Array 1 344549-346956 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBOD01000003.1 Cognaticolwellia aestuarii strain CGMCC1.6965 scaffold3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 344549 29 100.0 32 ............................. CGATGATCGACAAACAAATTAAAAGCGACAAG 344610 29 100.0 32 ............................. GTACACCGAGCAACGTGGAATTGACGCTGGGC 344671 29 100.0 32 ............................. GCGTTGAAATAGGCGTGGAGTTGACGCGAGAA 344732 29 100.0 32 ............................. CGAGCGTTATTGCGCACAGGCATAGCAATGAG 344793 29 100.0 32 ............................. CCTGATGTTTCCCCACCGTTACCACTAAATAT 344854 29 100.0 32 ............................. TATTGGCGCGACCAATAGCGGTTAGTATTCAG 344915 29 100.0 32 ............................. GGTACGTATACTCATGATAGAAATAACACCAG 344976 29 100.0 32 ............................. TTATAGGTCGATACGGTAATTCATATTTGACA 345037 29 100.0 32 ............................. GTTTCAGGATTTACATTTGGTAAAAATACTTT 345098 29 100.0 32 ............................. TTTTTTGATTATATCAGTTATCTTTGCTGCAT 345159 29 100.0 32 ............................. GTTTTTTTGAGTTGTTATGCACATTACTAAGT 345220 29 100.0 32 ............................. TAATATAAACCACGTATGATTCACCATCTGCC 345281 29 100.0 32 ............................. AGTTCGCAGGTTATGCCGAGGGCAACCAAAAA 345342 29 100.0 32 ............................. GAACACTAACAAACGGGGGTAAAAACATTGGC 345403 29 100.0 32 ............................. AATACTGAACGCTTAACTAAGCCCAAATTATC 345464 29 100.0 32 ............................. CTAAAATCACCGCCATAACCTGTAATAGTATT 345525 29 100.0 32 ............................. TCTAAATCCCACCTTGAAAAAGTAGTAGCTAG 345586 29 100.0 32 ............................. CTTTTATTTATCATGCAATAACCCCTCCCAAT 345647 29 100.0 32 ............................. GAATTCAGTTGTCAATGGTGACGGCTGGCATG 345708 29 100.0 32 ............................. GCATTCAGTTGTCAATGGTGACAGCTGGCATG 345769 29 100.0 32 ............................. ATTGTTAGTGCCATCAGATAAAAACACGTTGC 345830 29 100.0 32 ............................. CTTTATAATATCAGAGATGCTAACCCAACCAA 345891 29 100.0 32 ............................. TAAACAGTCTTGGTTATTGCAACGACCTGATG 345952 29 100.0 32 ............................. ACTGATAAATTCAAAGGACTGGATTTAGGTGA 346013 29 100.0 32 ............................. TCCGCCTTTTGGCTTATCAAAAACACACTGCT 346074 29 100.0 32 ............................. AGCCGAGGATATTGAGCACTTGGTTTACGATA 346135 29 100.0 32 ............................. GGTTTGCGTTTCGGTAGATTAGTCGCAATTAG 346196 29 100.0 32 ............................. AATCAGATCCAATCAGTAATTTTATTGACGTG 346257 29 100.0 32 ............................. GTTACGGACTGTTTCCACAAGATGTAAATCAG 346318 29 100.0 32 ............................. ATATCCACGTTTCTATGCCAACAGGTCAGCGA 346379 29 100.0 32 ............................. TAACTTGTCAGCAGTCGAATAGAGAGAAAATC 346440 29 100.0 32 ............................. TCGTTATTTGCATTTACTGAACTATTTACTAA 346501 29 100.0 32 ............................. CACGTCAATAAATACGTTAACTTTATTATTGT 346562 29 100.0 32 ............................. CTTGGTGATGGTTATTTGCTGCGTATAGATTT 346623 29 96.6 32 ............................A GTAATTGTTGGTCTTGGTGATTCGATAACGTT 346684 29 100.0 32 ............................. GGGCTTTATCTAAGTGTTGAAAGCTACTTCTT 346745 29 100.0 32 ............................. TTTGCACTATATCATTAATTAGCTAGATAACT 346806 29 100.0 32 ............................. GTGGTGACTTAACGCACGAATCAAACGGCAAT 346867 29 100.0 32 ............................. TTATGGGTTGATGGTCAGGAAATTATGAACAT 346928 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 40 29 99.9 32 GTGTTCCCCGTATCCACGGGGCTGAACCG # Left flank : TCCCCTTAATTGATGAAGTATTATCTGCAGGTGAAATTGAACCACCTAAACCACCAGTGGATGCACAACCACCTGCTATACCAGAACCTAAGTCAATAGGTGATTTAGGGCATAGGAGTAAATAAATTGAGTATGCTTATGGTTGTAACCGAAGCAGTTCCGCCCAGATTGCGGGGACGTTTAGCTGTATGGCTACTTGAAGTTAGAGCTGGTGTTTATATTGGTGACGTATCACGTCGTATCCGTGAAATGGTTTGGTTGCAAGTAACAGAATTAGCAGAAGACGGTAATGTAGTAATGGCTTGGGCAACGAATACTGAGTCAGGATTTGATTTTCAAACTTATGGTGAGAACAGGCGAGAGCCTGTTGAATTAGATGGTTTGAGATTAGTAAAGTTTAAAGCATTGTAATCAAGAAATTAGTATATATAGCTCTTTAAAAATTTGGTAGAATTTAAAAGTTCTAAAAAAACCATTAAAAACAACGATGTTTTTTTAGT # Right flank : GTGTGATTATTTAAATGCAAGAAACAAACAATGGAGGTCCTCGTATACCAGAAAAATTAACCTTAATGCCACTGTGTTTGTCTTTTGAGAATTACTTAATTCAATACCAATAACCTAAACCCCTTAAAATAAAGATTTAACCACATCTCTGAGTTTGATTTTATTCGTTATCACCATCATCTTCGTCTTCATCATCGATAATATCTGGCGTTACTGCGTCAACAACGTCGATAGCACCTCCAACCACTGTTGTTGTGGCACTTACCGCGGTAGACACAACAGCAACTGCAATGCAGCCTGATAAACTAAAAGCAATAGATAATAACAACAAGCTGTGTAGCACTTTTTTCACGGTAATATTTCCAAATGAATAAATATATGAAGGTGCACAATACGCTAATTTTGGGGCGAATCAATCGTTGTTTTTATGTTTTTTGAAAGTCATATTTTCGGCAAACTTTTATCACCATTTTATAAACAGCTAAAACGGATAAAAGCTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTATCCACGGGGCTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTATGCACGGGGATGAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //