Array 1 108759-107874 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYZR01000011.1 Salmonella enterica subsp. enterica serovar Blockley strain 67-3024 NODE_11_length_178077_cov_4.13064, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 108758 29 79.3 32 ......................ACGTGT. GATCTTTTTCCTCCTCAAATCGTGGGGAATGG 108697 29 100.0 32 ............................. TGAATCGCGAGATGGGTTTTATGATGCGGATC 108636 29 100.0 32 ............................. GACTGGTATATCAACAATCATGAGCAATTCTG 108575 29 100.0 33 ............................. GAATCCCAATCTATTACCGGCACGTAGCCGGGG 108513 29 100.0 32 ............................. GCAATATCAACCGGGCGACCTGTCGCCTGCTC 108452 29 100.0 32 ............................. GCTCTTTCTCCGTTAGTGTGAATTTCGTCTTC 108391 29 100.0 32 ............................. TAACGCTTCAATGTCGCAAGCTTCAGTTCGTT 108330 29 100.0 32 ............................. GATTTACTAAGGTCAACGAGGGATTGAATTGG 108269 29 100.0 32 ............................. GCGAGGATCTTGTGTTGCAGGTTGGTCTCGCC 108208 29 100.0 32 ............................. CAGCGCCGTCCCGCTGCGCAGATGTTCGGTGA 108147 29 100.0 32 ............................. CAGGTCTATTGGACGATCGATAAAATCATTCA 108086 29 96.6 32 .............C............... ATAATAAGCTCAATAATGTAGATATTGAATCA 108025 29 96.6 32 .............C............... ACGACGGCACAAAAGAAATTTCCACCGTGGAT 107964 29 96.6 32 .............C............... TCGCACAACGCCTGGATATCCGCCCATCGGCC 107903 29 93.1 0 ............TC............... | A [107876] ========== ====== ====== ====== ============================= ================================= ================== 15 29 97.5 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 126826-125029 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYZR01000011.1 Salmonella enterica subsp. enterica serovar Blockley strain 67-3024 NODE_11_length_178077_cov_4.13064, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 126825 29 100.0 32 ............................. GAGTTTCATAAATAATAAAGCCCCGTCTTTTA 126764 29 100.0 32 ............................. CTCGGGTTCGGTTTATACAAGGAAGATCAGAC 126703 29 100.0 32 ............................. TTACCTGCACTGCGCCAGCGATTTTCTATTAA 126642 29 100.0 32 ............................. ACTTATTCGACGGGAAAAGCATTGATGTTACT 126581 29 100.0 32 ............................. GAGCCAGCCCTGCCAGCTTTAACATGCGCTGA 126520 29 100.0 32 ............................. CTGCCCGTCTCGTTGTTAATCGGGTTACCGTA 126459 29 100.0 32 ............................. ATCTGGCTGTACTGGCTGGCGGTGATTTCCTC 126398 29 100.0 32 ............................. CCCGCCCAATATCATTCCCATTCGGGTACAAC 126337 29 96.6 32 ...............T............. ACATGCGCGAGGGTGAGCGCCTTTGCCGCACT 126276 29 100.0 32 ............................. GCACGGATATGGTTGACTGCATTTCGCTGAAC 126215 29 100.0 32 ............................. GATGCGATCAGGCTGGCGATCAAGCAGATGTC 126154 29 100.0 32 ............................. GATGCGATCAGGCTGGCGATCAAGCAGATGTC 126093 29 100.0 32 ............................. ACGTTCGGCCATTTTCCCGAACGCCGTAAAAC 126032 29 100.0 32 ............................. GGGAATGGCTGGATCTGGTGTTGGTTATTTGC 125971 29 100.0 32 ............................. TCGTATCCCTGCAGCTCCAGCGACCCTTCCCT 125910 29 100.0 32 ............................. GCAGGGTTTTACGGCTCCACGTGTTTTTTACG 125849 29 96.6 32 ..G.......................... CGAGAGATCATAGACCAATGGACTGAAAGACT 125788 29 96.6 32 ..G.......................... AATTGATCACAATCCTGTATAAGCTGCGCAAA 125727 29 96.6 32 ..G.......................... AGGCTTTGACAATGGCCTGGTTAAGTTGGAGT 125666 29 96.6 32 ..G.......................... TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 125605 29 96.6 32 ..G.......................... AGTACGAGGCACTATTCGGCAAGAAACCGCAC 125544 29 96.6 32 ..G.......................... GGGGCATGTGCGAAATTTCGCTCCAGTTTGTT 125483 29 93.1 32 ..G.....................C.... GATTGTTCAGATTGGGAATTTGACCAACGCCC 125422 29 93.1 32 ..G..........T............... CCTGAGGAGATATTCACCTTCCTGCATTTCAT 125361 29 89.7 32 ..G..........T..............A GTCAAATAAATATGAGTGAAGAAGCCAAAGCC 125300 29 96.6 32 ..G.......................... AAAAAAATGCGATCGGTACTCAACCCGGCCAC 125239 29 96.6 32 ..G.......................... CGCCGGTTTCGGTGGGGGCTGAATCCTGAACC 125178 29 96.6 32 ..G.......................... TGGGACATTCTCGCTAGTCACGGTCATGTCAT 125117 29 96.6 32 ..G.......................... TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 125056 28 79.3 0 ..G............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 30 29 97.3 32 GTATTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.76, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //