Array 1 1476996-1476165 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP006957.2 Mannheimia haemolytica USDA-ARS-USMARC-184 chromosome, complete genome		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                      	Insertion/Deletion
==========	======	======	======	================================	=====================================	==================
   1476995	    32	 100.0	    33	................................	TTCATCAACTGTATACCCTTGTACTTGGTGGTC    	
   1476930	    32	 100.0	    34	................................	TCCGCTCCTTTACGGTAAATGACGTCCGCAATCG   	
   1476864	    32	 100.0	    33	................................	ATTGCATAAACGAGCGTGGGATAACCTCTCCTC    	
   1476799	    32	 100.0	    35	................................	CAGCCTTTGGTGCTTAAAACTCGGTTAAGTACGCT  	
   1476732	    32	 100.0	    37	................................	ATTAAATAGAGAATAGGGCGAGCCAACCACGAAACGA	
   1476663	    32	 100.0	    34	................................	TCCGCCCTCTCGACATTGAGCCTGTACAATCCTT   	
   1476597	    32	 100.0	    34	................................	CCCTTTGTCTGTGGCGTTGTTTGTTTTGATGTGT   	
   1476531	    32	 100.0	    35	................................	CTTATCACGGGAGCAAAGAGATTGGTACAGGTTTA  	
   1476464	    32	 100.0	    35	................................	CCGCTGTGGTGTTTAGTCCGTGATTTAAAAAGATA  	
   1476397	    32	 100.0	    33	................................	TTTTCAGCAGCCGCTTTCCAACGCCGTGCCGTG    	
   1476332	    32	 100.0	    36	................................	TTTCTGAAAGAAAAATGATTTTCTGGGCAAGCAATG 	
   1476264	    32	 100.0	    36	................................	CCCCCGTGATTGTATTACCACTAATTGTCGTCCCTG 	
   1476196	    32	  96.9	     0	.......................T........	|                                    	
==========	======	======	======	================================	=====================================	==================
        13	    32	  99.8	    35	GCAGCCACCTACGCGTGGCTGTGAATTGAAAC	                                     	       

# Left flank :   TGAGGAATTAGCAACTATGCTGATGTTGATTACCTACGACATTTCATTTGATGACCCCGAAGGGCAGGCTCGCCTACGCCGTATTGCTAAGCATTGTTTGGATTATGGTGTGCGGGCGCAATATTCTGTGTTTGAGTGTGATGTTACTCCTGCTCAGTGGGTAACATTGAAAAATAAATTATTGGCAACTTACAACCCAGACTGTGATAGTTTGCGCTTTTACCATTTAGGCAGTAAATGGAGGAATAAAGTTGAGCACCATGGCGCAAAACCTTCAGTGGATATTTTTAAAGATACGCTGATTTTATAAATCGCTAGCCTGTAGTTCTCATAAAAATGTAGCAAGGTTAGCGAATCTATATTGTTCTTTAATAATCAAGGAATTAGAAAAAATAAGGCATAGTATATTGGCGATATGCTATACTTTATCCACTCTCTACAAAACGTTAGCGAATAAAGGGCTAAAAAGCCTGATATTTCAATACGTTATCTTGTAAGGA
# Right flank :  GGTGTACCCACAAATTCTATGTTTTCGCCATTGGCTGCTACCTTCGCATCAATATATATTGAAATATCAATGGCAAATTTGTATGTTGTTAATTAGACTGATTGCATCTGCTATGTATCATAGTAATGACGAAAATATTCTATTTTGCAAAAAATAATCAGAAATTACCCGCTTGTTCGAACTGAGTTTTTGTTTTCTAAGATGTGAAATGATACACTTTAGATAGTTTTAAAATATAGAGACAGTAAGATGAGTAGTACGGAATTATTAGTGAATGTTACCCCAAGCGAAACAAGGGTAGCGTTGGTAGAAAACGGAATATTGAAAGAATTACATATTGAGCGGGAAGCTAAACGCGGGATTGTTGGTAATATTTATAAGGGAAGGGTGACAAGGGTATTACCAGGTATGCAATCTGCTTTTGTGGATATCGGCTTGGAGAAGGCTGCTTTTTTGCACGCTTCTGACATCGTTTCGCATACGGAATGTGTTGATGAAAA

# Questionable array : NO	 Score: 9.25
# 	Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GCAGCCACCTACGCGTGGCTGTGAATTGAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         R Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     R [6,8] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GCAGCCACCTCCGCGTGGCTGTGAGTTGAAAC with 94% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-2.00,-1.40] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [1-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.37,9.78   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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