Array 1 3056474-3054858 **** Predicted by CRISPRDetect 2.4 *** >NC_011080.1 Salmonella enterica subsp. enterica serovar Newport str. SL254, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3056473 29 100.0 32 ............................. CTGGAACGGCAGTATTTAAAAGGGGTTATTGA 3056412 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 3056351 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 3056290 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 3056229 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 3056168 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 3056107 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 3056046 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 3055985 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 3055924 29 100.0 32 ............................. CCTGGCGATCGCATTTGGGTGCGGGAAACATT 3055863 29 100.0 32 ............................. CCGAATATGGTGATAATGTTGCACCTTCGCTC 3055802 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 3055741 29 100.0 32 ............................. CCAATAACCGACGAGGGCAAACGCCGTGCGCG 3055680 29 100.0 32 ............................. AGGACTGAGGGAATAGGGACCGTAATTGTAAA 3055619 29 100.0 32 ............................. ACAATGTTGCGTCTAATTCTCATTAATTAAAA 3055558 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 3055497 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 3055436 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 3055375 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 3055314 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 3055253 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 3055192 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 3055131 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 3055070 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 3055009 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 3054948 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 3054887 29 100.0 0 ............................. | A [3054860] ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3074329-3073143 **** Predicted by CRISPRDetect 2.4 *** >NC_011080.1 Salmonella enterica subsp. enterica serovar Newport str. SL254, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3074328 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 3074267 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 3074206 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 3074145 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 3074084 29 96.6 32 ........A.................... TCATGCTTTCGACTAAATACTACCGCGACAAC 3074023 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 3073962 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 3073901 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 3073840 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 3073779 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 3073718 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 3073657 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 3073596 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 3073535 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 3073474 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 3073413 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 3073352 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 3073291 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 3073230 28 96.6 32 .............-............... GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 3073170 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //