Array 1 857-1190 **** Predicted by CRISPRDetect 2.4 *** >NZ_JDUA01000042.1 Bifidobacterium minimum DSM 20102 contig42, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 857 29 96.6 32 ............................C TCGCCGACGACCAATACACCAACCCGATCAGC 918 29 100.0 32 ............................. ATTGATGGCTGCCTGTTCCGCATCACGCAGAT 979 29 100.0 32 ............................. AACCTTTGGGCCGCGGTCGCCGCGAACGGCAG 1040 29 100.0 32 ............................. ACGAATACGCCATCGGAAACAGCAGCCAATCC 1101 29 96.6 32 ............................C ACGCTGGCGAGTTCCGCGGCCTGGAGGAGTTC 1162 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 98.9 32 GTTTGCCCCGCACTCGCGGGGATGATCCG # Left flank : GCTTTTTGAGATATCGCCAGGGGTTTATGTCGGGAAGGCTTCGGCGAGAGTTCGTGAACTTCTATGGGAACAGATCTGCGAGAATATCGGTTCGGGTAGAGCGATTATGGTTTATTCCTCGAACAATGAGCAGGGGCTTGAATTCAAGACGCATGGACAGGAGTGGGAGCCCGTGGATTACGAGGGCCTTGAGCTTATTCGACGACCCAACAACAATGTGAAACAACAACGTTTGGGTGGCAGGCAGGCGGGATGGAGCAAGGCCTCACGATACCGGCGGTTTGGACGGTGAACATGCTTGCGGAGTGGTGCTTGGGAGGGAGCTGCTTGGGTGCGTTGGAGGAGAGGGGGAGTGATCTTAGATGCGGGGTCCTGTGTGTGGAAAAGAGTGGGTAGCTTTGCATCGGTTTGATATTGGTGTTGATGGCGTTGATGATCTGACTGTCCAAATTAAAGAAAATGCGCCGTCGCGCAGGCGGTTTTCGTTGTAATGTATGACT # Right flank : CCTTTCT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCCCCGCACTCGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTGCCCCGCACGCGCGGGGATGATCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-6.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 31-425 **** Predicted by CRISPRDetect 2.4 *** >NZ_JDUA01000043.1 Bifidobacterium minimum DSM 20102 contig43, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 31 29 100.0 32 ............................. CTGGCTGACATGCAGGTTCAATCCGTAAATCT 92 29 100.0 32 ............................. GGGACGGCCGTTCCGGTAGCCAAGCCGGCGGC 153 29 100.0 32 ............................. TTGAGAACCACAACATGTAGTGCCAATTCTCA 214 29 96.6 32 ............................C GCCGACAGCCAGCCCGGTCAGTCAGTCACAGG 275 29 100.0 32 ............................. GTGCCTGTGGACTCGGTGTAGGACTCGTTGAC 336 29 100.0 32 ............................. TATCGTGGCGGGACCGAGTAGAGTTCGGCCTG 397 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================ ================== 7 29 99.0 32 GTTTGCCCCGCACTCGCGGGGATGATCCG # Left flank : TTATCACTGGCTTTGGGATCCCAGGAGTATG # Right flank : GTTACGCCGGGGAGGGTTGCCT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCCCCGCACTCGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTGCCCCGCACGCGCGGGGATGATCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [26.7-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-386 **** Predicted by CRISPRDetect 2.4 *** >NZ_JDUA01000005.1 Bifidobacterium minimum DSM 20102 contig5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1 27 93.1 32 --........................... GGCACGACCACCGCCATGCAACTTCAGAAAAA 60 29 100.0 32 ............................. TCTTCGACGCTCACACGTGTCGACTGGTGGAG 121 29 100.0 32 ............................. GACCATCACCGTGCAGAGGGCGCCGCTCGTCG 182 29 96.6 32 ............................C GACTCGTCCGACAGGCTCACCGTCGTCGAGTC 243 29 100.0 25 ............................. GCACCGAGGAGAGACGGGAGAGAGA Deletion [297] 297 29 79.3 32 ........T..G........A.....TTT ATACCGACGATAGTCGTTGACATCGATGACGG 358 28 75.9 0 .G..-..T......T.......C...T.T | G [375] ========== ====== ====== ====== ============================= ================================ ================== 7 29 92.1 31 GTTTGCCCCGCACTCGCGGGGATGATCCG # Left flank : | # Right flank : TTATTAGCAGCGTCGAATCCCCGAAATTGGACGACGCGACTCCCCGTCGATGCGAACAGCAGCAAAAACAAGTGGGTTATCACTCACCGTTGCAGATTCCGGACGGGTCCGTGAATACGACGCGAACCGGTGGCAATGCGATAGAACCCATCATGGCGTGCATGTCCGAGGCAATCTCTCCATCATCAAAACACGGAAATCGTGTGCGATATGCTCATCCCAATGTTCTATCCCATAGAAAAGAAGGTGATCATGGCCCAGGAAGAAGAACGGCAGCTTGCTCTCCAAGCTCTCGCGATCATGACACCACATCTCAATGAAAAGCTGCGGGTTAGTCTTCAGGCCGACATCGATGCCGGCGAGCCATACGAGGCGCTCATCCCATTGGTGGGTGAGGCACCGAAGTATGGCGTGAGTCTACCTGAGGAACTGGTCCGGGCAACCATGGATATCGCCGAGCAGGACGATAAAGACGACCTCGGGGGAGTCTACGCTTACTA # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:-0.05, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCCCCGCACTCGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTGCCCCGCACGCGCGGGGATGATCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 31-1580 **** Predicted by CRISPRDetect 2.4 *** >NZ_JDUA01000044.1 Bifidobacterium minimum DSM 20102 contig44, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 31 29 100.0 32 ............................. AATTGGCGACCTTGTGGCAGGCCATGCCGGAT 92 29 96.6 28 ............................A CAGATACAACAGATACAACGGCAACGGC 149 29 96.6 32 ............................T GCTGCCATGCGGCGGCAAAAGCCCACGGGGCT 210 29 100.0 32 ............................. CCTGCAGCCGGACGGCGATGAGCGTCCATTCA 271 29 100.0 32 ............................. GAAAAGTCATGAGTAGGAAGAATCTCGTCACG 332 29 96.6 32 ............................A TCGCTGACGGTCTTTCCCGTTTTCTCCGCGTC 393 29 100.0 32 ............................. GCACTGCAGCGGATGCTTGGGCATGCGAGCGC 454 29 96.6 32 ............................C AAATTCGAGAAAGGAAATCAGCATGAGTTGGA 515 29 100.0 32 ............................. GCCCCTGCCTCCCGTAGGAGACAGGGGCACAG 576 29 100.0 32 ............................. GTGAGCAGGCCCAGGATTCGTTTCCTCATTGT 637 29 96.6 32 ............................T GGTCGGGTTTGCGGTAACGGACCGTGTACCGG 698 29 100.0 32 ............................. TCCGTGTACGTACCCAGATAGGTCGCTCCAGT 759 29 100.0 32 ............................. AATCCATCGTCACCCTCCTATCCGCAATAATC 820 29 100.0 32 ............................. TATACGGGCGATCCGAGCACCGCATTGTATAT 881 29 96.6 32 ............................C AGGAGACATCCTCCGCAGTGGACCCCGTCGAC 942 29 100.0 32 ............................. TACACGCGCGTGTAGATGTCGCCCTTCGTGCC 1003 29 96.6 32 ............................T ATCGCACCGGCCAAATTCCTTGAGCCCAATGG 1064 29 96.6 32 ............................C CAGTTGGTCAACGCCTACGGCAAGCACAGCGG 1125 29 96.6 32 ............................T TTGTGGAGTTCGGTCCTGCTCGGCAAGAAACA 1186 29 100.0 32 ............................. TGGAGCGTCCATACATTAAACCAACCATATGT 1247 29 96.6 32 ............................T ATTCGCGGAGTCTTCAGAGACCACTTTCCAGC 1308 29 96.6 32 ............................C CGGTTGTACTGGGACTCGTAGCCGATGCCAAG 1369 29 100.0 32 ............................. CGTCGCCTGTGAGGCGTCGGTTGACGATGGCC 1430 29 96.6 32 ............................C CGGGAGCCGATGCTGGCCGAATGCTCGGTGGA 1491 29 100.0 32 ............................. AAATATGGAGCATCGATGCCATTGCCGTAAAC 1552 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 26 29 98.4 32 GTTTGCCCCGCACTCGCGGGGATGATCCG # Left flank : GATGCGTCCGGGCGTCTCCTCCTCGAGGAGG # Right flank : | # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.86, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCCCCGCACTCGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTGCCCCGCACGCGCGGGGATGATCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [15.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //