Array 1 388-54 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQJY01000009.1 Erwinia amylovora strain LA092 NODE_44_length_417_cov_1.71034, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 387 29 100.0 32 ............................. CTATGCAGAAGCGGAGGGCGGCGAGTGATGGA 326 29 100.0 32 ............................. AGCATCTCGGGAACTGTGTTTTTTGTATAAAA 265 29 100.0 32 ............................. AAGATGCTTTGACATTAATTATCTCCATAAAA 204 29 100.0 32 ............................. CAAGCGATCAACCTGTTTTTCAGTAGGTTTAA 143 29 100.0 32 ............................. GATTGCGCATGAGCACTGAAATTGTTCACAGC 82 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 100.0 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : CTATAGCAAAATGATAAATAATTTATCAA # Right flank : GACAAAAGACAACACCCCCCTTACCCCCCCACGGTGTTCCCCGCGTGAGCGGGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-14.00,-14.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 19461-19132 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQJY01000012.1 Erwinia amylovora strain LA092 NODE_4_length_223280_cov_52.6144, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 19460 28 100.0 32 ............................ TTTACGTTTGCGTTAACAGTAAGCTCTGCAAC 19400 28 100.0 32 ............................ ATCGCACCCCACTGATTGAAGAGCAGCACACT 19340 28 89.3 32 ......C..T..........T....... TAGCAATAAATTCGATAGACGCTGATTTGCGT 19280 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 19220 28 96.4 33 ..........................G. GCCAACGTTCACTGTCATTTAGCCACGCTTCCG 19159 28 78.6 0 .....A........G.....T...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 93.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGTGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCATCTGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGACTGGCGTTATAGGATGGTTTTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTTAATGCGATAAGCCAGTTAGCCCGGTAATGTAACG # Right flank : GGACTGAATGACTTCTCCCCTTGCCTGAAAGCATACTTTGCTTCACGGGCTTCTCATGCTGTGGACATTACGCTGACAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGCTAAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAAGTGGGGGTTTTTCACGGTTTTTTTACAATAAAAAAAGAAAGATCTTATATTTTTTTTATGCTCATAATTTGGCTGTTGAACCTGTTTTTAAGCTATTTGAAATTTTTTTACTCAATAATTTCCAGAACTTTCATTTTGAGTTAGCCACTTTTTTTCTCTCCTTTTTCTTCGATAATGGTTCCGCATGCAGTGCAATTGACGTTTTTTGTATTGAATGAAATGCAA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 31945-28924 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQJY01000012.1 Erwinia amylovora strain LA092 NODE_4_length_223280_cov_52.6144, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 31944 29 100.0 32 ............................. GCGGCGAAGAGACCGGAGCATGGGCTGTTGAA 31883 29 100.0 32 ............................. CCCATTTCCCTGATTTTCCTGGGATTATTTCT 31822 29 100.0 32 ............................. CGGGCATTAGCGGCTTTGAAACGAGAACTGGA 31761 29 100.0 32 ............................. CACGATCACACTGTCAGCTAGATTTTATGATG 31700 29 100.0 32 ............................. AATATCTAGTGTTTATGCGTGCCTTTTCTGGC 31639 29 100.0 32 ............................. CAACTGAGCAACTCCGCTTTGCCCCATACCAA 31578 29 100.0 32 ............................. CCATTCCCGAGCCATCGTCGCGACATCCAGGC 31517 29 100.0 32 ............................. AAAGAAACTACCCCCAACCCCCTAACGGGTGT 31456 29 100.0 32 ............................. CGACTATTCGGCGAACTGAAAGAGCCAACCGT 31395 29 100.0 32 ............................. ACGCCGCCATTCGGATCCGGGGAGGATTCGGA 31334 29 100.0 32 ............................. AATGCCTCATACCTGGCGGCCAGCCTTCAGCG 31273 29 100.0 32 ............................. TACCGCCAGTGGGCCATTGCATCCGGCATGGC 31212 29 100.0 32 ............................. TAACTACGTCAGCGGTGTCCAGCATGACGGAA 31151 29 100.0 32 ............................. TTGAGCACGGTAACCCTCGCCACCCGGCAGCT 31090 29 100.0 32 ............................. GAGAGCAACAACAAACTCCGACCGGAGAAACC 31029 29 100.0 32 ............................. TACACTGCAGGCAGTACGGGAATGGTTAACCC 30968 29 100.0 32 ............................. GTTTCGGCGAGCGCGTATATGGTCACGTTCAC 30907 29 100.0 32 ............................. ACTTGACTGTTTATGCAGTGGTTGTATTTCTT 30846 29 100.0 33 ............................. ATCGGAACGACTTAGATTAGCGTCCTTGCACAT 30784 29 100.0 32 ............................. TAACCGCAACCATCGCCGCGATAAATCCACTG 30723 29 100.0 32 ............................. GTTGATACGGCTGATTACAATAAAATGTCACT 30662 29 100.0 32 ............................. TAAAAAATGCCGCCATCGAATCAGCAAAATCG 30601 29 100.0 32 ............................. CTGCGGAGCGTCAAACGGGCGTTAACTCTCGA 30540 29 100.0 32 ............................. CCCTTCTGGTGTTTTGATTCTCCTAGGTGATT 30479 29 100.0 32 ............................. ATGGCCCGCTAAATGTTGACATGTCTGGTCGG 30418 29 96.6 32 ............................T AATGGACGAGATTTCACAGAAAATATCTGTTC 30357 29 100.0 32 ............................. GCTACTACGTGTACGCACAGCCGCTGGCCAGT 30296 29 100.0 32 ............................. CAGATGAGGCTGCAAATTCCAGGCACTTTTTA 30235 29 100.0 32 ............................. GATGGTCGTACCGATGTTTGCGAAAGATTCGC 30174 29 100.0 32 ............................. ACGGTCAGATGGTGGCGCTGGTTGCGCTGGCA 30113 29 100.0 32 ............................. CTGTTTATGAAAAATGCCAACAAACAGGAAGC 30052 29 100.0 33 ............................. ATTTTTCAGGAACGGGCCGACACGAAAATTTAT 29990 29 100.0 32 ............................. ATATTTACTAGCATTTCCCCATGCTGTATCAC 29929 29 100.0 32 ............................. CTGGAGCATGAGACGAAATCGGGGGTAGTGCT 29868 29 100.0 32 ............................. CCGGTTCAGGTTTGATAGGTTCTGCCTAACTC 29807 29 100.0 32 ............................. TTCGCATACGACAATCTCCCGGCACTGATTAA 29746 29 100.0 32 ............................. CGCGAGTACCCATCCATCCCCGCAGAGGCATT 29685 29 100.0 32 ............................. GCAGGGCCGGTTTACGTTGCGCAATCGGAGAT 29624 29 100.0 32 ............................. AGGGTGACGCAACGATTGTTGCAATTCCTAAC 29563 29 100.0 33 ............................. CACCAGTGTGTACATTCCAGACTCAGAAACCAC 29501 29 100.0 32 ............................. CCTCGAGGTGTTCTAAGCACTCCGGGGCTTTT 29440 29 100.0 32 ............................. GACGCTCAAATCAGTGGCGGCGAAACCCGACA 29379 29 100.0 32 ............................. CCAGAGGGGATTTAGCAAACGTCATTTCTGAC 29318 29 100.0 32 ............................. TCATCTGCGGGTCGGGTAGGCTGCTTACGGGT 29257 29 100.0 32 ............................. CAGCTATTCCCCGCATCGGTCAGTACTGCGCT 29196 29 100.0 32 ............................. TGGCCCACAATGGTAAAACCGGCGGCTTTCCA 29135 29 100.0 32 ............................. GCCAATGGATTCAGGATTGGAGCCAGAATTTA 29074 29 100.0 32 ............................. AAAAAAAGCCTAAAGCTCGAAAGAATAAAAAT 29013 29 96.6 32 .........A................... ATGATGGAGCTGATAGTTTTATTAGATGTCGA 28952 29 79.3 0 ...........AC..A.....C...T..A | ========== ====== ====== ====== ============================= ================================= ================== 50 29 99.5 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : ATTCCTCTGATCGAAACGGTGCTGGCTGCCGGAGAGATCTCCCCACCCCCACCCCCGCCGGATGCCCAGCCGGTTGCCATCCCTGAACCACAGTCTTTTGGCGATGTCGGGCACCGGAGTGCGTAATATGAGTATGCTGGTGGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGACGTTTCGCGCCGCGTGCGGGAAATGATTTGGCAGCAGCTTAATCAGCTTTACGAGAATGGCAATGTGGCGATGGTATGGGCCACTAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGCCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCCGTCTGACATGCAAACCGCGGCTTTTGACAGCAAAAAATCCGGTAGATTTTGACGGGTAAAAAAAGCCGTTATGGTTCAATGGTTTGTATCTAGA # Right flank : ATAATATGTTTAATGCCAGCCCGGCTTCGGTATTGCCTCGCCGGACTGAGCCTGGCTACATTACCGGTAAAAGAGGGTAACGCTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGCCTGGTCGAATATCGCCCTGGGTTCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTGAAACCAGCAACGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAACCCCTCTTTGGCTTGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 44367-40984 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQJY01000012.1 Erwinia amylovora strain LA092 NODE_4_length_223280_cov_52.6144, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 44366 29 100.0 32 ............................. CCAGATGTGGACCTGAACTCTGGTAGTCACCA 44305 29 100.0 32 ............................. TTGAGCACGGTAACCCTCGCCACCCGGCAGCT 44244 29 100.0 32 ............................. TTTTTGTACTGTGAGAAAACGCTGTCAGAGGA 44183 29 100.0 32 ............................. CCAGTTAGGATGTCTCTTTCATGATTTATATA 44122 29 100.0 32 ............................. CCCGAGCCCATGTGCTAGTGCCGGTAAGAAAA 44061 29 100.0 32 ............................. GCGTCCTGGCCATCGAGTGCGTATATCCATGT 44000 29 100.0 32 ............................. CAACCAGTTTCGTTAGTTGTTTCTGGGATTAA 43939 29 100.0 32 ............................. GTTGAAAATTGACCATTACAAGAAATTTAAAA 43878 29 96.6 32 ............................C TTTTACGAATATGTCTTGTATCCCGGCTCTGG 43817 29 100.0 32 ............................. GGAAAAATTATCGAGCTGGCAAATAATAAAGG 43756 29 100.0 32 ............................. GATAATGCGGAGTTTTCGGGCACGCTAGAGGC 43695 29 100.0 32 ............................. GTGCAGAGATGCCGATATTGACAGATCCAATT 43634 29 100.0 32 ............................. CGCGATTGAAAGGGCTGTGGTTTATCGTGATG 43573 29 100.0 32 ............................. TTCCCATACCTTCACGGCCCGACACTTTGCGA 43512 29 100.0 32 ............................. CGCTTAATCAGCTCAACGCAGCGAAGGACGCT 43451 29 100.0 32 ............................. TCGCGGCAAAGCGCCTTTTGCCGCTGTATGGC 43390 29 100.0 32 ............................. GTGTTCTTCATCTGTATCCACTTCACCCACGC 43329 29 100.0 32 ............................. CAGGGTGTGTGGCTCACGCGCTTTCATCACGT 43268 29 100.0 32 ............................. CATAACGCTTCTTTTCTTTGGTTCTTCTGTCA 43207 29 100.0 32 ............................. TTCCCGCGTTTCGTGGGATACCCCTTTTATGC 43146 29 100.0 32 ............................. CGAACCTATGCGGCATTAGCGGATGCCGCCGG 43085 29 100.0 32 ............................. GTGTTCCGCCTGGCTGGGAGAATGTGGATGGC 43024 29 100.0 32 ............................. CTGAAAATGAGTGGTGGGCAGCCGGGAGTTAG 42963 29 100.0 32 ............................. AACTTACGGTGGCCTGGCTTGAACTTCCGGAC 42902 29 100.0 32 ............................. CCGGGCGAATGCGGGGATTGCAGGGGCAATGG 42841 29 100.0 32 ............................. GTATTTATAAACGATTCATTAATACGCTTATA 42780 29 100.0 32 ............................. CAGCAACCGGTGGTATTTTTCCGGGTCGGTTA 42719 29 96.6 32 ............................C ATTACTGGTAGTAACTCAGCAGTATTCGGTAC 42658 29 100.0 32 ............................. TTCCCGCGTTTCGTGGGATACCCCTTTTATGC 42597 29 100.0 32 ............................. GGCACCGCCAATCTTCTGGCCCCAGTGATTAT 42536 29 100.0 32 ............................. GAGATAGCTAACATACTTAACTTATCGCCTAA 42475 29 100.0 32 ............................. GTGATAAGCGTACCCTGCAGACGGCAAATAAC 42414 29 100.0 32 ............................. CCAGCTCCAGTGCTACCGCAACGCCAGATTCA 42353 29 100.0 32 ............................. AGTAATTAATGATTCTGAAATCTCTCTTAATA 42292 29 100.0 32 ............................. TTTGGTGACAAAGGATGGGTGCGCGAGGAAAT 42231 29 100.0 32 ............................. AACGTAATCAGTGGGCTGATATGCACGGTCTG 42170 29 100.0 32 ............................. CCGCAGTGGTGTTGTGGTTCTTAGCAGGCCGA 42109 29 100.0 32 ............................. GGTGAGTGTTTAATACTTCCCCTTTGGAGGCA 42048 29 100.0 31 ............................. ACAAAAGACAACACCCCCTTACCCCCCCACG 41988 29 100.0 32 ............................. CAGGTATTTCGGATAGCCGGTTGTCTCGGCGG 41927 29 100.0 32 ............................. TGAACGAGCGCGAGGCACCTGACGGTGCAGAC 41866 29 100.0 32 ............................. GTGGTGACCTCTTTGTGGGCGGCGTTTCTGGG 41805 29 100.0 32 ............................. ACTGAAATTTAAAATCACCGCTAACCCGCCAG 41744 29 100.0 32 ............................. GGCGATGAGGGAGTACGCGGAGCGGCAGGGTA 41683 29 100.0 32 ............................. AAAAGCCAACCGCCCGCCCGTAATAAACCTGA 41622 29 100.0 32 ............................. GTTGCAGAGACTTAAAGATCGTCTGCTAGTTA 41561 29 100.0 32 ............................. TAAATGGTTGTCCGTTCTTGGCGCAGACGGCT 41500 29 100.0 32 ............................. TAAAGGAGCATGCTTATACAACTGACAAAATC 41439 29 96.6 32 ...........A................. CGCAATTTTTAGACAATGCAGAATTTTATTTT 41378 29 100.0 32 ............................. CCGCGAAAATCCGCAGTGAGCTGGCAATGAGC 41317 29 100.0 32 ............................. CCCAAAGGAACAACGAGAGCTATCCAAACCAA 41256 29 100.0 32 ............................. ACCAAAGGCGACCATCAGGTAGAACTGGCCTT 41195 29 93.1 32 .C...............A........... AGCTCGAATGCTACGCATCAGCACTGATTAAA 41134 29 96.6 32 .................A........... TGTCTCCAAGTTAGCAATTTAGTCTCTAAACC 41073 29 93.1 32 .............T...A........... TCATATGCGATTTTCAGCCTTTTAAGACCTTC 41012 29 86.2 0 ..........A.......A.A.....T.. | ========== ====== ====== ====== ============================= ================================ ================== 56 29 99.3 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TTCCGCTAAGCATTGGCAGAGAGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGTCCACGAAAAAGGCAGGGGCGGTTAACTCCCGGCCTTATTCGGGTGACTTCAACCCTTAAGGCGTCCGGTCGGTTGCTTAATAGCAACGATAATCAGCAAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCACTAGTATTGCCTTGATATAAGAGCGTGCGCGCAGCCTGTAAGTGCGAGCACGTAATGGTCGACAAAAATCAATCCGGTTTACAGGCCGGTTTTTTTCCGCCGCCACGCTGCCATTTCCGCTATATTCAAGAAGTTCACTTAGTCGATTACCCTTGTATTTGGCCGAGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAAAGTGGAAAAAAGTTGGTAGAATTGTAGGGGGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : CATGCGCTGACGAAGATGGCCTTATCACAGTCACCATCCGTAATTTGTGCCGGGAAGCGTCGACGTGACCACGATCGGCATTCTGCACCAAACCCGCCGACCATCGGCATTAAACAAGCGTGAAATTTACATCATATCATCATGGGGTTCCGCATAAGCAGGGTTAGCCTTTATTCACTACTTTCAACTGACCAGATATTTCAAATCATCTATTTTACGATAAATGCTGAGAACCATTGATATGTCAGAAGACCAAAGTCAATATGGCTGGGGATTTTTAAAAAGGGGCCGAAACCTTGAACTTATATAAATGATGGATAAATTAATGAATTTCAGGTTGATAATGGTTCTGATTATTATATTCACGTTGCTGCTGTTGTTTTTTTCTAATATCACGATGCTTAATTCAACTATCAATATCAGAATTTTTTTTAGATTAAAGTCATTATTTCCCCATTTATGGGGATAAACCTGGGCCAATGTCTTGAACCTAATGTTCC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //