Array 1 1239232-1239919 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP076386.1 Dickeya dadantii strain S3-1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1239232 28 100.0 32 ............................ AGCTCGCGGGATTTCAGGAACTCGCGGTTGGC 1239292 28 100.0 32 ............................ TCGACGCGCTGGTGATGGCGGCGGTGAATGAA 1239352 28 100.0 32 ............................ ACCAATGCCAAAATCTGATGTGTGGTCATTGT 1239412 28 100.0 32 ............................ TTGGCCATGAGCGCCGCCAACCCAAGAGTTAC 1239472 28 100.0 32 ............................ AGTGTAATCACCAACGTATTGATAGCCTGATT 1239532 28 100.0 32 ............................ ATTACGCACGGCTGCGAGTATCAGCAGCTCAA 1239592 28 100.0 32 ............................ GGTAAGGAAGCGCATAATGCGGCGTTTCAGCC 1239652 28 100.0 32 ............................ AATACCGCTAGATATTGCCGGGGTGTGATGTG 1239712 28 100.0 32 ............................ CAACTGGTCAAGCTCGCTACCCAGCGCATACG 1239772 28 100.0 32 ............................ AGAAATATCTGAAATGTCGGATAGCGTGTCAG 1239832 28 100.0 32 ............................ GCTTTCGCGATTCCTCACGAGACATACAGGTA 1239892 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 12 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTTAGAAA # Left flank : CGTCACGGAAACCCCGCCCATGGCGATATCGCACTTGCCGGACTGAAAATCCGGCATCAGGGTTTTCCAGCTGGTTTTTACCCACTCCACTTTCACGCTCAGGCTTTTAGCCAGCGATTGCGCCATAGCGATATCGATCCCTTCGTAATCGCCATCGGCGCGCAGCGACGTGTACGGCTTATAGTCGCCGGTGGTGCAAACCTTCAGCACCCCTTGTTCCTGCACTTGATCAAGATGAGACGCAGCGCTGGCGCCGCCGGCCAGCCCCAACAACAGAATGAGTGAAAACCGTTTTTTCATGAGAGTTCCTTGCAAGCCTGTCAGGCAAAAGCGCCACTGTAGCATGCCGTTTCTACGGCTACCGGTTTTGACCCTTTTTTTTCGCCTCGTTATAACTCATTGATTTTCAATGACGATAATGGCCGACGTTAAAAAAGGGTTTTCCAGGAAAAATCCCATTTTCCCTTTCAAAATCAGGTAATAGGCGATAAATTGCTACG # Right flank : ATCTATCCATTTGTTTTTCCGCTCTACGCCGTTATTCACTGCCGCACAGGCAGCGGTTGACCGGTTTGCTGGCGTTAAAAACTACGCTGAGGTGGGCGACTTCGCCGGATGCACGGCATGGATGCCGTGCAAGCCCATTCCGCGTTGGGAACGCGTAATGGGCGGTCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGTAGCGGCGTAGTTTAGCCTCCAGCCAGTGGTCAAGGAGAGGTGGCACCTGAACCTCTCCTTGTCGTGCGTGCAATGAAATGGCAGAGAAACGCTATTGTTTATCCCGCACGAAACATCCCACAGTGCTGACACTTCCGCTAATAAAGAACAACCCTGCTGTTTGTCCACAGCCCTCGCAACAGCGATTAACCGTTATTCCGCCGTCAGAGCCGACACCGCCCCTTTTCGCTTTTTGATGGCATAGCCGGCGGCCAGCGCCAGCAACCAGAACGGAATCAGCCACACGGAAATCTGAATGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1245392-1245123 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP076386.1 Dickeya dadantii strain S3-1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1245391 28 100.0 32 ............................ ATCGCCTAAACCCATTTGGGTAATTTGCAGTT 1245331 28 96.4 32 ...........T................ TTCAAACGAGATCGTGAAATCGCTGTTGGTGA 1245271 28 100.0 32 ............................ ATAACGCATACCTCCGTAAATTCCCTCGCCCA 1245211 28 96.4 32 ...........A................ ATCAACATCGACAATCCCCAGTTTTTTGGATT 1245151 27 82.1 0 ............AC.........-..CC | GG [1245128] ========== ====== ====== ====== ============================ ================================ ================== 5 28 95.0 32 GTTCACTGCCGCGTAGGCAGCTTAGAAA # Left flank : AGGAACTGGCGGCGCTGGAGCAGACCGGCTGGCTGAAAGGGCTGCGCGACTATACCGCCATCACCGAACCGCTGCCGGTGCCGGCGGGCGCGAAGCACCGCACGGTACGTCGGGTGCAGGTGAAAAGCAGCGCCGAGCGCTTGCGTCGCCGGGCGGTGAACAAAGGCCGGATGACCGTAGATGAGGCAGACGCGCGCATTCCCTATACGGTGGAAAAACGCACCTCGCTGCCGTATCTGCCGCTGCGAAGCCTTTCCAACGGACAAACGTTTCTGCTGTTCGTCGAACACGGCCCATTGCAGGATAAACCGGTCGCCGGGGCGTTCTCCAGCTACGGATTAAGCGCGGTCGCCACTATCCCCTGGTTTTAACCCTTTTTTTGCGGCCAGCGTTAACGTATTGATTTTTAATACCGCAATCTGGCCGCCAGAAAAAAGGGTTTTTTCGTCAAAATGACGATTTTTCTTTATAAATCAGGTGATAATAGAATATTCACTACA # Right flank : GGTTTTCTGGCGTTAAAAACTACGCTGAGGTGGGCGACTTCGCCGGATGCACGGCATGGATGCCGTGCAAGCCCATTCCGCGTCTGACAAAAACGCTGGGAGCGTTTTTGAACAGCGTTTACGCTGGCCCGAAGGGCGAGCCCCAGGGATGGGGCGAGTAAACGCGTAATGGGCGGTCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGTAGCGGCGTAGTTTAGCCTCCAGCCAGTGGTCAAGGAGAGGTGGCATTTGAACCTCTCCTTGTCGTGCGTGCGATGAAGTGGCAAGGAAGCACCATAGCTTATCCCGCACGAAACATCCCACAGTGCTGACATTTTCGCTAATAAAGAACAACTCGGCTGTTTGTCAACAGCCTCAGCCCCGCGGCGGGCTTCGCCGTTTCCCGCACAGGAAAAAATCCCCCAACCGTTACCGGCAGGGGGAAAAGGCGTAAAAAAGTGAAAGGAATAACTTACTGTACGGCGGCGAAG # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCGTAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-2] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 1254356-1254984 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP076386.1 Dickeya dadantii strain S3-1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1254356 28 100.0 32 ............................ GATACAAGCAAACAAAAACCCGCCACGAAATC 1254416 28 100.0 32 ............................ AACTTGCCTTTTCCAACTTCGGATCATGCTCA 1254476 28 100.0 32 ............................ TTGAACTGCTTTACGCCTTTACACGGATTCAT 1254536 28 100.0 32 ............................ TATCTGAGCGTCTATCAGCCCACATATATCCT 1254596 28 100.0 33 ............................ CGGCTGGAGTTCGACGCCAGCCACACCGATATC 1254657 28 100.0 32 ............................ TGTGGAACACCGGCGCACGGCTGAATGAGGCG 1254717 28 100.0 32 ............................ TTGTCGTGACCACTCCGACCGCGCAGAAAAGC 1254777 28 100.0 32 ............................ TGGCACGGATGCCGAGCTGGGTGGACGCGTTG 1254837 28 100.0 32 ............................ ATCAAAGACATTGAGCTGGCAATTATTGACCG 1254897 28 100.0 32 ............................ ATTTCTGCCGCGCCGGGGTGGGCCTCGGCGTA 1254957 28 67.9 0 ...........CAC.......A.CCCTC | ========== ====== ====== ====== ============================ ================================= ================== 11 28 97.1 32 GTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : GTTACCGAGGTGCCGGTGCCGAGCATCACCACGCTGGTATTAGCAATCGGGATATTCCAGTACAGCGACTGATTCCCTTCTTCGGTGACATATTCCACCCGTCCGCCATTCACCAAAATACGGCAATGCTGGAGGTAATAAATATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAATCCGACGGGCTGAATACGTTATCCATAAAACAGACTCTCTGCCGTAGCGATAGACAAACACCACCCGCGCAATAGAACGCAGGCTAATAATTAACTGAAAAATACGTAATTCACTGTAAAGTAACGAAAATCAGCCTATCACAGCCCAAACAGGAAAGTGAATGACGCCAGAAATACTTTTCCCGCCGCTATACCCTTTTTTTCAACCGTCTTTTTCGGTATTTAAAAATCAATAAGTTACAGGTAGCCGAGAAAAAAGGGTCTAACGGTGAAAATCGCCAATTGCGGGTCAGAATACAAAGGGTTAGAGTCAATTCGTTACG # Right flank : CCCCGGCCGGGGAGGGATACGTCGGTCAGAATGACGTCCAGTCGTCATTGGTACCGGCGGTGGCGGCGGCACGTTTTTCGGTTACGTTCGGGCGAGCAGAAGGCAAGGCGTGGGATAACGCCGCCGGCTGGCGGACCGGCGACGGTGCGCCGTTGCCGCCCTGCGGCGTCAGGCGGAAGGCGCTGACCGCTTCGGCCAGCAGCGACGCCTGCGATTGCAGCGACAGCGCGGCGGATGCCGACTCTTCCACCAGCGCCGCGTTCTGCTGGGTGGTGGTGTCGATTTGCCCGATCGCGATGTTGATCTGGCTGATGCCGTCGCTCTGCTCATGACTGGCCTGCGAGATCTCGTTGATGATGCTATGCACATCTTTAACGTGACCGGTTAAGCCATCCATGGTGGATTCGGCGGTATCCACCAGTTGCATCCCTTCCTGAATCTTGTCCACCGAATCGTCGATCAGTTCCTTGATCTCTTTGGCCGCCGTGGCGCTGCGCTGC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 2728333-2729581 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP076386.1 Dickeya dadantii strain S3-1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2728333 29 100.0 32 ............................. ATTGGCGATATTAACGACCTGGCTATCCAACG 2728394 29 100.0 32 ............................. CATAATGGCGGTATCATCGGGTCGTCTACGAC 2728455 29 100.0 32 ............................. TGGGGTACCGATATCATCGGTTTCTCGCTGAT 2728516 29 100.0 32 ............................. CAGCTCCGCCAGCGGCTGGACAAAGGGTACAG 2728577 29 100.0 32 ............................. CCGAAGTTGCATGACCAGGTGGCGGTGCTCGA 2728638 29 100.0 32 ............................. ACTTGCAGCGCCTTCTGAGACGCGACGGCCTC 2728699 29 100.0 32 ............................. TGATGCTGTCGCTGATTGACAGGTTCTTGTTC 2728760 29 100.0 32 ............................. TCCGCCGGCCTGACGATGCGGCTTTTTCTTAT 2728821 29 100.0 32 ............................. GTAATCGAAATTGGCTCTCCAGCCCCGGTCAT 2728882 29 100.0 32 ............................. GCCATATCTCTGACGGTGAAATATGCTTATAC 2728943 29 100.0 32 ............................. TTAATGACTGGCGCCCCGAATGGCCGGCGGCG 2729004 29 100.0 33 ............................. CCGTTATCAAACACGTTGCCGAAATGCTCGCAT 2729066 29 100.0 32 ............................. TATCTTACGGGCCGAATCTGCGATACGTGAAC 2729127 29 100.0 32 ............................. ATGGAGGAGATGGCTAAATCAGTCGGACGTCG 2729188 29 100.0 32 ............................. CATTTTTGGTCGAAAGAAAGACCTGGCGGACA 2729249 29 100.0 32 ............................. TCTATCGGCGACGGGTGGGGAAGGGCGTGGCA 2729310 29 100.0 31 ............................. TCTGTCTATTACGAGTGCGGCGGCGATACGA 2729370 29 100.0 32 ............................. GTTTTGGCTGTTTTTGGTGAGATTGAGCCAGA 2729431 29 100.0 32 ............................. CGACGACGAATTAATAGAGCTGACGGGTTATA 2729492 29 96.6 32 ..G.......................... GGGATATCGAAGGGTTTCGCGTCGTTGAGCCT 2729553 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 21 29 99.8 32 GTATTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTGATTGAGGACGTACTGGCCGCCGGTGAGATTGAGCCGCCACAGGCGCCGCCGGACGCGCAACCGCCCGCTATTCCCGAACCGACGCCGTTTGGCGACGCCGGGCACCGGGGGCATGGCGCATGAGTATGCTGGTGGTGGTGACGGAAAACGTACCGCCGCGCCTGCGTGGTAGGCTGGCGGTCTGGCTGCTGGAGGTGCGCGCCGGGGTGTACGTGGGCGACACCTCGCGCCGGGTACGGGAAATGATCTGGCAGCAGGTGGTGGAGCTGGCCGAGCAGGGCAATGTGGTGATGGCCTGGGCTACCAACACCGAATCCGGTTTTGAGTTCCAGACCTTCGGTGAAAACCGCCGGATGCCGGTGGACCTCGACGGTCTACGGTTAGTCTCATTTCACCCTGTTGAAAATCAGTGAGTTAGCGCTCTTTAACAACCGGGAAAAATCGGTGGAATTTTCCTGCCTTTAAAATGCCTTATAAAACAGGTATATAATTTTAGA # Right flank : GGTTACCTCTGCTGTTGCTTGTCGATCTCAGTTTTAACTTTATCTTTCGTTTGTTTCGCATAATCCACTCGTAACGGCTGCTGTTACCACTAAATCGTAAACTGAAAATCAACGCTTAATCGCAAACTGAAATTAACTAACTGAAAATGGAATACCCAAAAATGACAAATTCCATTCTTGATAGCCTGAGCCTTCCGGCTCCGGGGGAGATTGAGGCGGCTGTGCGTGGACAAAGGGAGCTTGCTGCCTATCTCTCCACGAAGATGGAAACACAAAAAATTTCGATTCAGGATGTGGATAACAACACTCGCCAGATCGAATTACCGACGTCGTCACTGACGCTGCTGATGTCGATTTTAGGTGAGCTGGCCATGGGTAATGCGGTTCAGGTTGTTCCCGTGCATGCTGAGTTAACAACGCAGGAAGCAGCCAATATTCTGAATGTTTCACGTCCTCACATGGTGAAACTTTTGGAAGATGGGAATCTGCCTTTTCATAAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 3027390-3028986 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP076386.1 Dickeya dadantii strain S3-1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3027390 29 100.0 32 ............................. GGTGGGAACGCGGAGAAGATTTCTGGGGCGGC 3027451 29 100.0 32 ............................. GTGTAATGCAGTAGTGATACAGTGGTATCAGT 3027512 29 100.0 32 ............................. ACATCGAACTACGGATTCGTGCGCGGGATTAT 3027573 29 100.0 33 ............................. GTGGATTGGCATACCTGGGTAACGCCTGTGAAC 3027635 29 96.6 32 ............................A GAGGGACGCCGATTGAACGAGCGCAAAGACAT 3027696 29 100.0 32 ............................. CCGGTCCTCGACATAACAACCAGTGCAACCCA 3027757 29 100.0 32 ............................. GAAAAAATCTTCTGAGCGCGGTCACTTTGCGC 3027818 29 100.0 32 ............................. GATAAAGTCAATATGGCTATTTTACTTGTCAT 3027879 29 100.0 32 ............................. GGCTGGTGGGGGCCGCGAGACACGATAGACCC 3027940 29 96.6 32 ..A.......................... CTGACATGGAAAACGTGGGTTACGCCTGCGCA 3028001 29 96.6 32 ..A.......................... GCCGTGGTGATGCGTGTGTTGAGCGCCGTTGC 3028062 29 96.6 32 ..A.......................... GACGAGCCGGAATACAACCGCGTCGCCACCTA 3028123 29 96.6 32 ..A.......................... GCAGTGCATAGATTCCTTGAGAAACTTTCAGG 3028184 29 96.6 32 ..A.......................... CATCTACGATATACGACGTGAAAACCTGCAAG 3028245 29 96.6 32 ..A.......................... TTGTGGAAGATTCGGATGCCGTTGCCGGCATC 3028306 29 100.0 33 ............................. CCGTTCCGCATACCGGATAGCTGGACCGTTGAC 3028368 29 100.0 10 ............................. ATGGTTTTCT Deletion [3028407] 3028407 29 86.2 32 .C..G...T....T............... CGCTCCCGACCGCTGGCAGAGAATACGCTTAA TG [3028415] 3028470 29 96.6 32 ..A.......................... TCCGTGAGGAGGAGGGTTATGAGCGCGTAGAT 3028531 29 96.6 32 ..A.......................... GAGGCCACGGGTCAGGCCAATACTGCACAGCG 3028592 29 100.0 32 ............................. TGGGCGTCCCTGTTCGTGCAGCAGGACAATGG 3028653 29 93.1 32 .G..........T................ CCGTCAATTGCATCTATGACCCGACTAACGAG 3028714 29 96.6 32 ..A.......................... GTCAGTGTGACATACGATGCCAGCATGACGCT 3028775 29 100.0 32 ............................. CCGTTGAGAACTCGGTATACCGCTTCGCGTGA 3028836 29 100.0 32 ............................. GAGCTTGTCCCATACGCCCTGTTCACAAATTG 3028897 29 93.1 32 ............T..T............. AGAAGAGAAGAAGTAAAAGATAAAACCCCTCT 3028958 29 93.1 0 ...........................GC | ========== ====== ====== ====== ============================= ================================= ================== 27 29 97.5 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTCTGAATAGAGGCGGAAAATCGGCAAGCGTCGAAGGCTGGTGTTGCACCAGCCTTTCTTTTTGCATTTTGCTCAACTGTTTGACGCGGTATTCCCATTTCAGCGCGGTGGAGCGATCGCCCGCCACGCAGTGATACACCAGCGTCAGCGGCCCTTTGCCGCGCAACGCGCGCGCCCCTTTCCCGGCCTGATGCTGCGTCAAACGCCGCGCCACGTCGGTGGTGATGCCGGTGTAAAGCCACCCGCTGCCGGTGCGCAGCAGGTACAGAAACCATGGGGTTTCACTGTTTTTCACGCCATTTCCTTTTCGTGGTTCAGCGCTTATCTTACGGTGATATCTCGATAAAGGCTGCCTGTGCTGCCGTATTCGTCGGTGGCTGGCGGTAGAAAAATTTGAGGTTTTTATTTATCAATAAGTTAGCGCTCTTTAACAACGTAAAAAAGTCGGTGGAATTTTAGAGGCTTTAAAAGTCATTATAAAACAAGTATATACTTTTAGA # Right flank : CCGCACAATCCGACGCGGTGATTCGTTCTTTCGTGTGATAAAATTCACATAATTGGTGATTTGTGTGCATTTAATTTCTTTTTGTTGTTAATAAAATCACATAACAGAGCGCGTTATCAGGGTGAAATGCCCGTAAACGCGATAGTGTGGCTAAGAACGGGAGTTTTGTATGAGTGATTTAACTGCGGCGGCGCAACGCGCGCTGGGACTGATGGATTTAACCACCCTGAATGACGACGATACCGATGAGAAGGTGATCGCCTTGTGCCGTCAGGCTAACAGCCCGGCGGGAAAAACCGCCGCTATTTGTATCTACCCGCGTTTTGTGCCGCTGGCGCGCAAGGTGCTGCGCGAGCAGGGTACGCCGGATGTCCGCATCGCGACCGTGACCAACTTCCCGCACGGTAACGACGACATTGATATCGCGCTGGCGGAAACCAATGCGGCTATCGCCTATGGCGCCGACGACGTAGACGTGGTGTTCCCCTATCGGGCGCTGA # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.06, 8:1, 9:0.73, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //