Array 1 2654997-2658815 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034161.1 Epilithonimonas vandammei strain F5649 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 2654997 47 95.7 30 T..T........................................... TGTTGTCCCTTTCCACGCCCAATTTGGTAA 2655074 47 95.7 30 ...........................C.................A. TTTCCTCAATAATATCCCAAACACCGAATG 2655151 47 95.7 30 ...........................C.................A. TAAACTTAGGCGTAAAACTGAAGCTTCATT 2655228 47 95.7 30 ...........................C.................A. ATCTGTTCTTTCTTTTGTTGCGCCAGTATA 2655305 47 95.7 30 ...........................C.................A. ATTCCCCAATCAATCCATCTACCAACAATT 2655382 47 95.7 30 ...........................C.................A. CACTCGTGAGAAGTGCTGTCGATGATGATA 2655459 47 95.7 30 ...........................C.................A. AAACCTGCTGGAGATAGCAACGATGGGAAA 2655536 47 95.7 30 ...........................C.................A. GGATATATTATTATCTTTTGTTTTGGGAAA 2655613 47 95.7 30 ...........................C.................A. TTCTATCGTTCATGCCGATACTTTGGCTGT 2655690 47 95.7 30 ...........................C.................A. ATGGAATTAGCGCTGATATGTATTTAGATA 2655767 47 95.7 30 ...........................C.................A. ACAAACTCGCCATTTAGATAAGCATTGATT 2655844 47 95.7 30 ...........................C.................A. CCTCCCACCGATCCGCCGCTGGAACCGGAA 2655921 47 97.9 30 .............................................A. ATTTATCAGCACATAACGAGCGTAAGCGTA 2655998 47 97.9 30 .............................................A. ACAATCTACAGCTGATGTAGAGAAGGCTTC 2656075 47 97.9 30 .............................................A. TTTTCATCTTTTTTTGACTTTTTAAAAGTT 2656152 47 97.9 30 .............................................A. ATTTGAATGAAAAGGAAGTTGATGGTGCAA 2656229 47 97.9 30 .............................................A. AATGCAGATTTGGCAAGGTTAACGGTTGCT 2656306 47 97.9 30 .............................................A. ACTTACGGAAGCACCAAATAACAATCTCCA 2656383 46 93.6 30 ...........................C.............-...A. CTGCTTCCGCCTTCCCCCACAAGCAAAGTA 2656459 47 93.6 30 ....................G......C.................A. TAATAGCGCCATCTATTACGTGGATAACAG 2656536 47 95.7 30 ...........................C.................A. AAACCTGCTTGTTTGAACAGAAGCAAACCA 2656613 47 95.7 30 ...........................C.................A. GCTAAAAGATTTGAATTCAGAGTGGTTAGA 2656690 47 95.7 30 ...........................C.................A. ATGAACCGACTACCACATTGTCTAATCGCA 2656767 47 95.7 30 ...........................C.................A. CAACCAACGGCGGTTTAGATATCATTATAA 2656844 47 97.9 30 ...........................C................... AACACACTTTCGGGGCCGGAAACTCCATCG 2656921 47 100.0 30 ............................................... GCTTTCTTTTCAAAACCTAAAGAAATGAAA 2656998 47 100.0 30 ............................................... CAAGATAAGTAATTTAATTGTAATTTCCAA 2657075 47 100.0 30 ............................................... TTTTCTTCTGAAGTGCTTCCAATTGTTCCT 2657152 47 100.0 30 ............................................... ATAATGCGTTCAAATCTTTTAGATTATCGA 2657229 47 100.0 30 ............................................... GGACGTGGTGGTAAATTGAAAGGTCCATCA 2657306 47 100.0 30 ............................................... TTTAATCTGATTCTTTCTTCATTGTTACAA 2657383 47 100.0 30 ............................................... GTATCGATTTTGGTAACTTCTGCGAGTTTG 2657460 47 100.0 30 ............................................... TTAGAAGGATTTAAAGAATACGCTTATCTA 2657537 47 100.0 30 ............................................... TTAGGACTTTGCGAGATGCTCTCGCTTTAT 2657614 47 100.0 30 ............................................... GATTCTTTGAATGTTTACCGCTTAAAATAT 2657691 47 100.0 30 ............................................... TCTTTCCGCCTTATTCCCAACCGTCAGAAT 2657768 47 100.0 30 ............................................... TGCATTAGCATTAGCAGTAGCACTGTGGCA 2657845 47 100.0 30 ............................................... AGACTGTTCGATAGAACGCATTGAAGCAGT 2657922 47 100.0 30 ............................................... GGTAATTGCAATTTTAACAATCTTCCAGTT 2657999 47 100.0 30 ............................................... GGTGCGACCTCGTTTGTCGCATTCAGTGAT 2658076 47 100.0 30 ............................................... AACAAAGCTTTAGATTTCATTGCTTCGGTA 2658153 47 100.0 30 ............................................... AAAGATTCTTTTGTGAACTCTTTTCCTGCA 2658230 47 100.0 30 ............................................... TTATTCAACTTTCCATCATCGAGGTAATCA 2658307 47 100.0 30 ............................................... TTTGGATATGAATATTTTAACAGCTTCCGA 2658384 47 100.0 30 ............................................... TCTTTCCGCCTAATTCCGCATCGCCAGAAT 2658461 47 100.0 30 ............................................... AGCGGTTCATCAACTTTCAAATCGTGGAAT 2658538 47 100.0 30 ............................................... TTGAGTTGTACACAGATGGTAAATTATCAT 2658615 47 100.0 30 ............................................... ACCTCGTAGGAAGGCAAATAATGATAATTA 2658692 47 100.0 30 ............................................... AAGATGCAAAAATATCCATATTCCTAGACA 2658769 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 50 47 98.1 30 GTTGTGAATTGCTTTCAAAAATTATTATCTTCGTGATGAAGGACAGC # Left flank : AATAAAATATTTTTTTTACAACTGAGACAAAAAGGCACAGTATGTGATAGTATCCCATCAATCACACTAAAAAATAAAATTATGAGAAGTCTATTATGGTTAGTCGCTGCTATTTGTATTGTAGTATGGCTATTAGGAATGCTGGGCGTAGTACCAGGAATGAGTACAGGTTATCTGGTTCATATATTATTGGTAATCGCTGTTGTAGTGGTATTGTTTAATATTATCTCTGGCAGAAAACCTCTTGACTAAGTTTTCTTTCCACTGAAAAAATAAAAACAGCTTGTAAATATTTACAGGCTGTTTTTTATGTAAGTCAAGGCTGATTATGGATGTTATTAAAATTGGATTTAATTAAATAAAATGAAAAAAATAATACCGCAAAAAACAGTTTTCAATCATTTCAAGTTATTTTTAATGGCTAATAGTTAGCATTTATTTAAACATTACTACCTTCCTCACATGATATAACTTCCTTCCGCATCAAAACTTACAATCCA # Right flank : CCTCAAAAAATAATCTACTGGTTTTCAGTAGATTATTTTTGTTCTCAGGATTTAAAATTCAGAACAATTCGAGCTGTTGAAAGGTCGGTGGCGGTTCTTCTTTATTTCTGGCAAAAAAGATTTCGATGTCTCCAAACTGTTTATCGGTAATGCACATAATGGCAACCTTTCCGGCTTTCGGAAGCATAAATTTTACTCTTTTGATATGAACTTCTGCATTTTCGCGGCTCGGACAATGACGCACATACATCGAAAACTGGAATAAAGTAAATCCGTCATCAATCAAAGCTTTCCGGAAACGGTTTGCATCTTTCATATTCGCTTTCGTTTCGGTCGGGAGGTCATATAATACTAAAACCCACATAATTCGATATGCATTAAACCTTTCGGCGTTCATATTTTTAGTAAAATGAATAATGTAAAAAGTAAGATGGATTTCTTTTTATCATATAAGTTCAGGATAGGAAATCAGTCGTTTTTCTCCTGTATAGCATTTGTAA # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.73, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAAAATTATTATCTTCGTGATGAAGGACAGC # Alternate repeat : GTTGTGAATTGCTTTCAAAAATTATTACCTTCGTGATGAAGGACA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.89%AT] # Reference repeat match prediction: F [matched GTTGTGAATTGCTTTCAAAAATTATTATCTTCGTGATGAAGAACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-2.70,-2.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //