Array 1 9289-15459 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACOIE010000049.1 Clostridium perfringens strain 10 NODE_49_length_18387_cov_101.559, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 9289 29 100.0 36 ............................. ACAAGGAAAGAAAATAATGCAAAAAGTGTATGTCAT 9354 29 100.0 36 ............................. CTAGCTAATACTTTAGTCTTAAGGCGTGTATTTAAT 9419 29 100.0 37 ............................. GTAAAGTGCGAAGGAATTAAGTCTTTTGGACAACAAG 9485 29 100.0 37 ............................. TCATAATCAGCATTTCTTTCAGCTTTTTTCATATAAG 9551 29 100.0 36 ............................. AATATTAATAATGAAAGATGGTGATTATATGCCTAG 9616 29 100.0 36 ............................. AATTACAATTAGGAGGACTTTATATGAAATTAAATA 9681 29 100.0 37 ............................. TTAGTCATGATAGGTGGTCAAGGAGCAGGAAAGTCAA 9747 29 100.0 36 ............................. GTTATTTCTGAGAGTTTTTTATATCCACCAGCCTCT 9812 29 100.0 38 ............................. ACGCTTATAGAATCAATTAAACTCATAACCTGTTGAGA 9879 29 100.0 36 ............................. CTAAAGTTGAAACCTTGCGTAAAGTATCTTTAAGTT 9944 29 100.0 36 ............................. ATGGCTCTCGCCCCTAAGCATTACTCGTAATGCCAT 10009 29 100.0 36 ............................. GTGAAAAGAATAAAAAAAATAAAACAGCAAAAGAAG 10074 29 100.0 37 ............................. AGACTTTCTAGAAGAAACACTGTATATTGTTGCCATG 10140 29 100.0 37 ............................. TTTGAAAATTCTACTGATATAACAAGTCTACTAGCCA 10206 29 100.0 37 ............................. GATTTAACTTTTGTTCTTTTAAAAATCTTTTGTGACG 10272 29 100.0 37 ............................. CAAGAGCAATCTGTAGATAAGGCTTTATTCCCTGCTA 10338 29 100.0 37 ............................. TCATAAAACAACTGGAAAAGCAGTTTGGATAAGGAGG 10404 29 100.0 37 ............................. TGTTCATTTTTAATTTCAGTAACTAAAGCTTTACCTA 10470 29 100.0 36 ............................. AGCAACAGTAGCAAAAGTTCTTCTAAATCTATGTGG 10535 29 100.0 37 ............................. TCCACTCCAAGATGATTACAAGAACATTAATTGGATT 10601 29 100.0 36 ............................. ACAGAAACTACACCAATACAAGCATAAGCTTAATAC 10666 29 100.0 36 ............................. CTATTAAAACCACACGCTTTAGCAAAAATTGCTATT 10731 29 100.0 36 ............................. TGGATATTTATAATATTCATAAGCAGATGGAAAAGA 10796 29 100.0 36 ............................. TAATAACTGGAAGAGACTAGACGCTATGGACTTATT 10861 29 100.0 36 ............................. ACTAAGTAGGGTAGAAAGTGGAGAAATTACCAGGAG 10926 29 100.0 37 ............................. TAATCTTTTAATCTTCTGTATTTACTAGCATCCAAGC 10992 29 100.0 36 ............................. ACAGAAACTACACCAATACAAGCATAAGCTTAATAC 11057 29 100.0 36 ............................. CTATTAAAACCACACGCTTTAGCAAAAATTGCTATT 11122 29 100.0 36 ............................. TGGATATTTATAATATTCATAAGCAGATGGAAAAGA 11187 29 100.0 36 ............................. TAATAACTGGAAGAGACTAGACGCTATGGACTTATT 11252 29 100.0 36 ............................. ACTAAGTAGGGTAGAAAGTGGAGAAATTACCAGGAG 11317 29 100.0 37 ............................. TAATCTTTTAATCTTCTGTATTTACTAGCATCCAAGC 11383 29 100.0 37 ............................. AAGAAAATAAGAGTAGCACCATTCGCAAAAATTGACG 11449 29 100.0 36 ............................. TAATTACCCCCCTTTTATTTAACTGTTAAGAATAAT 11514 29 100.0 36 ............................. AAGCAATTTATTAAAGATTCTATTAAAAATAGAAAA 11579 29 100.0 36 ............................. GCATTCAAATGGATTGAAACAAAATAATCTACACCT 11644 29 100.0 35 ............................. TGAGTTAACCTGGTTTGCTAACTCTCCAAGCTTAA 11708 29 100.0 37 ............................. AAAGAAATTCTTATAAAATCTATACAACTAGAAGAAG 11774 29 100.0 37 ............................. ACAACTTTACTTATGACAGAGAAAACATTTGCTGACA 11840 29 100.0 37 ............................. TTTAATAATTCTGTAGATAATTTAGAGTGGGTAACAT 11906 29 100.0 36 ............................. GTCAGTAGGAGCTATCAGTTGTGGGTACCTTTTGGC 11971 29 100.0 36 ............................. TTGTAACTTCTTTAATATAATTCCAGCAATATTATT 12036 29 100.0 37 ............................. TCAGTTACAGAAAGATTCTTAGCATCTATCCAATTTC 12102 29 100.0 37 ............................. GTTGAAAGTACTTTAAGCATTACTTGTACCACTCTTC 12168 29 100.0 36 ............................. TAGAACCTTTACCGCCTAGCACTTCAACACCTTTCA 12233 29 100.0 36 ............................. TTATGTAACTAAGATTACAACTTTTATGAAATGGTA 12298 29 100.0 37 ............................. TAATATTCCACTCCTTACTTAATAAACTCCGAGGACG 12364 29 100.0 36 ............................. GGAGAATTAGTCCAAGGAGTTTTTAATGCAGATATT 12429 29 100.0 35 ............................. AACTTTGTAGAATCGTAAAGCTTATCTTCAACTTG 12493 29 100.0 36 ............................. GTTATTATCATCATTATCCCCGAAAGCTTAGTTTTC 12558 29 100.0 36 ............................. TTTACAGTATCAGTTACAGTTACCCAACTGTCTTTG 12623 29 100.0 37 ............................. AGGGAAAACTGATGCAATAGGTAATTATAAATTTATA 12689 29 100.0 36 ............................. CTTAATGATAAACCTAAAAAGAAAAAAATACGCAAT 12754 29 100.0 36 ............................. AACTTTATTAAAATAATAGCTGCATATAATATCTTT 12819 29 100.0 36 ............................. GTGAAAACAGTAGGTAAAAATTTATTAGATCCATCA 12884 29 100.0 36 ............................. TGAGATTTTTTAAATCTATAGTGCTATTCGGAGTGT 12949 29 100.0 36 ............................. TTTGTGAGTTATAATAAGATGCTGGAAGTCCAGTTA 13014 29 100.0 36 ............................. TATAGTATCTTTAATAAATTTTGTAGTAGTTGCACA 13079 29 100.0 36 ............................. TTAGATTTAGCATGTTTATCTAAGATAGCAAGAGCA 13144 29 100.0 36 ............................. AGAATAGTTTATAAGTTCTTATAATAATAAATATTA 13209 29 100.0 37 ............................. TTTAATTCTGAATCTTTCTCCAGCTGGTATTTTTCCA 13275 29 100.0 36 ............................. TGTTTAACTATTTATTTTCAGTTGTTGGTACAAAAT 13340 29 100.0 37 ............................. AAAGAACTTGAAAAAGAGCTTGACGAATTTCATGAAG 13406 29 100.0 36 ............................. TTATGTTCTGAAATTATATTAGTAATTGGTAATTCA 13471 29 100.0 37 ............................. TTATGGTATGCATGGTATAACTCTAAACTTAATAGAG 13537 29 100.0 37 ............................. AAGTTTTCAGGATAAACATAGAAACATTGTGAAGTTG 13603 29 100.0 36 ............................. CCATAAACCCTTTGTTTTTTAAAATATCTCTTACAC 13668 29 100.0 36 ............................. CTTTACTAATTTATTAATTGAGGTGTTTTAAATGAA 13733 29 100.0 38 ............................. GTTGAATAATTGAACCATGTTTCTCTCTATCTTTATAG 13800 29 100.0 36 ............................. GATGTTAATAAGCGTATTAAAATAAAACCACGTAAA 13865 29 100.0 36 ............................. GTTGAGAAAGTGCAAGGTGTTAATAGGAAGGTTAAA 13930 29 100.0 36 ............................. TGTCGTTTTCGGTGGATTAACTCTTTTATTTTTAGC 13995 29 100.0 36 ............................. GAAGTTACATGAGCATTATTTATAATTGTAGTCTCA 14060 29 100.0 37 ............................. CCCAAATGGAATATCAACAGGATTACCAATATTAATA 14126 29 100.0 36 ............................. TTATTACTTGTTTAACGAGGTGTACACCTTAATTTT 14191 29 100.0 36 ............................. TACCAAGCAAGCCATAAAGGATAATTTACTTCATTA 14256 29 100.0 36 ............................. TGACTAGCATTAGTAATATTTAAGGCTAAGATATTA 14321 29 100.0 36 ............................. ATATTTATTTACTTAACAAATATATATTAGTGCTAC 14386 29 100.0 36 ............................. TTCTGTGGAGAGAAGCTGTAGTGGGGAGATTAGTTA 14451 29 100.0 36 ............................. CCAGCTTCTTTTAACTCAGAATAGCTAGGTTCAACC 14516 29 100.0 37 ............................. TTCAGGATGTTGAGATTTAAGAACACGACAATCAGGG 14582 29 100.0 36 ............................. TATGGATTTATGACTGGAATGTTTGCATGGTTTTGT 14647 29 100.0 36 ............................. TTATTCACACATCAATGACAGATGTTCTTTTATCCC 14712 29 100.0 36 ............................. TGTCCTAAATTAGATATTCAAATTGAAGAAGGAACA 14777 29 100.0 36 ............................. GTGTTCATTATTACGTTGATGATACTGGAGTATATC 14842 29 100.0 36 ............................. CAAAAACACCTTTTAAAATGACAGCTTACTGTGAAA 14907 29 100.0 35 ............................. CTATTAATGATATATCCGGATAGGCGGGGTTGAAT 14971 29 100.0 36 ............................. AGATTATGCAGCACTTTTTTTGCTTGAATATCGTTT 15036 29 100.0 36 ............................. TAAATTCATCTATAAAAAAGTTGTCTGAAGGAATTA 15101 29 100.0 37 ............................. TTTATTAATTTCTTAACTATATATTACTACAAACGTA 15167 29 100.0 37 ............................. AAATAATTAGCAACTTCATTCTTAAATCTTTTAATAT 15233 29 96.6 36 ......................G...... GTTGGAACTTCTTTATATCAGCTACTATATCAGTGC 15298 29 100.0 37 ............................. GGGAATTAGGTAAGAAGTTCTCTATATTGTATATTGA 15364 29 100.0 37 ............................. TTGCTTTTTAAGACACATTCTAAATATGTGCCTTCAT 15430 29 86.2 0 .................GAA....C.... | C [15457] ========== ====== ====== ====== ============================= ====================================== ================== 95 29 99.8 36 GTTTTATATTAACTATGAGGAATGTAAAT # Left flank : AACTTAGAAATATAATATCTTTTGATATAATACCTCAATGTATTTATGAGAAAAATGAATCAGAAATTGAAAGCTTACTTGAAATTATAAATGATGAAAAAACAGATAAAATAAATAGAATAAAATCCATAGATAAAATAAAAAGTTTTACAGTATCAGTTGGGCAATATGATATTGAACTTTTAAAAAATAAACTTATTATGGAGTTAGAAGTAGGAAAGTATGAAAGAATTCCAGTATATAAATGCAATTATTCAGAGTTAGGATTTACTAGAAACACAAAAGAAGATGTATATGATAATTTCATATAAAACTAATTTTGCAGTAGATCTATTTTCTTATAATACTAGCTGTAACCAAGTAATATCAATGGTTAGGAGAAGATTTTTATTGATACACTAAAACATTACTGATGGTCTACTGCAAAATTTTAATATTTATGATAAAATTAACAATAGAGAATGAGTCTATTACTAGCTTTTAGCATTTTAAAATTTGGG # Right flank : TATATAAAAAGCATCTTCAAACTTAAAATCATACTTTTAAACTTATAATTTTTTGTTTCAATAGCAAGTGAACCTAATGAAGATATATTTCCAACAATGTTTTGGCTTGCTTTATATACAATATTGCCATTTCAAAGTGTAATAAATCTTTTAGTAGGCTATAACATAGAGAGTTTGTCATATTTAATACTTCCAATATATATGGTAACATTAAGTTTATTAAGTTATAAGGTACTTAAATTTAAACCTCAAAAGAAAAATAAACAAGATAAGTAATTTAAGTTTTATAATAAGAATTAAAAAGTAAAATGGACATGCTATCTGTCCATTTTTACTTAATTATTGATATATACTTGTTAAATTTAGAACTTTGAATCTAATAATCTATACATTTAGCAGTTTACATCTAATAGCTCCCTTGAAATTTCCTCAAATCTTTCATCAGATATACCAAGTTTTTTCTTAAATATATCATCATCAATTCTAGCAACAATAACCTC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //