Array 1 928-165 **** Predicted by CRISPRDetect 2.4 *** >NZ_WTRC01000114.1 Escherichia coli strain 8378wH8 NODE_114_length_10023_cov_13.874, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 927 29 100.0 32 ............................. GTCACGACTGAAAAAAAACGCGTCACGCGCGC 866 29 96.6 32 ............................T CTAAAATAGAAATTATTCACGGGGATGCTAAT 805 29 100.0 32 ............................. TGGCAGATCGATTTTACCGCCAGAATGACAGG 744 29 100.0 32 ............................. ATTAAGGCGGACGAGGAAAAGGCAGACGTTAC 683 29 100.0 32 ............................. TTAGGCACAGAAAAAAGGCTACTCAGCGAACT 622 29 100.0 32 ............................. ATCAGGTAATCGAGACACCTGTCAGCACTCTC 561 29 96.6 32 ............................C CCAGCGCCAGACGGGAACACAATTTTAAAGCC 500 29 100.0 32 ............................. TTGTCGGGGATCTGTTCAAACTGACTCATTAG 439 29 100.0 34 ............................. GGGGCGCATTAACAGAGAGAAAAACGCATAGGCC 376 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 315 29 100.0 32 ............................. TCGCTATTGCCGGTAGTGTCGCTGATAGACTC 254 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 193 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================== ================== 13 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1531-99 **** Predicted by CRISPRDetect 2.4 *** >NZ_WTRC01000979.1 Escherichia coli strain 8378wH8 NODE_979_length_1628_cov_16.8621, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1530 29 100.0 32 ............................. AAATAGACGACCAGATAGCCGACCAGATTGGA 1469 29 100.0 32 ............................. TCTGTTAATCAGATTAAAGGTGCGGTAATTGA 1408 29 100.0 32 ............................. AGGCGCGGAACTCCTGGACGAACGCGCTCTGG 1347 29 100.0 32 ............................. ATCACCTTCGGCGCTTACGTCGCCGTCCGTGT 1286 29 100.0 32 ............................. GGGTATATCTTGTACGCGACTGATCCTGATTT 1225 29 100.0 32 ............................. GAGCGTAGAGATTCTCGAAACCGATCCGGACG 1164 29 100.0 32 ............................. GACGTTGCGCGCACTAAGAAAAACAGGTTCGA 1103 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 1042 29 100.0 32 ............................. TCATCGAAAACCAGCGGATCGAATGGGACGCC 981 29 100.0 32 ............................. AGACGGCGCGTAAAACTCATACGGCGACAAAT 920 29 100.0 32 ............................. AGACGGCGCGTAAAACTCATACGGCGACAAAT 859 29 100.0 32 ............................. CTCGCGGGCGTGGAATTTAACGAACGGTTACC 798 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 737 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 676 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 615 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 554 29 100.0 32 ............................. TTAAAACATTTTCCGAGCTTTGCGATTTATAT 493 29 100.0 32 ............................. TAAAAATCATCATGGAAAATCAACCCGGCGAC 432 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 371 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 310 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 249 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 188 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 127 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAG # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1171-898 **** Predicted by CRISPRDetect 2.4 *** >NZ_WTRC01001032.1 Escherichia coli strain 8378wH8 NODE_1032_length_1532_cov_1.56655, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1170 29 100.0 32 ............................. ATTAACGCGGCCCGCCTCTGCGTTGGCGTGAA 1109 29 100.0 32 ............................. CGCGTTTCTGGAACCGTAATTTGCTGCGGTAT 1048 29 100.0 32 ............................. CTATTGGCCTCACTGCCACCGCAGTTAATACT 987 29 100.0 32 ............................. GTGGTTACCTAGTTGCTATGTGTTCGTGACAA 926 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGACTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAG # Right flank : CGCCGAGCGTGGCGCGGATATAAAAAAGGCCCGCCGCAGCGAGCCTGTTTTCAATGAGTGCAAAATTCAATTATTCTTGAGTAACACTTAAACTCATCTCATTGAATGCAGCCATCCTGTAACCTGCCGGTGTAACACCAAAATAACTCCTGAATACGCTGATAAAATAAGATGTAAAATTATAGCCACACTGAGCAGCGATTCTGTTGATGGCGCAACGAGATTGATTCAACAGCATTGCTGCCATTCTCATTCTCTCTGTAAGCAACAACTCACTGAAACAGGTGCCTTCTTCTTTCAGTCTTTTTTTTAACAAACTTTCACTGATACATAACCGCGAAGACACATCTCTCAGAGTCCAGTTTGCTGCAATGTCCGTACGAAACAATGCACTAAGCCTGTCACTAATATTGCCAATACACGCGGTCAGAAACGACGAAAACATTTTCTCTGATGAGAAAAACGCCAGACACGAAAAGGAAAGCATTTCCGCTAAATTG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //