Array 1 95899-90168 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGSNN010000005.1 Acinetobacter nosocomialis strain AC1781 AC1781_contig_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 95898 29 96.6 31 ............................A AAGCATTTATACAAGTTCTATAAGTCATCTG 95838 29 96.6 31 ............................A AGTCCTAGCTGTACGCCTTTATTTTCTCAAG 95778 29 96.6 31 ............................A ACATCTCCTGTCTTTGTTTTGCCTTTCTTTC 95718 29 100.0 31 ............................. TGATAGGTTGAGGAATTTCACCATTCTTAAT 95658 29 96.6 31 ............................A GAGTGCGTTTTCTCTCTTAAAGTTGAAGGAA 95598 29 100.0 31 ............................. ACCTCACCATCACGGCACTTTCCGATGATGA 95538 29 100.0 31 ............................. GTGTGTTTGCCTAACAGTTCTGTTGCTCTTA 95478 29 100.0 31 ............................. CCACCGCCACCACAATCATCTTGGATGGGTT 95418 29 100.0 31 ............................. CTGTGATGTCTCGCGTTGTTTCATATTTATT 95358 29 96.6 31 ............................C ACGATTCAACAGTTTCTAAAGACTCCACCAG 95298 29 100.0 31 ............................. GTTGAGTCCGACCACAACATTTGCTTTTACG 95238 29 100.0 31 ............................. CACTGTAATTTGGGTCATTTGCTTTGTTGAT 95178 29 100.0 31 ............................. GTTGAGTCCGACCACAACATTTGCTTTTACG 95118 29 100.0 31 ............................. CCCATTCCGTTGTAGTAGCAGATGGCTCTAC 95058 29 96.6 31 ............................A TTAGAAATCGCCCCCACTTAATACCGACTTC 94998 29 100.0 31 ............................. TCACCATTTACGGTTTTAGCTTCAAACAAAG 94938 29 96.6 31 ............................A GAGACTTCTGTTATTTTTATTGATGAAGTCC 94878 29 96.6 31 ............................A ACAGTCGAAAGTTCAGCAGCTTTTTCAACTA 94818 29 100.0 31 ............................. CTACTTCTTGATCGATTGCCTTAACTTCCTC 94758 29 96.6 31 ............................A AAGTATTCATAGGAAAGGCGCACTGACGGAC 94698 29 96.6 31 ............................A TTAACTGATGCAAGCGGACAGATTATTGCTC 94638 29 100.0 31 ............................. AGAGGATCGTCGTTTTTATTCAATCGCTGGG 94578 29 100.0 31 ............................. GTCTAGATGCTTGGGCGGTGGCTAATTGTTT 94518 29 100.0 31 ............................. AGTACTTCAGTTCTATATTTTAAGACTTCTT 94458 29 96.6 31 ............................A TACTGAAGCTTCATTGCTTCAGTACCATGAG 94398 29 100.0 31 ............................. ACTACCAAGAAGTAACAAACTAAATAGAAGA 94338 29 100.0 31 ............................. GAGCAATATGCTGATTTGATGCATCCTGAGA 94278 29 96.6 31 ............................A TGGCAATACCTTTAATTAGCTTGGTTGGAAC 94218 29 96.6 31 ............................A ATGGCCTCAATTAACTGTGTTACAGCCATAA 94158 29 96.6 31 ............................A ACTGATCCTGCTGATCCACGTTTGCAATATT 94098 29 100.0 31 ............................. TGATCGGCTGTAGATTTTTATTGATCAGAAT 94038 29 100.0 31 ............................. CAGCAAAGCCAATGCTTGCGAGAACGTCTTT 93978 29 100.0 31 ............................. TGAGCCATGTCACCAGACGGCGACAAGATCA 93918 29 100.0 31 ............................. AGCGTTGTCGATGTGTGGGTAAAATCGAACC 93858 29 93.1 31 ..........T.................A CCAGTAGGCACTAAACGAGCATTACGCTGGC 93798 29 96.6 31 ............................A CCAGCCATCTTTTCGTTCAAAGTCTGGCAAC 93738 29 89.7 31 ...AC.......................A CGTAGTAATGAGCGCTACGGCAGTCCACTTA 93678 29 89.7 31 ...AC.......................A TTCCGCACGTTTGGCTTCATAGTCACGAATG 93618 29 89.7 31 ...AC.......................A TGAAATTTGAAATTTTTTAGATATTAATTTT 93558 29 93.1 31 ...AC........................ TGGAACAATTTATGTTCAAGCTCGTTAATTT 93498 29 93.1 31 ...AC........................ CAAGAGGTCGCGGTACAATGGCTATGGACGA 93438 29 93.1 31 ...AC........................ AAAGGGAAAATTGTTTTTCAGCTTCGGTACC 93378 29 93.1 31 ...AC........................ CAAGTGAAGCGTGGGATGGTTTTCCATCTGA 93318 29 93.1 31 ...AC........................ CAATAATTGCACGCAAAAGTGCATCATTATT 93258 29 86.2 31 ...AC.......CC............... TCCCAGCTAAAATAATTCTGCGTTAGTTTGT 93198 29 79.3 31 ...AC.......CC......C.......A CGGAAGACCGCCACCAACAGCCGAAGCAGCA 93138 29 89.7 31 ...GC.......G................ GTTTTGCGCGTAGTGCGATTTGTTTTGCATT 93078 29 89.7 31 ...GC.......................G CTAATCAAAAATTACGCCGTGCTACTGGTGA 93018 29 79.3 31 ...GC......TCC..............A CTTCAATTGATACTGGCTTTGTAGTTTTAAT 92958 29 86.2 31 T..GC.......G................ TAAATATAAAAATGGGTGTGCCACTTTTTCA 92898 29 89.7 31 ..C.G.............A.......... TCCCTGTGATTGAAGTTAAATGCGAATTATC 92838 29 93.1 31 ....G.......................A TTGGCTGGTGTTACATGGTCACGCGATATTG 92778 29 93.1 31 ....G.......................C TAAAGGCTGGACACGAGGGGCATAACTATGT 92718 29 82.8 31 ...AC.......CC..............A CCAGCTCGCAGCCAACCTGAAGCTGGAGCTT 92658 29 86.2 31 ...GC.......G...............A TGTAGTCCGCAATCGAACCCATAACCGCTTT 92598 29 89.7 31 ....G.......CC............... GATTGCTCAGGTAAAAATACTGTTTCAGAGC 92538 29 89.7 31 ....G.......CC............... ATTTGAATTAATTAAGTTTCAACGTTCTAAC 92478 29 86.2 31 ...GC.......G...............A ACTATTACGACAACATCAACCAGCAGCAAGA 92418 29 89.7 31 ...GC.......................A AAACCAATAATAACTGAGTCACGACAAAATT 92358 29 82.8 31 ...GC.......CC..............A TACGTCAAAACCATGAGTTTTTCTATCCTAA 92298 29 82.8 31 ...GC....T..TC............... CGCCCCATTCCATCCAAACGCGATTTAAGTA 92238 29 93.1 31 ....G.......................A TTTTTATTCCAAGGGCTTTTGCTTCTTGTGA 92178 29 89.7 31 ...GC......T................. TCAAATGATTTAATGAGCTTGTAGCCATTTT 92118 29 86.2 31 ...GC.......T...............A CGTCTTCTAATGATGGACTCTAATCCAATAT 92058 29 79.3 31 A..GG.......TC..............A TTAAAGCATTTTCATATGAGCCTTCCTCATT 91998 29 86.2 31 ....A......TCC............... TCGGATCAGTCCAGTCATCATCCTCGTCAAT 91938 29 79.3 31 T..GC.......CC..............G TATATTGATTCGTGGTCTTTGATGGCTTGCT 91878 29 89.7 31 ....A.......TC............... CCGCACCGCTAATCAAGGCTGGGTCTTTGGG 91818 29 86.2 30 ...G......A.............A...A GGCCAGCAGACGGCTCAAGCGCCTTTTCAC 91758 29 89.7 31 T..G........................A ATAACCACTACGATGTGTAGTTAATAATGGG 91698 29 72.4 31 ...GC.......CC..........ATG.G CAGTTAGGCATATTATTAGATAGTGATACGC 91638 29 89.7 31 T..GG........................ TGTAGCACTTATTGCTCTCACACTTATTTTT 91578 29 89.7 31 ....G..C..A.................. GTACGCTGAGTATTGATATTGACACTGGTGA 91518 29 89.7 31 ....G........C..............A TTGTTTGAATAATATGGACAATCCAGCCAAT 91458 29 89.7 31 ....G.......TC............... AACGCTTATTGGCAGTATCCAAAATTCAACA 91398 29 82.8 31 ...TC.......CC..............A CCGAAATTCAGACCCGCATTAATAACGTCTT 91338 29 93.1 30 ...G........................A AGTTGGTTGAACCATATTCTGATGATGTAA G [91312] 91278 29 82.8 31 ....G......TTC..............A CATTATCTTTGGTTCGCCAAATGAGTACTGC 91218 29 89.7 31 ...TC........C............... TATTTCGCATGTTGTATAAAGCTCTATGTGC 91158 29 86.2 31 ....G.......CC..............A CAACTTTTTAAATTTGAATTTATTTTAGCTC 91098 29 89.7 31 ....G...............C.......A TTTGTTGCACAGTAATGGTGTACTACGGGAT 91038 29 75.9 31 ...TC.A...T.TC..............A TTGAGCTGAAGGAGTAGTAAAACTTGCACAT 90978 29 86.2 31 ...TC........C..............C AAACATGAAAACAGAATACGTGCCTGATAAT 90918 29 82.8 31 ...GC.....A.T...............A CATGGGAGCTTCCATTTAGATGCGTTATCAA 90858 29 82.8 31 T..A........CC..............A TCACAGGAGGCAAATAAGGCCCCACGTATAG 90798 29 89.7 31 ...GC.......................A TAATGGTCATTTTGGTGATTGAATTATTAAT 90738 29 82.8 31 A..TG.......G...............A CATCTGTATGCAGATTTTGCTGCGTCCTTAC 90678 29 89.7 31 ...AC.......................A ATTACTCCGCCTGATCCTAGTGATCCTCCGG 90618 29 93.1 31 ...AC........................ TAAAGCGTATATATAAGCGTTTTGATAACCC 90558 29 96.6 31 ............................C TGAAACGCCCGCTATTTTTGCGAACTCAGTG 90498 29 100.0 31 ............................. GTATCATTTCACGTTCAGGAATATACTCAAT 90438 29 86.2 33 ...AC.......CC............... TCGGATCAGTCCAGTCATCACATTCTCGTCAAT 90376 29 89.7 31 T..A........G................ ATCATTGCGCGACAGAACGCATCAATTAATG 90316 29 82.8 31 ...GC.......CC..............A GATCTATGCAAGATTTATTGGTCTACATTAG 90256 29 89.7 31 ...TG.......................C AAGCTGATGCTTCCTTATAGTTACAGTCAGG 90196 29 82.8 0 ..CGC...................AT... | ========== ====== ====== ====== ============================= ================================= ================== 96 29 91.7 31 GTTCTTCATCGCATAGATGATTTAGAAAT # Left flank : ACGTTGGGCTAAAACGTTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAATTTATTCGTGATGAAGGAAAAAACTCTCACGATACTATTGCTGATATAGCCAACAGCTACCTTGATCATGGAAATTATATTGCCTATGGCTATGCGGCAGTTGCTTTAAATGGAATGGGAGTTAGCTTTGCCCTCCCTATTTTGCACGGTAAAACACGTCGTGGAGGCCTAGTTTTTGACCTAGCGGACCTAGTGAAAGATGCTTTTGTGATGCCACTCGCTTTTACATGTGCAGCAAAAGGATTAAATCAAAAAGAATTTCGAATGCAACTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGATATATGTAGTAAAATTAAATAAAATCATATATTTAATCTAAGTACCTCTTAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGGTTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : TTGAATCTTAAAAAGAAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAATCTTGGTGGAGATGGCGGGAGTTGAACAGAAATTCTAAACTATTGATTTTATATTTGGTTTTTCAATGTATAACATGTTGGTATAACTCATGTATAACATTTAATTTTGATTAAGTATGATTAACAACAGTTTCTTTTTTTTCAAGTCAGACTTCAGGATTTGAACTCAGGAGCTAATATAAATCATTTTGAACAACTCTCAAATGACTTTACCTAAGTTTCAAAAATAGCCATTGATCATAAAAACAACTAAGATGGAATAAAAAAGGGGGAAAGTCTATGTGCGCAAACTATGAACCTATTAGTAAAGACCGAGTACACCTACTAGATCTCTTCGAACCTACGTTCGACTATAAAGCCGATGTTTATCCAGGCTACGACTGCCCTCTTATTTTTTCTAAAGACGGCCACATTGAATGGCGACAAGTAAAGTTTGGCATGATTCCC # Questionable array : NO Score: 5.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.59, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.26, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [101-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 100988-102033 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGSNN010000005.1 Acinetobacter nosocomialis strain AC1781 AC1781_contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 100988 28 85.7 32 ...G........CC...........C.. TATTGACCCAGCCTCAGTTACACCCAAATTAA 101048 28 82.1 32 ...A.....T.CC............G.. TTTATCTAAGCAAAAGATCATCCCGAAATAAC 101108 28 78.6 32 ...CG......CCC.............G TTCAATTTTTTCAGTGATATTTTTGATATTCC 101168 28 89.3 32 ...GC......C................ GTTATTGTGCTCAGCAATAACGATGGAGGCGC 101228 28 85.7 31 ...AA......CG............... TATACATATTATTCAAGGCGGCAAGTTGTCT 101287 28 89.3 32 T..........C...C............ TGGGGTTTTAATATCTTGGATCGTCATTTTTT C [101290] 101348 28 82.1 32 ...C..T....CCC.............. ATCCATTCGAACTGGTCTTTCTTGAACAGATC 101408 28 92.9 32 ...A.......C................ CAGTGCGTCGGCTGCATTGTACTTGCCCAGCA 101468 28 100.0 32 ............................ TTTGAGGAAGAGGCAATGAAGCGACGACAAAG 101528 28 100.0 32 ............................ CATCGTTTCATGCGGGCCTTAGCAAGCGCTGA 101588 28 85.7 32 ...CG....T.C................ ATATCACGCGCCATTGCAAGTTTTCTACCGAT 101648 28 82.1 32 ...AC......CCC.............. GCAGCATCAAACGAGATATTGGCTAACATATT 101708 28 78.6 32 ...G......ACCC...........C.. CAAATAGTTTTAGCTATCTGAGCATTTAATTT 101768 28 89.3 31 ...CG......C................ AAAAGAACCCTGGCTTTAATAGTGTTTGCGA 101827 28 89.3 32 ...A........TC.............. TTTTATTAAAGGTTTGCATTACAATTTTGACC 101887 28 89.3 32 ...A...........A........C... TAGTCCTTGGAGATCATCAGCATTTAGCTCCA 101947 28 92.9 32 ...G.......C................ AAGGTTTATGTAACATTTAACTGTTACGGTCA 102007 27 89.3 0 ...G.......C............-... | ========== ====== ====== ====== ============================ ================================ ================== 18 28 87.9 32 GTTTTTCATCGTATAGATGATTTAGAAA # Left flank : CTTTAAAAATAGAAGCCGTTTTACCTGCATTTGCCTGATAATCGGTTGGAATAAGGAAGTCCTCATTTAATAAAGTTCGAGCACTGAGATAAGGTAAATCAAGTGCTTGTTGTTTACTTAAACGAATTCCACCTTTTTCAATATTGGAATTAATCGTCTTTAAACTAAAGTGTACCGATTCTTCTAAAGCATTTATAAAAATATCAGTTTGTGGTTCAGGCATTATCTTCCCCGTTTTTGTTATCTAGCCAATTTTTAACATATTATTTGAAAAATGAAAGTATTGAAGGAGAGAGCTGCGACAAATTAAGTCGTAAAGACAATTGGATGAAAATATTATATGCTTCACAAATTTAGCCTAAGACGATTAGGTTATATTTTTAGGAAATTAGAAAAATTAATATAATTCAATAGATTATATGGTTCTTCTATTTTGAAGGTTTTTAATTCATTAAAACTTTATATTATTGTTTTTAAGAGTTTTGTTTTTACTTAGCTCT # Right flank : AGAGTTTCTTTCAAAATTTAAGACGACGTATTTTGTCGTTAAAAGGCCGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAAGATTATATTTTTATTATATTTAAACTTTAACAAAAAACTATGCATGTCATTCTCATCTCTGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGATCGATTTTGGATAGCTATGCTATTCGTACGGGACATTCGTCTTGGCAAGCACCAATGACAATGGAAGGTTTAAAAGAAATACGTAGCGCATTAAAAAAAGTAGCCACTCGACAAACTGCGGTAGCCGCTTACATTAATTTTGGTGTACGAAGAATGAAGCTGGCTTGGGTTGTAGGAGCAAAACATAAATTTGCACACGATGGTGCATATCCAGTTGCATCGACCAAAAAACAACAAAAACTACTAATGCTAGATGAATGGGTCAAAGTAAGTAGCTTGTTGGCAGGTGCAGCAGGGGACATGCATGATATTGGTAAGGC # Questionable array : NO Score: 4.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.40, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.18, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTCATCGTATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: F [matched GTTTTTCATCGTATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [26-25] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //