Array 1 6530-9110 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAALNB010000083.1 Clostridium perfringens strain CP-12 83, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 6530 29 100.0 36 ............................. TTTTTCTAAAATGTTAGAAGCAAATTCTTTACTAAC 6595 29 100.0 36 ............................. AATTTATTAGTTATTTGAAGAAAACAAGCTTTTTTT 6660 29 100.0 36 ............................. ATCAATATATCTATGATTCTCTAACTGGTTCCAACG 6725 29 100.0 36 ............................. TCTTGGATAGTGCTCTTAAAGTTTGAACCACCATTT 6790 29 100.0 36 ............................. CAAGAATTATGTAGACTTGGCTTTCTTCTAAAAAAT 6855 29 100.0 36 ............................. TATCAACCCTGTTATACTTTTGTGCAGTGTAATAAA 6920 29 100.0 37 ............................. TCGGAATGTTTTGCCAATAGTCATTAATTCCACCTTC 6986 29 100.0 36 ............................. TATATTAGAGATGTTGATTTAACTTCTAAATTTAAA 7051 29 100.0 36 ............................. TGTGCACCTCTTCATCGAACATATCATATATAACAC 7116 29 100.0 37 ............................. GGAGCTACTATTAAAGATATCCTAAAAGGAAATTTAC 7182 29 100.0 36 ............................. GTTGGAACGCCAGTAAGAGCTAGTAAAAGTGGAACT 7247 29 100.0 37 ............................. TATTATTTGTAGTACCTTTTTCATTTACTGTTTGGAA 7313 29 100.0 36 ............................. TTTTAATTAGTAGCTGCATTTTGCAGCTACTATAAA 7378 29 100.0 37 ............................. GTCCCTTCGTGGACATAAATTGCATATTCTACATTAG 7444 29 100.0 36 ............................. AAAACATCTGCAAAGCATTCTAAACTTTCAGCCATT 7509 29 100.0 36 ............................. TCTGCATTTGCTATAGCTTCAGTTTTTGCTAAATCT 7574 29 100.0 37 ............................. GTTCCAACATTCCATTCATCAACTTCAAAATCACAAA 7640 29 100.0 37 ............................. TTTTGTGTAAAAACTTTATTATTAATAACTTTAAAAG 7706 29 100.0 36 ............................. GTCTTTTAATTTATCCCAATTGGATTTAACTTCTCC 7771 29 100.0 37 ............................. ATAGAATTAAACGCTGCTAGAACATTTAAAATAGTTC 7837 29 100.0 36 ............................. TGCAAAGTGGTAGAGAATTTGTTCATCAGGAATTAC 7902 29 100.0 37 ............................. CAGGAAAAAGCCAATTAAAATAGCCAAGCCAATCAGA 7968 29 100.0 35 ............................. CGGAATAGCACCAACCTGTTCACCCCCAACAATAG 8032 29 100.0 38 ............................. CTTTTTAAGCTTTGCAAGAAGTAAGCAGAACAACAATT 8099 29 100.0 36 ............................. TATAGAGCTTAGATATAATGGTACTCCAGTTAATTT 8164 29 100.0 37 ............................. TTGTACTGACAAGAAACTGTAACACCTTCATCACCTA 8230 29 100.0 36 ............................. GTACTATTACCAGTTGTACCTGACTTAGCTATTACT 8295 29 100.0 37 ............................. TTGTCTGAACGAATATCTATGTTATAAACTTTATTAC 8361 29 100.0 37 ............................. TACAAAATAAAAAAGCACCAGGAACTTTAATTAATTC 8427 29 100.0 37 ............................. CCCCAACGGTTTCTAAATGTATTATCATTCTCTCCGG 8493 29 100.0 36 ............................. TTAAAATCATTAAAAGAACTTAAAACTTTATATTTA 8558 29 96.6 36 ................T............ TTATTTTAGCTGTAATTAATTCTAAGTCATCTTCAT 8623 29 100.0 37 ............................. TAGTGATTACATAAAGTATTTATAATATCTATACCAG 8689 29 100.0 36 ............................. TTAGGATTCTGGACAAATCAAGATATATTAAGATAT 8754 29 100.0 37 ............................. TTAAAAATAATCTTGCTCCCATTAGAAAACTTGATCT 8820 29 100.0 36 ............................. GTTAAAGTTGCTTTATCAAATTTCAATCCTCTAAGA 8885 29 100.0 36 ............................. CTGAGTAAAATTAGCTTGTCTAGCAGGTTTCTTATC 8950 29 100.0 38 ............................. TTAATATAGTTGGTAAATTAGTAGCTATAGCCTGAATT 9017 29 96.6 36 A............................ AATGTAATTAAAGGGATAAAAGAAGGACAAACTATT 9082 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 40 29 99.8 36 GTTTTATATTAACTATGAGGAATGTAAAT # Left flank : AACTTAGAAATATAATATCTTTTGATATAATACCTCAATGTATTTATGAGAAAAATGAATCAGAAATTGAAAGCTTACTTGAAATTATAAATGATGAAAAAACAGATAAAATAAATAGAATAAAATCCATAGATAAAATAAAAAGTTTTACAGTATCAGTTGGGCAATATGATATTGAACTTTTAAAAAATAAACTTATTATGGAGTTAGAAGTAGGAAAGTATGAAAGAATTCCAGTATATAAATGCAATTATTCAGAGTTAGGATTTACTAGAAACACTAAAGAAGATGTATATGATAATTTCATATAAAACTAATTTTGCAGTAGATCTATTTTCTTATAATACTAGCTGTAACCAAGTAATATCAATGGTTAGAAGGAGATTTTTATTGATACATTAAAACATTACTGATGGTCTACTGCAAAATTTTAATATTTATGATAAAATTAACAATAGAGAATGAGTCTATTACTAGCTTTCAGCATTTTGAAATTTGGG # Right flank : ACAACAATATTAGTAGTTATATTATC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 503-17 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAALNB010000122.1 Clostridium perfringens strain CP-12 122, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 502 29 100.0 36 ............................. ATTTAAGTAATGCAGGTAGAGAAAGTGGTAAAAAAC 437 29 100.0 37 ............................. GGAAGTAATTCATATTCTATGAAAGAGAGAGAAGGAG 371 29 100.0 36 ............................. GACTTTATGGGATATAGCAAAAAGTATATTAAGCTT 306 29 100.0 36 ............................. TCTAAAACAGTAGTATCAGAAACAAACTCTTTCCAA 241 29 100.0 37 ............................. ATTATAATTTCTGTTTTAGGTACTTTGGGTGTTACTT 175 29 100.0 37 ............................. TAACCACGATACTGAGCAAAACTAGGAAAAGTATAAG 109 29 100.0 35 ............................. ACGAAATACAAACCAATTCCAACGAAATGATAAAA 45 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 8 29 100.0 36 GTTTTATATTAACTATGAGGAATGTAAAT # Left flank : TATAAAGCAAGCCAAAACATTGTTGGAAATATATCTTCATTAGGTTCACTTGCTATTGAAACAAAAAATTATAAGTTTAAAAGTATGATTTTAAGTTTGAAGATGCTTTATATATATATTGCATTTTCCATAGTTAATATAAAACTGTCAGCACCATGTAAAACTTTATATACAGCTTCTTTATTTACATTCCTCATAGTTAATATAAAACTTAGCTATTTTTCACCCTAAATAATTTCCATTTTTTTATTTACATTCCTCATATTTAATATAAAACTCTCCACTCAAGATAACTATTTTCATCATTTCGTAATTTACATTCCTCATAGTTAATATAAAACGCTCTAAAGCAAATAATATAACTACTAATATTGTTGTATTTACATTCCTCATAGTTAATATAAAACAGATGTTGCTATTGTTGGAAGTCCTACTGATGTTGGATTTACATTCCTCATAGTTAATATAAAACCTTAATCCAAAAATTTTATTTTATTAAA # Right flank : TGTGATAATAACTTCTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [18.3-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 531-887 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAALNB010000122.1 Clostridium perfringens strain CP-12 122, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 531 29 100.0 36 ............................. CCAACATCAGTAGGACTTCCAACAATAGCAACATCT 596 29 100.0 37 ............................. ACAACAATATTAGTAGTTATATTATTTGCTTTAGAGC 662 29 100.0 34 ............................. ACGAAATGATGAAAATAGTTATCTTGAGTGGAGA T [689] 726 29 96.6 37 ............A................ AAAAAAATGGAAATTATTTAGGGTGAAAAATAGCTAA 792 29 100.0 37 ............................. AAAGAAGCTGTATATAAAGTTTTACATGGTGCTGACA 858 29 86.2 0 .................GAA....C.... | T [885] ========== ====== ====== ====== ============================= ===================================== ================== 6 29 97.1 36 GTTTTATATTAACTATGAGGAATGTAAAT # Left flank : TAGTTAATATAAAACTTTTATCATTTCGTTGGAATTGGTTTGTATTTCGTATTTACATTCCTCATAGTTAATATAAAACCTTATACTTTTCCTAGTTTTGCTCAGTATCGTGGTTAATTTACATTCCTCATAGTTAATATAAAACAAGTAACACCCAAAGTACCTAAAACAGAAATTATAATATTTACATTCCTCATAGTTAATATAAAACTTGGAAAGAGTTTGTTTCTGATACTACTGTTTTAGAATTTACATTCCTCATAGTTAATATAAAACAAGCTTAATATACTTTTTGCTATATCCCATAAAGTCATTTACATTCCTCATAGTTAATATAAAACCTCCTTCTCTCTCTTTCATAGAATATGAATTACTTCCATTTACATTCCTCATAGTTAATATAAAACGTTTTTTACCACTTTCTCTACCTGCATTACTTAAATATTTACATTCCTCATAGTTAATATAAAACTTTAATAAAATAAAATTTTTGGATTAAG # Right flank : TATATATAAAGCATCTTCAAACTTAAAATCATACTTTTAAACTTATAATTTTTTGTTTCAATAGCAAGTGAACCTAATGAAGATATATTTCCAACAATGTTTTGGCTTGCTTTATATACAACATTGCCATTTCAAAGTGTAATAAATCTTTTAGTAGGCTATAACATAGAGAGTTTGTCATATTTAATACTTCCAACATATATGGTAACATTAAGCTTATTAAGTTATAAGGTACTTAAATTTAAACCTCAAAAAAATAAACAAGATAAGTAATTTTAGTTTTATAATAAGAATTAAAAAGTAAAATGGACATGATATCTGTCCATTTTTACTTAATTATTGATATATACTTATTAAATTTAGAACTTTGAATCTAATAATCTATGCATTTAGCAGTTTACATTTAATAGCTCCCTTGAAATTTCCTCGAATCTTTCATCAGATATACCAAGTTTTTTCTTAAATATATCATCATCAATTCTAGCAACAATAACCTCATT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [85.0-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //