Array 1 142042-141482 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAACAC010000002.1 Neisseria mucosa strain N32, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 142041 33 93.9 33 G.....................T.......... GAGCGCGCCGCCGTAAAAACCTAAACTACCGAT 141975 33 84.8 34 G...A.......TA........T.......... AGCCTATCAAAGTCGGCCAGCACCTTGTAGCCGT 141908 33 90.9 34 ............TA........T.......... AACCCTACCGTCGAAGGCGATGAGGGTATTATTT 141841 33 93.9 31 A.....................T.......... AGCGGAGCAGTAGCCAACGCCGCCGCCAAAG 141777 33 100.0 33 ................................. TTCCGGACGCTCATTGGTGTCGTACCAGCGCGT 141711 33 100.0 33 ................................. TTCCGGACGCTCATTGGTGTCGTACCAGCGCGT 141645 33 90.9 33 ...T.............A....T.......... AGGTCTTCAATACGCTTGTCCGCCTCTTTCAGA 141579 33 93.9 32 .............A........T.......... AGACGACCTCTACCGTACTGGCGATTGATTTT 141514 33 93.9 0 G.................A.............. | ========== ====== ====== ====== ================================= ================================== ================== 9 33 93.6 33 CCCAGCCGCCTTCGGGCGGCTGCGTGTTGAAAC # Left flank : GGCGCATAGTTGCATCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACATTAGGCCTGTCAATCTTGCAGCAATGTTATTTTAGAGTTTAGAAATCGCTATCCAAATATTCAATTAAATATTTTTACAGGAAAATAGAATCATGGAAAAAATAAAAAATTATATAGAATTCAAGAAATTATTTAAAAATATAACGGAAAAATTTGTCAGAGATTTAGATATAACATTAATTGAAGCAGCTGAATATTCTATAATTGAATTCGAAATTTATTTATCTGAATATCCGGAAGATAGTACATTTATTTTTACAGCATGGGCAATCTATCTGTTAGAAAATAACTGTCTCAATGAAAGAGGAAAAGATAATTTTTTCATCGCGGAAATGAAAAAATGTTATCAACAAACTAATTTGGATAGAATAAAATCTATCTATTCTTCGAGTGACTATCATATTTTTGCTAAGGATGTAAACAAGATTCAACAAACATTTAAATTAAATCTT # Right flank : CCTTAGCCGAGGGAGCAGATGTAGAGGCGCAGGCCCAGCCGTCTTCAGCTAACCATATATCGAAGCCGGACGGTGCTTTCCTGATTTAAACCGTCTGTAACCATCTGCTTTTTGATGGTATCTCTGAAAAATTATCTTTGGAATAGGAAATCGTTAATCCATCAAATCTCTGTCTTTCAGACGATTGAAATCGGATTTGTTCTATTCTGATTAAATCGGATTTTTCCAGCTTCGGGCTGCCGGATAAATTTGATGCAATGCAGGGTTTGATTGGCAAGGGGCTGGATAAAAATGGCAGCTTTGTTATAATGAAACTACTGGCAGTTACATACTTTTCTTGGCATTGCGCCGTTTTATTCATATTAACGAAAGAGGAAAACAAAATGTTTCCAGAATATCGCGATTTAATTTCCAAATTAAAACAAGAAGACGCCCATTTCGCCCGTCTGTTTGACGAGCATAATGAGTTGGACGATAAGATTACAGGTTTGGTTAATAAT # Questionable array : NO Score: 5.35 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGCCGCCTTCGGGCGGCTGCGTGTTGAAAC # Alternate repeat : CCAGCCGCCTTCGGGCGGCTGCGTGTTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 148377-142495 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAACAC010000002.1 Neisseria mucosa strain N32, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 148376 33 97.0 33 T................................ GCCTGCGTGGAAGGCTACACCATACCCACCCGT 148310 33 100.0 33 ................................. CAGCGGTTGACAGGCTGGGAAGGTCGGACAAAT 148244 33 97.0 35 G................................ ATGCTTTTCAGGGTTACGCGGTAAGACTGATAGGA 148176 33 100.0 34 ................................. AAACCCTGCCTTATCCAGCAGCTTAGAAACATGG 148109 33 97.0 33 A................................ AGACGGCTGTCGTGAAGTCTGTTGCTCGGTCGG 148043 33 100.0 35 ................................. CGCCCTCAAGTTTCGGCAGTTTGGGGCATGGCTGC 147975 33 97.0 34 A................................ ATGGCGCAGGGCGATATGCAGGCGGTAACGCTGA 147908 33 100.0 33 ................................. CGTGAAAGGGGCATTGCGATGAACCGTGAAGCG 147842 33 97.0 33 A................................ AAGAGTAATCCGTGCAGACCGTCCGAAAGGGCG 147776 33 97.0 34 G................................ ATAGCTCGCATCACCACTCGGCATACATTGCGCA 147709 33 97.0 33 G................................ AGTCTGAGTTAAATGCCCCAAAAGACGCTTTTA 147643 33 97.0 34 A................................ AGATACGCCGTCCCGCGTAACTGGATTGGTCGCA 147576 33 100.0 32 ................................. CAACAAATTCAAGCTCGTAACTATACAAGCGC 147511 33 97.0 33 A................................ AGCACCCTACACCCCACAAGGTAGCAATACACC 147445 33 97.0 35 T................................ TTAAAAAGCATTTCGAACACTATGTCTGCGTATAC 147377 33 97.0 33 G................................ CGGCGACACCCAAAAATTCAAAAACAGTCAAAA 147311 33 97.0 33 A................................ CATCTTCGCAATCACTTTGATTCGTCGCGTATT 147245 33 97.0 32 G................................ ACGAAACCGTCAACGCCCGCGACCAAGGTCGT 147180 33 100.0 35 ................................. AGAACGCAGTCTATATCCGCCTGATGACGCCTTTG 147112 33 97.0 33 G................................ CGCACTCAGGGCATACCGTCGGCGTCCGCATGG 147046 33 100.0 34 ................................. CTGTGTAAATCCATCTCATCTTTTTATTGGCACT 146979 33 100.0 36 ................................. TGAAGTCCAACGCATTCAGGCAGTATATAAAACAGG 146910 33 100.0 33 ................................. TGCTCTCGGATTATCGACTTGGAAAGCAGGGGC 146844 33 97.0 34 T................................ AATCATAAATTTTAGACAAGCGATTGATGAAAAA 146777 33 97.0 32 A................................ CCAAACCCCTTAAAAATCCGTCGTCGGCTCGT 146712 33 97.0 34 T................................ AATGCTGTTTCAGTTAGCGTCTTCGCGCCCTTGT 146645 33 100.0 34 ................................. AACCACTTGGGCGCGTATCATTTCGCGTGTCCCC 146578 33 97.0 34 T................................ TAACGCCTCGCGCAATCTGATTGATGAATGCCGG 146511 33 97.0 34 T................................ AAAATGCTTTTGTTCATTGAAAACTGTTATTCTC 146444 33 97.0 32 G................................ TAGGCAGCCAAACGCCCGAGCCGTTGAGAGGA 146379 33 100.0 33 ................................. AATTTAGCTTTAATTGCCGCATCACACTGACTG 146313 33 97.0 33 A................................ CTGCGTTACACCTCCGCCGCCTTTGCCGCCTTG 146247 33 100.0 34 ................................. AGGTAGTTCAGACGACCTTAACCAAAGCGACAGG 146180 33 100.0 33 ................................. CAAGTCGATGATCCGAGAGCATAACTGCGTGAT 146114 33 97.0 33 A................................ TACAAAGACATCCATCTGTCAGCAGGGAACGGA 146048 33 97.0 34 T................................ ATAATGCCCTTTCGTCTTACCTGAATCGTTTCCT 145981 33 100.0 36 ................................. GTAGTTTGTTTTGGGCATATCCTCTTTGGGAATCGG 145912 33 97.0 34 G................................ GTGGTCGGATAACAAAGGCAACGGCTTGACTTCC 145845 33 100.0 35 ................................. GGTGGGCAAATAAATATGATGAAACCTTAAATATA 145777 33 97.0 32 G................................ CGCAGGGATTTAATGACGCTTGCCGAATGTAT 145712 33 100.0 33 ................................. CATCAGAATTTCGGGCGTTGATTTGCGGTCGGT 145646 33 97.0 34 T................................ TGTTGCCATTTCTTTTGCTCCTCAAATGCGACGA 145579 33 100.0 34 ................................. CGCCAACCTTGTTGCCCCCTCATGACGCAAATCA 145512 33 97.0 33 T................................ TTGTTATTTCACGATAACCTTTGTTACATTTTG 145446 33 97.0 33 A................................ TGCTTCAAGAAACCAAATCCGAAAATTTCTTGA 145380 33 97.0 33 G................................ TTCAGCGGATTCACATACAAAAGAAAGCGTTAA 145314 33 97.0 34 A................................ TTGAGTAAACGCAGGAACACTACTGCTACCTGTA 145247 33 97.0 32 G................................ TTTGCCTGTGCCGACACCGGAGACGGAAGCAG 145182 33 100.0 34 ................................. AACCTGATGGTAGTCGCCGTTACACAAATGACTA 145115 33 97.0 33 A................................ GGGCAACGGCTAAGATGAACGCGGTACAGCTCG 145049 33 97.0 33 A................................ GCCTCCGGCTGGGAATCATCGCCGAAATAATCA 144983 33 97.0 34 G................................ GATAGCGAGGGTAATCAGATTGATTTGAATTTGG 144916 33 97.0 33 A................................ GACCAATACGAGCGAAATAAAGAGCTTACAATC 144850 33 97.0 32 G................................ CGGCACATACTCAACCAACCAATCCGCCGCGC 144785 33 100.0 34 ................................. CAACCGTAAACGGCGGATGGTTAGACCGCGAACT 144718 33 100.0 34 ................................. CGTGATTGCCTGCCAAACCGCCTGAATCACATCA 144651 33 97.0 32 A................................ CGTTTTTCGGCGTGGTTGCCAAGCCGTAGCCC 144586 33 97.0 33 G................................ CCCCGCATACTCGGCAGGTTGCCTTGTAATGCC 144520 33 97.0 33 T................................ CCCCGCATACTCGGCAGGTTGCCTTGTAATGCC 144454 33 97.0 33 T................................ CCAAAAACTATCAAAGCTACTCGGCGGCAAGCC 144388 33 97.0 33 A................................ CCCTCACGGTCACGCCAGCCGACCTGATAAACC 144322 33 97.0 34 G................................ TCCAGCATTTACACATTGGACAAAAAAGTGTACG 144255 33 97.0 32 A................................ GTATCCGACTTGATCGAACACTTGCAAAAAAT 144190 33 100.0 32 ................................. CGCCGACGTCGCCTCTACGCCGTCAAACGTAA 144125 33 97.0 35 A................................ CGCCGTTATGGTCGGGGGGGAGGGCTGACAACAGA 144057 33 97.0 33 T................................ TGTAACCGTTACGAAAGTTAGGATTTTTATGTT 143991 33 97.0 34 G................................ TTTGTATGGATTAAACGGCATGCCGTTTTTTGCA 143924 33 97.0 32 T................................ AGCTTCTTTTAGGGCTTGGTGTAACGCTAGTT 143859 33 97.0 34 T................................ GTCAGGTGGTGGTGGTGGTGGTCGATTTGGTTCG 143792 33 100.0 33 ................................. ATACGACCATAAATCACCGTGCGCACGAATCCT 143726 33 97.0 34 A................................ TTTTGCGCGTTTCTTTTTCCGATTTTGTTTTGCT 143659 33 97.0 32 G................................ GCTCCGCTTCAACAGTGCCGGTTACAGTTCAA 143594 33 97.0 33 A................................ ATCAAATGTAGCCTGCGAAATAGGTTCTTTGAC 143528 33 97.0 32 T................................ GGTGTTGGTGCAACCGGCAAAGCCGACGTTTT 143463 33 97.0 34 .............G................... CCGCGACTGGCATCTGCACCGCGACACGGAGCGA 143396 33 93.9 33 T............G................... CCGATTGCGACCCGATGGAATATCAGAAGCTGG 143330 33 93.9 35 G............G................... TAAGAGTACCTAATATGCCATACGCAAATGCTTAA 143262 33 93.9 33 T............G................... ACTGGCTAGAGTTAAGGGGCTTTACAAGAATTA 143196 33 93.9 34 A............G................... ACGGAATATCTCCTATTTCGTTCTCGTGCTAGAA 143129 33 93.9 32 T............G................... ATCAATCATCGCGCGACCAAAGAATCCATGAG 143064 33 93.9 35 G............G................... TACGGTTTGGCGGCGGGAGAAATCGAAGAGACCGA 142996 33 97.0 34 G................................ CCCACTTCCGCCAAACAGTCCGCCGCCGCATTGA 142929 33 97.0 33 G................................ TTGACGCCGTCTTTGTCGGTAAAGTGGGTATAG 142863 33 100.0 35 ................................. TAATCGGAATCTTAGACAAACCTGCACCTTGACCA 142795 33 100.0 34 ................................. TCACCCTTATCGTTTATTGCCGCTAAGAATGCTG 142728 33 100.0 34 ................................. TCGTCAGGCGTGTACAGAATGCTTGCTGCTACGT 142661 33 97.0 32 T................................ GGGCTTTTCGGCGAGCGTGGGGACGAAGTCTT 142596 33 97.0 36 .............G................... ATAGTACCAGCCGATAAGACTAGGCGCATAGTTGCA 142527 33 93.9 0 T............G................... | ========== ====== ====== ====== ================================= ==================================== ================== 89 33 97.6 33 CCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Left flank : TGCACATGGGAATACAAAATGCTGATGCTGATTACTTACGATATTTCGCTGGAAGACGCGGAAGGACAGGCAAGGCTGCGGCGCGTGGCGAAATTGTGTCTGGATTATGGCGTGCGCGTGCAGTATTCGGTGTTCGAATGCGACATCGCGCCCGACCAGTGGGTTATTTTAAAAGACAAACTCTTGAAAACCTACAACCCCGAAACCGACAGCCTGCGCTTTTACCATTTAGGCAGCAAATGGCGGCGCAAAGTGGAACACCACGGCGCAAAACCGGCGGTGGATGTGTTTAAGGATACATTGATTGTGTGAATCGCCAACTTACGGTTCTCATGAAAATGCGGCAGGGTTGGCGAATTGGGATTGTTCTTTAACAATCAGGATATTGCGAATGCGGGTGTAACGGAAAAGGCTGTGTTATACTCGCGCTCGCGCTTTTCTTGGGAGCTTAGCGAAATCGGGATTGTGAAACCTGATGGAGCAAGGCTTTTGAGAGAGGC # Right flank : ATTAGGCCTGTCAATCTTGCAGCAATGTTATTTTAGAGTTTAGAAATCGCTATCCAAATATTCAATTAAATATTTTTACAGGAAAATAGAATCATGGAAAAAATAAAAAATTATATAGAATTCAAGAAATTATTTAAAAATATAACGGAAAAATTTGTCAGAGATTTAGATATAACATTAATTGAAGCAGCTGAATATTCTATAATTGAATTCGAAATTTATTTATCTGAATATCCGGAAGATAGTACATTTATTTTTACAGCATGGGCAATCTATCTGTTAGAAAATAACTGTCTCAATGAAAGAGGAAAAGATAATTTTTTCATCGCGGAAATGAAAAAATGTTATCAACAAACTAATTTGGATAGAATAAAATCTATCTATTCTTCGAGTGACTATCATATTTTTGCTAAGGATGTAAACAAGATTCAACAAACATTTAAATTAAATCTTGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGAGCGCGCCGCCGT # Questionable array : NO Score: 5.49 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.35, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //