTGCACGGCTGAGAGGCT 4067290 28 100.0 32 ............................ AAGCAAGAGGTGAAGGTGACAACCCGCGTGAT 4067350 28 100.0 33 ............................ GGGTGGATTGCACCAAACGCGGCCCGTCCATGG 4067411 28 100.0 32 ............................ GTTCAGCGCCAGCGCAGTCGGCATCTTGCCCT 4067471 28 100.0 32 ............................ AACCCGGTTGCTGAATTGTTCAAGCAGGTGTT 4067531 28 100.0 32 ............................ CAACAGGGAAGAGATCGCCAAGCGCATCCGTG 4067591 28 100.0 32 ............................ CGCAAGAACATGATGGACGATCATTTACCAGA 4067651 28 100.0 32 ............................ GAAATCATCGAACAACCCGCCAGCGCCCGTGC 4067711 28 100.0 32 ............................ AGATGATATTGGATGTGGCGCCGCTTTGTATC 4067771 28 100.0 32 ............................ TCGATGGTTTCGCCATCGTCCAACCAGCTTCG 4067831 28 100.0 33 ............................ TTGCAGCAGGCTATCGAAATAACGCCGGTCTAC 4067892 28 100.0 32 ............................ TAGAAAGAAGTCGGGCATGCGAATGAAGTTCT 4067952 28 100.0 32 ............................ TTCAGTGAGCCCCTGCACCGGATTGTGGAGGC 4068012 28 100.0 32 ............................ CTTTTCAGAGTGGCCGCACTTTCGCACCAACA 4068072 28 100.0 32 ............................ AGCAAGATGTCCGCAATCGGCGCGGATGCGCG 4068132 28 100.0 32 ............................ ACTGGTTGGCGGGAACACCCCGCGACCAATCA 4068192 28 100.0 32 ............................ ATTTTGTGGACGAGCAGGTGGTGGAGCAGCAA 4068252 28 100.0 32 ............................ GCACGTTGAGATCTGTGACCCGGCGGTAATCG 4068312 28 100.0 32 ............................ AGCAGCGTGCGAATCTCAGCCTCTGACAGCAC 4068372 28 100.0 32 ............................ TTGGCCACGTAAACCTGTTGGCCTTGACGGTT 4068432 28 100.0 32 ............................ CAGAGCAGGATCTTGCCGGTGGGTGGCGCAAC 4068492 28 100.0 32 ............................ CAATGGCATAGTGTCTTTTGCCGTTGCGCCAC 4068552 28 100.0 32 ............................ TTGACGTGAACGGGCGTATCCTTTGGCGCGTG 4068612 28 100.0 32 ............................ TTGAACCAAACACATGAGAATGCCATGATGGA 4068672 28 100.0 32 ............................ ATCACGGCAGGCCCGTCCTTGATCTGGCAAAA 4068732 28 100.0 32 ............................ GCGTTGTGAGTGCCGCGCAAGTTGAATGTGTG 4068792 28 100.0 32 ............................ AGATGGAAGTTGCAGACATCGGCTGGGCCATC 4068852 28 100.0 32 ............................ ATGAAATCCAGCGGGCTTCCCGCAGTTCTTGC 4068912 28 100.0 32 ............................ TTGTCCAAAGCAAGGCGAATTTTTCCGTTTTG 4068972 28 100.0 32 ............................ TTGAACATCGGGCGCGGGTACATGCGCTCGGA 4069032 28 100.0 32 ............................ ACGAGGCAATGAAGGAGCCGTGCGTGTCCGCT 4069092 28 100.0 32 ............................ ATATCCAAGGTCACGGGGGGTACGGCATGAGC 4069152 28 100.0 32 ............................ TATACGAAATATGACACATATTTTTACGCCGA 4069212 28 100.0 32 ............................ AACACCTCACGACCAATGATGATTTCGCCAAT 4069272 28 100.0 32 ............................ ACCCAGGTCGCTACCCTGGCCAACATCAACAA 4069332 28 100.0 32 ............................ GCCATTGGGCGACTATAGGAAATTGGTCTTTC 4069392 28 100.0 32 ............................ TGATGGTCAACCGCGAGGCCAAGGGTGCAAAG 4069452 28 100.0 32 ............................ AAGAATATTTGTACAGTGTGTACATCAAAATA 4069512 28 100.0 32 ............................ CAGTATTGGAATCGCAAGACTGCCTGGTGTTT 4069572 28 100.0 32 ............................ TGAATGAGATATTTAAGTCTTAAAAAATCATT 4069632 28 100.0 32 ............................ AAAGAAATGCAGGCGAATCCTGTTGATTTCTT 4069692 28 100.0 33 ............................ GCTCACAATGTGGGCGGTGATGCGATCCCAGTC 4069753 28 100.0 32 ............................ ACATTGTCAAAGCTGTTGCCCATTTCAGCTGC 4069813 28 100.0 32 ............................ ATCAAGACCGGCACCAACGCCGTATTCATCAA 4069873 28 100.0 32 ............................ ACCACCAAAACTGGATACGTCGTTCATGACGC 4069933 28 100.0 32 ............................ ACATGGTGCACGCCTATTTGCCCGCCCGGCGG 4069993 28 100.0 32 ............................ ACGTTGGGCCAGGCCCATATGCACCCGTTGAT 4070053 28 100.0 32 ............................ GCTGTGGGTAACGCTGAGTGCAGTGGGCACAC 4070113 28 100.0 32 ............................ ATTGGAAAGCAGCCCAATTGCAGGGCAGGCTT 4070173 28 100.0 32 ............................ AGCACGGTGTATTGCGCGGTGGCAAAGCCCAG 4070233 28 100.0 32 ............................ TAAAATTAATGTTTGTTGACGTGCGCAATAAT 4070293 28 100.0 32 ............................ TGCCGTAGAACCCACCGTGCTTAATTGGAAAT 4070353 28 100.0 32 ............................ TTGAGAAGGCAGGCCACCAGATCAACCGAAAA 4070413 28 100.0 32 ............................ ACCCATATCATTGAGCACGCGCAGGGCCTGGC 4070473 28 100.0 32 ............................ AATCTACAGCAATTTGCAGTAATCTCCTCTGA 4070533 28 100.0 32 ............................ AGGCACACAGGGCCATGTACTGGGGCAAGTCG 4070593 28 100.0 32 ............................ CATTCCAGGTGTGCAGCCGTCAGAGCAATCGA 4070653 28 100.0 32 ............................ ATTGAGCCTGACCAATAAGACATGCCTCTGAA 4070713 28 100.0 33 ............................ TCTGTGAATGTCATGGCGTGCGAAACGCGAACC 4070774 28 100.0 32 ............................ TAACGATGTAAGCACAGCCCCGGCGGCAAGGT 4070834 28 100.0 32 ............................ GGGCGCAGTTGGATCTGATGTGACCAGGGTGT 4070894 28 100.0 32 ............................ GCAGCAAACGGTGGTACATCGTTGATTTTTGT 4070954 28 100.0 32 ............................ ATTCGTTCCAGCAAGGTATTCGTCACGCTCAG 4071014 28 100.0 32 ............................ CGCCGAGCATGAGCGAGTCCGGCATAGCTGCA 4071074 28 100.0 32 ............................ AAACGGGATTGCTGCCCGTGCGTGGGCGACAA 4071134 28 100.0 32 ............................ GACCTCCGCGCCTGGCAGACACAAATGGGCTA 4071194 28 100.0 32 ............................ TGTCAGCGGAACACTCGCAATCCGGGGTGTCT 4071254 28 100.0 32 ............................ AGCGCCAGAGGGTGCCCCCAATAGTTCGAAGT 4071314 28 100.0 32 ............................ TTGACCCAAGCCCGTCGACGCACGAAGAGTTA 4071374 28 100.0 32 ............................ CGTGCAGCCGGTGAGGTGGGCTGGTGCCAGGT 4071434 28 100.0 32 ............................ AAGAACCCTACGCCACAAACACCAGCTCAGAC 4071494 28 100.0 33 ............................ GCCAAAAAAATCAGAAACAGGGCCGTAATTTGC 4071555 28 100.0 32 ............................ AATCAAAAAAGAGCGCATGAGCAGTCCACACT 4071615 28 100.0 32 ............................ AGACAAGGGCGTTACCGCTATGGCAACACGTC 4071675 28 100.0 32 ............................ GAATGTGCCACGGGTCCCCTGACCGGTCATTT 4071735 28 100.0 32 ............................ ACAGGGACGGCGGCTGGTTTACCAGCGACACC 4071795 28 100.0 32 ............................ GTTAAGCCGGTACTGTTGTAGCCCGTGCCACC 4071855 28 100.0 33 ............................ ACATGCGGCTGCCAAACTTCTGATCGTGCCTGA 4071916 28 100.0 33 ............................ TCTGCCATTGGTGCTGGGTGAGCACCGCATGTT 4071977 28 100.0 32 ............................ TGATCGTGCTGGACTCAGAATTCTGGCAGCAT 4072037 28 100.0 32 ............................ ACGACAAGGTGGAAGCCAAGAAGCAGGCCGAA 4072097 28 100.0 32 ............................ GGCACCGCGTGGCCATCGTGGTCGATGATGCG 4072157 28 100.0 32 ............................ GCCCGAAGGCGGCGAGACGTGAAGCTATGGGA 4072217 28 100.0 32 ............................ GCACATGCCAGCGCAACGGCCTTGCTGATCTC 4072277 28 100.0 32 ............................ TACCGAATTGACGGTGTGTGCGTTCCCAGTGT 4072337 28 100.0 32 ............................ GTTTCCAAGGCTCTCAGCCAGCGCTTTATTGA 4072397 28 100.0 32 ............................ CGATTTGCGCGTGCCCCTGGCTGGGCGTGCGC 4072457 28 100.0 32 ............................ AGCGGAAGGCTGATCGTCTCGCTGATGTTGCT 4072517 28 100.0 32 ............................ CGCTGGTGGACAAGCCCGCTGGGTGGCCACCA 4072577 28 100.0 32 ............................ TACACCGCCGCCATGAAGCGCGGAATTTATGA 4072637 28 100.0 32 ............................ ACAGGGGCAGGCCGTGATCGGCGGTATATTGC 4072697 28 100.0 33 ............................ AGCACATCAGCCAGTAGACCAACCGGTGCATAT 4072758 28 100.0 32 ............................ CATTTGTAGGTTTCTTTTCCGTTGACTTTTGC 4072818 28 100.0 32 ............................ AACAAAACAGGCAACTGATCCACGACCATATT 4072878 28 100.0 33 ............................ AGGCAGATATTCGCCGACGATGGGCACGTTCAT 4072939 28 100.0 33 ............................ GATCAGCGCATGGAAAATCCGCCATCTACGTTT 4073000 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 103 28 100.0 32 GTTCACTGCCGCATAGGCAGCTCAGAAA # Left flank : GCCGATCTGACCGCGATGATGGCCTCCCCGTGGCTGGCAGGCATGCGTGACCATGTGCAGGCCAGCGCTGTGTTGCCCGTGCCGACCACTGCCCGCTATCGCGTGGTGAGCCGTGTGCAGGCCAAAAGCAACCCGGATCGCCTGCGCCGCCGCCAAATGCGCCGCCATGGCATCGATGCCGCTGAGGCCTTGGCGCGTGTGCCCGACACCGCCGCCGAACGCCTGGATTTGCCTTATGTGCAACTGCGTAGCCTGAGTACCGTGCAGTCGTTCAAGCTGTTCATCCGGCATGGAGCCCTGCAAGATGCCGCAAGCCCTGGCGTGTTTGGGGCCTATGGGTTAAGCCCAACGGCGACTGTGCCCTGGTTTTGACCCTTTTTTCAGGCTGTAGGGAAAAGCCTTTGAAATCAATGGTTTGCTGAAACCCTTGGGAAGAAGGGTTTTTGCGAATTTTTGTCGAAAGCTGTTGAAATTCAGGAGCTTATGATGGGATGGGGATA # Right flank : AGCCACTGTCTGCCTTCTTGGTTCACATGTCGATCACCAGCCACCATACCTCGAAATGACACCCAAAGCGAGGTGCTTTGAGTGTCATACCCTGTGTCATCCTGGTCACCTCAATAGCTTGGCCCAGTTCGCCCGACCCAAGTGGGGATCACAATCTCTGTTTTTCGGGATTGCTTCATGTCGTCTCCTTTCAATTCGATGGGTTAAAGAGCGGAGAATCTGTTTCCAACTTTGTATACGTGACCGAGGAAACAGAAAAATCGCCACGGCCTGATTGCCAGGCTCAGTGATGCCTTGCAGCAGGACACTAAAAAACCCCGACTTGCGGGGCTTTGTGGTGTTGGTTGAAGGCCGGTTTTTCAAAACTGCCGAAATTGCGCTCTGTCGAACCGCTGACGATCCCAACCAAGTTGCCGTCTCAGTCTGCTTTGGGCCTGTGCAGGGTCATGGTCAAATGCACGCCAAGCGTCACAGTCACTGGTGTACCGGTATTCCCAACC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //