Array 1 20070-18978 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CPVQ01000002.1 Streptococcus agalactiae strain RBH12, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
     20069	    36	 100.0	    30	....................................	ACAGCACTCGTCAATGAATACGGCTACTCA	
     20003	    36	 100.0	    30	....................................	ATATAATAAAGTCTATAGAAAGACTACATT	
     19937	    36	 100.0	    30	....................................	CATACTAGCTTTCATGACTTTCGAACCTTT	
     19871	    36	 100.0	    30	....................................	AACACAGCTTCCTCGAAAGGGATATATCTA	
     19805	    36	 100.0	    30	....................................	AATATTGAAATAGTTTGTGCAGATGGTTTT	
     19739	    36	 100.0	    30	....................................	AACGATTTGCACAATAATCCAGGACAATTT	
     19673	    36	 100.0	    30	....................................	GTTTAATTTTGAATAATATCATGTTTACTC	
     19607	    36	 100.0	    30	....................................	AAGTGTGTTATCATATCTTCCTTTGGTTTT	
     19541	    36	 100.0	    30	....................................	AATAGGCTTAGGCGCATCTGGTTCTTTACT	
     19475	    36	 100.0	    30	....................................	ACTATAAGTATTTTGTTTTATCCCTAGTAG	
     19409	    36	 100.0	    30	....................................	TATCTACGAGACGAAAACAATTGCCAATGT	
     19343	    36	 100.0	    30	....................................	AGTTATCAATGCTATATGGTTTCTCATCTT	
     19277	    36	 100.0	    30	....................................	GTTTAATTTTGAATAATATCATGTTTACTC	
     19211	    36	 100.0	    30	....................................	TATGTCATTGTGATTGTGGGAATACTTGTG	
     19145	    36	 100.0	    30	....................................	TATTTCATCATAGAAAATCCTGCTAGTGGT	
     19079	    36	 100.0	    30	....................................	TGGTTATACATTTACTAATCCATCAGCATT	
     19013	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
        17	    36	 100.0	    30	GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	                              	       

# Left flank :   CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG
# Right flank :  AAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGCCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATGA

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:58.33%AT]
# 	Reference repeat match prediction:         R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-0.20,-4.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,4.87   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
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