Array 1 44874-45755 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZDI01000022.1 Salmonella enterica subsp. enterica serovar London strain 95-0457 NODE_22_length_83907_cov_4.43814, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 44874 29 100.0 32 ............................. GTGGATATGCTGGCCGAGAAGGTTGGAACAGA 44935 29 100.0 32 ............................. GACTACCCGGCATTTGTGGACGCATATCGGCA 44996 29 100.0 32 ............................. CTTCCAGTTTTTTCCCTGCCTTTTGGGCGGCG 45057 29 100.0 32 ............................. TACCTGACGCTGATCCAGTCGATCGCGCTGCT 45118 29 100.0 32 ............................. ATTTTCTTTGCGCCCGTACTCAACGTGGGAGG 45179 29 96.6 32 ............................A TCGCCCCGAGGTCGTTCACGACGTCCTCGTGC 45240 29 100.0 32 ............................. CGTTACTCCAGACAATAGAGCGCCTCACCACT 45301 29 100.0 32 ............................. CATAGGGGCCGCAGAAGTTGCCACAACCACAA 45362 29 100.0 32 ............................. GGGTCAATGTTGATGCCGGGGTGTGTTGTTAC 45423 29 100.0 32 ............................. GGAACTCATGCTTTTACCTGATGCGGCGGCAC 45484 29 96.6 32 ..........T.................. CGAGGCGGCATCAAAGACGACGAAACACCATG 45545 29 100.0 32 ............................. GATTTTCCCGCGTTGGTTGTATGCCGTGCGTG 45606 29 100.0 32 ............................. CGCGTATTAAACGGGCAGATCGAGGAAACAAC 45667 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 45728 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGTGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCTTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 55163-56413 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZDI01000022.1 Salmonella enterica subsp. enterica serovar London strain 95-0457 NODE_22_length_83907_cov_4.43814, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 55163 29 96.6 32 ...........................T. CCAGCGGAGAGCGAGCTATACCAGGCTCAATC 55224 29 96.6 32 ...........................T. TCCGGAAAATCTACCGTTCCAGGGCGGGGCCG 55285 29 96.6 32 ...........................T. GGAACCAAGTATACGCGTAGACAGCGTCAACG 55346 29 100.0 32 ............................. GAATTGGCGTATCTGTGTCTTGCCAGACAGGG 55407 29 100.0 32 ............................. CGTAGACCACCTCTTTCGATATGTGAGTGAAG 55468 29 100.0 32 ............................. GTTAGGGAAGGTACTCCTGGCTAATTCTTTTG 55529 29 100.0 32 ............................. ACATAATCCCCATGTACATAATTTATGCTCCG 55590 29 100.0 32 ............................. ATCCAGCAGAGCTACAGGAACGCCGCAAGGCC 55651 29 100.0 32 ............................. TTGATCCGGGCATTTGAATATTGGGCTAAAGA 55712 29 100.0 32 ............................. TTAAATGCATCGCGATCCCTTGCAATTATAAC 55773 29 100.0 32 ............................. CCGGGATCCGTCATCGGTCGTGGTTCACTGCA 55834 29 100.0 33 ............................. GGCACGTTTACCGTTCCGGCTGGGGTTTATCGT 55896 29 100.0 32 ............................. GGCGGATCCACGATAATTTTGTCGTTATGTAT 55957 29 100.0 32 ............................. TCCCCCCGGAGGCTGTACCAAAAATCGTAGAA 56018 29 100.0 32 ............................. GCGCTATTGTATATCGACCATAAACATCGGCT 56079 29 100.0 32 ............................. TCCCTGCTGGCCGTTCTGGAATTGCGTAGCGC 56140 29 100.0 32 ............................. CCGGAGCCTGACCAGGATTTTTCCGCCGTGTA 56201 29 100.0 32 ............................. GAATTGCAGGAGTGGTTTATCGAGTGTTTACA 56262 29 100.0 32 ............................. AATCAACGGATCTTGCTAATGTAGTTTCTGCA 56323 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 56384 29 93.1 0 A...........T................ | A [56410] ========== ====== ====== ====== ============================= ================================= ================== 21 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGCCTGGTTTGCCGACAGCAATAAAAAAGCGTTGTTGGCGGAGGTTGGTGTAGGCACGTTGGATCAGGCGATGATGGCGGTAATGCCATTTAAACATAACAACCTGCGGTTACTGGGTCTTAGCAACAAGATTTTACTGGCGGATGAGATCCATGCCTGTGATGCATGGATGTCCCGAATACTTGAAGGTTTGATCGAACGGCAGGCCAGTAATGGCAACGCCACTATTCTGTTATCTGCGACGCTATCGCAGCAGCAGCGAGATAAGCTGGTGGCGGCATTTTCCCGTGGGGTGAGGCGTAGTGTGCAGGCGCCGTTGCTAGGCCATGACGATTATCCCTGGCTGACTCAGGTCACACAAACAGAGCTGATTTCTCAGCGGGTTGATACACGCAAAGAGGTTGAGCGTAGCGTAGATATTGGCTGGCTACATAGTGAAGAGTCGTGTCTTGAACGTATAGGTGAAGCAGTGGAAAAAGGAAACTGTATCGCCTGGATAC # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //