Array 1 857-366 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIUR01000137.1 Clostridioides difficile strain FD224 sequence137, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 856 29 100.0 38 ............................. CTATGACCTAATCGCTAAGAATGTACTTTTTTTAGCTG 789 29 100.0 36 ............................. GTTAGCATTATTCTAGTGTCAATATCTATAGTTTTA 724 29 100.0 38 ............................. ATCTAATCCGATTAAATTTCCTAGTCTAGTACTTAAAG 657 29 100.0 37 ............................. GCGGAACGTTAAATCTTTCGCTTGCATCAGCTAAAGA 591 29 100.0 36 ............................. TCATTTACAAAACCTTCTGTAGTTATATTAATGAAT 526 29 100.0 37 ............................. TATATCCAACTATTTTTTTTATAGATTTTCCTCTAAA 460 29 96.6 37 .....G....................... ATTGCTCTTGGTCAAATACTCTTCCTCATAAAACCAC 394 29 96.6 0 .................C........... | ========== ====== ====== ====== ============================= ====================================== ================== 8 29 99.2 37 GTTTTATATTAACTATATGGAATGTAAAT # Left flank : ATATTTATGATATAATAAAATTATAGAAATTTTGCAGTGAGCGATATTTGTGAAAAAATTTGGCGTAACAGTTGAAATATAAGGTGTTGAGAGTGCATGATAAGCGTTATCAATTGCACTATTGCTCGTTCACTGCAAATTTAAGAGAGTTGTATACGTGTAAGTATTGAAAATACTAAGTTTATTTTGG # Right flank : TTTTTATAATTTTCTTTTAAGGTGTTATCTTATGATTATCTAGTTATATTAGCATACAAAAATATAATAAAATTACACTATATTATAAAAGTCAAAAGGTAATATAGAAATCTTATCACCTTTTTTATTATTAATTTTGTCAGTGTTTTATTATAAATAGCTTATATAATTACACATTTTTTCTGATTAAATAATATGATGCTATTTTTATAATAGATACTAATGTTAATGATGTTATTGCAGTATCCAATCTTATTATTTAATAAACTCATTTCTATATATTCAAGTTCTATTAAATATTGATAAAATATTTCTAGTTTAACAGCTTTTTCTCTATCTATATTTCATACTTTAACTCTAATTTAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 7979-7100 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIUR01000015.1 Clostridioides difficile strain FD224 sequence015, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 7978 29 100.0 37 ............................. TAAAATTCAGAAGTAAGGTTTTTTCTTTGTATGAACT 7912 29 100.0 36 ............................. TGGTATTCTTCTGTGTCGTAACTTGTTCCACCTTGG 7847 29 100.0 37 ............................. GCAACTTTGTCCCAATCGTAACTACCAGGTATATAGG 7781 29 100.0 37 ............................. TTTTCAGTTTACATATTAAATGGTAGATGCAATTTAT 7715 29 100.0 37 ............................. AAATGAAGGGCTTATCAGAAATTTTAAAACTACTAAA 7649 29 100.0 36 ............................. TCAAAACTTGCTTTCTTATTATATTGCTTACAGAAG 7584 29 100.0 37 ............................. TGGGCTAACGAATAAAAGAGGAGGAGTAAATATGTTT 7518 29 100.0 38 ............................. TTTTTCTCTTTTTCTTCTAATTCTTCATCTAATATAAA 7451 29 100.0 36 ............................. TCGCACATGAGCAACGTCGAGACAGGTAAATCTACT 7386 29 100.0 35 ............................. TTACCCGGAACGCTTTCAACTCTGCTGTTTACAAG 7322 29 100.0 36 ............................. ACTTGTCTAGCCATTCAGTTTTTATTTTATCACCTG 7257 29 82.8 36 ................A.....GA...GT AGAATATTAGCAATATAAACGAGTATTTAGAAACTT 7192 29 79.3 35 ............TA...CA....A....A TTGTAGAATCAACAATAGAATATACTAAATCAGCC 7128 29 72.4 0 ACC.............A.CA...C....T | ========== ====== ====== ====== ============================= ====================================== ================== 14 29 95.3 36 GTTTTATATTAACTAAGTGGTATGTAAAG # Left flank : CATTTTATAAATGATGAAAGGTACAAAGTTTTAAAGGTGTGGTGGTAAGTATGTTTGTTATTGTTACTTATGATATTGTTGAAGCAAAGTCGTTAAATAGAATTAGAAAGATACTTAGAAAATATTTGACTTGGACGCAAAATTCTGTTTTTGAAGGTAATATTACTGATGGAAAGTTACATAAATGTATTTCTGAAATAGAAAATATTATTGATAATAGCGAGGATTCAATCTATGTTTATGAGATAAAAAATCCTAATTCAATTAAAAAGAAATGTTATGGTATTGATAAGTATTCTGATGAAATGTTTATATAGGTTTGCAGTGAGCGATATTTATGCTAAAATAGGTGTTAACAGTTGAAATATAAGGGATTGAAGGTGTATGATAACTATTATCGATTGCACTACTGCTCGCTCACTGCAAATTTTGATGTTTTTATTGAATTATAATTGCTTGATTGAAGTATTTTCAATGTATTCAATTACACCTATTTTGGG # Right flank : AAAATACACTTACCTATAAACATTATAAAATCAATACAAAAATGAGGTGAAACAAAATTTATGATAAGGAAATTAAACAATAAAGACATAAATAAAATAATGGAAATATGGGAAAAAAGTACAATCAAAGCACATGACTTTATAAGTAAAGAATACTGGCAAGATAACTATAATGCTGTTAAAAACGAATATATACCTATATCAGATACATTTGTATATGATGATGGAGATGAAATAAAAGGATTTATAAGCATAATAGATAAAAGCTTTATAGGAGCTTTATTTATAAAACCCAAATACCAAAATATAGGTATCGGAGGTAAACTTTTAGATTATGCAACTAAAAAATATAAAAGTCTAAGCTTAGCAGTATATAAAGATAATAAAAAAGCAGTTGTGTTTTATAATAAAAAAGGTTTTAATATAGTAAAAGAACAAGTAAATGAAGATTCAGGATTTAAAGAGTACATAATGGAATATAGTAAATAATATGAGTGCAT # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [19-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 10664-11187 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIUR01000035.1 Clostridioides difficile strain FD224 sequence035, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================================================================================================================================================================================================== ================== 10664 29 100.0 37 ............................. TGATCAAGAACATCTTGTTGCTCTTGCTTTATTTCTT 10730 29 100.0 23 ............................. ATATTTATCTAATTCTTCTTTAA Deletion [10782] 10782 29 82.8 37 AC....A..C.T................. ATTTCTTTAGCTTTTAATTCTTTTGAAACTTCTGCCA GTT [10795] 10851 29 100.0 36 ............................. GCAAAACTAAAACTGGCTTTGACTAAAGTAGATATA 10916 29 93.1 212 C.......................C.... AATAGAAATAAAAGTCTAATAAAATAGAGAATCAAATATAATCATCTGATTCTCTATTTATCTTCTTCCCAATCTTTAATAAACTTTTCTAAACTTTTTAATTTATTTTCAGATATTTCTTCATCATCATGTAAAGCACTTAACAAACTTTCAAATGAATTTCTATGAAAGAAACTAAAGAAACTCTTAGTCTCAACTTTCAAATATTCTTC 11157 29 79.3 0 T....C........TT..AA......... | TG [11168] ========== ====== ====== ====== ============================= ==================================================================================================================================================================================================================== ================== 6 29 92.5 69 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : AATAGTTAAAATGGTTGAAAATACAGATTCCGATTTGGGATTTTATATTAACTAAGTGGTATGTAAATGTAGGAACTGACTTCATAAGAATATACAATAACAGTGCTTTTATATTAACTAAGTGGAAAACAGAGTGGTTTTAAACTACTCTGTTTTTATATAAAGTAAAAATAGAAATATAAATTAAGAAAGAAGTGCATATATAAGTTATAAAATAAATTAAATAATAAGTTTTATAAAAATGCATATATAAACTTAAATGATTTTGGTTCTCTATACTCAGTTTATTTAATAAACTAAAATTTTTATTAGATAATTTATGCTATAATAAATATATAAATATGCAGTGTGCGATATTTTGAAAATAAATGCTATAAGGGTTGTAAATACTGAATTATAATGTGTTTTTAAAAATATCAAAAAAACACTACTTGTGGCTCACTGCAAATTTCAATATTTTCTGTATCTGAAAGTATTGAAAATGCCCAATTTATTTCGGG # Right flank : TCTATCTTTCTTAACAACTTCTAAAAATCCTCTACCAACTAACCTTCTTAAAAAAGTTAACATAGTTGATTTTTTCCATTCATATTTTTCACCTAGCGTCTTCAAAATTTCAGTAGATGCAACTTCTTCATCTTCACTATCCCAAATGTACATCATTACCAAAAGCTCTGACTCTGGAATCTTTTTTATTTTCAAGTACTACACCCCCGTTTTTTGATATACTATAATACTATTACAATAGAATTTAATTTACAATGAAAAATGTCTAATTATGCATTCCAATTTTTTCCAATTAATTCTGATTATAAAAAATACTTTAATATGCTAATTATAAAGACATATTATAATATTAAATAAATTATTTATTTAATATTATAACTTAAAAGCAGTTCGAAAAAATGTATACAATATAAGTGAAAGTCTTTATTGAATGCCATTTAGTACAACAAAATATTTGCTATATACCTAATAAAATTCTTTTGATGTCATGATATTACAGT # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:-0.16, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.14%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 18605-19553 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIUR01000053.1 Clostridioides difficile strain FD224 sequence053, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 18605 29 100.0 37 ............................. TGTACAATCAGCTTCTTTGATTTTACAACATATAAAA 18671 29 100.0 36 ............................. CTAAAATTTTCATCATTACCTTTTAATGCAGTAGGA 18736 29 100.0 38 ............................. ATCCATACGGTGCTTGTCATTCCACATACGAGGATTAA 18803 29 100.0 36 ............................. CCAAATTGCTTCACTGGTAGACCTAATGCTAGATCA 18868 29 100.0 37 ............................. ACTCCTCATATATGTAGAGTCTTGTGCAATATATACA 18934 29 100.0 37 ............................. AATTATTTGATGATATATATCAAAGAGTTGAATATGC 19000 29 100.0 36 ............................. TGATGCTAAAGGAGTGGAAAGAATTTCTTTAACAGG 19065 29 100.0 37 ............................. AGATTTTATTATAGAGTAGAGGAAGGGCTTGTAAATG 19131 29 93.1 37 ...............T....T........ GAGATTTGTATGGAGGCTATAAAACAAAACGGATTAG 19197 29 89.7 35 ......T........T....T........ ACTGAAAACATAAAAGATGCTATGATTAGAGTAAG 19261 29 93.1 37 ...............TA............ GAATTTTCAACACGCTGTGCTATCTTAGTTACTCCTA 19327 29 93.1 37 ...............TA............ GACTACGAGAGGGCATTTGTTGCTGCTTCTATAGATA 19393 29 93.1 37 ...............TA............ AGTGCTGAACTAGCTTCATCTCTAATCTTAACTGCTG 19459 29 93.1 37 ...............TA............ GGGTGGGAGATATGGCAACTATCCACACATGAAATTG 19525 29 86.2 0 ...............T.....T.CA.... | ========== ====== ====== ====== ============================= ====================================== ================== 15 29 96.1 37 GTTTTAGATTAACTAAGTGGAATGTAAAT # Left flank : CACGACTAAGAGTGACTTTGATTTTAAACTTACAATCAAGTTTAAAAGAAATAAACATTAATTTTTAGAACTTCACTCTAGTTTCAAATAGATTGTAGTTCTTCTTGCTTTTATTATACCACAAATTAGAAAAAATATTGCCTATAATATTTTTTATAGTCAATAAAAAGATGAAATTTTTTATACACAACGATGATAAATCTAACGGGATGAATAAATTTAATTGTAAAAGTTGTAAATAAGGAAGCACTTACAAATATGTAGGTGCTTTTAAATTTACAAATTATTCCATTTTAATTTTATAGTTTAGATTTTATGATATAATAAAAATATAGAAGTTTTGCAGTGTGCGATATTTGTTACAAAGTAGGGCTTAATACTTGAAATCTAAGATGTTGAGGGTGTATGATAAGTGTTATCATTTGCACTATTGGTCGCTCACTGCAAATTTAAGAGAGTTGTATATGTGTAGATATTGAAAATGCTAAGTTTATTTTGGG # Right flank : TTAAATAAACAAAGAAAGCACTTACAGACATGTAGGTGCTTTTGTTTTGCTCAAATTGGTCGGTTGGGTAAAATAATTAGAAAAAATTAGTAAAAACCTATTGAATTATTGGCAGACATCAATTATAATAATAAGTGTCAGCCAATAATTATGCAGGAGGTGATTACTATAACTAAAAATAAGGTTGGCAGACCTAAAACGGAAACTGCTATGAATAAAAGAATTACAGTTAGATTGGATAGTAAGCATGAAGAAATTTTAGAAACATATACAAAAAAATATGGTATTACTAAAAATGAAGCTGTAAGAAAAGGTATTGAGAAGTTAGAAGAGAAGGAATAAAAAATAAGGGTCACTCTCCCCGACCAAAGATTGAGTAACCCCTATTGATGTATACTACAAATATACTAATGTTAGTATACATCATTCCTTAAAAAAATTCAAATTTAAGGAGTGTAATATTATGAAAAATTTAATAGTAAAAGAGTTCAATGGAAGTC # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATTAACTAAGTGGAATGTAAAT # Alternate repeat : GTTTTAGATTAACTATATGGAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 21427-21784 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIUR01000053.1 Clostridioides difficile strain FD224 sequence053, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 21427 30 100.0 35 .............................. GCATTTGTTAATTCTTGCATCTGCTCTTTGTATGA 21492 30 100.0 36 .............................. TAATATATAGAGAATTTAATAAATAGAAAACATTAA 21558 30 100.0 37 .............................. TTATTAAAACCATTCTTGCAAGTAATTGCCAGCTATT 21625 30 100.0 34 .............................. TACCAATTCTACTCACTATTTGTGCAGTATCTAA 21689 30 96.7 35 ............T................. TATGCATATAATAATCCACTTTTTATGTTAAAATC 21754 30 96.7 0 .............................A | A [21778] ========== ====== ====== ====== ============================== ===================================== ================== 6 30 98.9 36 CTTTAAGAGTAACATAGGATGTTTTTAAAT # Left flank : TAGTTTAGTTTTGAGGGGGATTAATACAATGTATGAGAATTTACTTAAGGAGTACGATTTAAAAACTGATGAAGATATAGAGTATTTTGTAAAATTTGCTAATGCGTTATATGAACTAAAACAGAATAGTGAAGAAAAGTTTCAAGAATATGCAGAGATTTTGAGAGAAATATTTAGAGAGCAAGAAGAGAGAGAAAATAATTAAATAATAAATAGATAAAGCACTTATAAGTACATAAAAGTGCTTTATCTTCCAAAATATGCTATAATTGTAGTATTAAATATATAGGGTGATTACGCATCCTAAATGTGAGATTATCCCAACCAATTGGAATTGATACTCACAAAGATAATTACTAAATAAGGTGATTATCACCGTCCCAATGAATATTGGGTAAAAACATCTGAAATTTAAAAACACTTGGGATAAAACTTATGGAAATAAGTAATTGCAATAATTTTAATGATTTATGTTGTGCAAAAATGTGTATTTTACAGTA # Right flank : ATTATAAAAGGAGGTGTTAAAGATGATAAGTACAAGAAAAATAAAAGTAAGATGTGATGATAGTACATTTTATACATTCTTTAGGCAAGAACAAAGAGAACAAAATAAAGCTCTAAATATAGGCATAGGTATAATACATGCTAATGCAGTATTACATAATGTAGATAGTGGAGCAGAAAAGAAACTAAAGAAAAGTATAGAAGGTTTACAGGGTAAAATTGATAAACTTAATAAAGACTTAGAAAAAGAGAAGATAACTGATAAAAAGAAAGAGGAAGTATTAAAAGCGATTGAGACTAATAAAAAGATATTAGATGGAGAGAAGAAGGCTTTTAAAGAATCAGAAGAGTATAGAAAAGGAATTGATGAACTTTTCAAAAATACATACTTAAAATCTAATACATTAGACCATGTTTTAGATAGTATGGTTAATATTCAGTACAAAAGAACTTTAAGCCTAGTTACACAAAGGATTAAAAAAGACTATAGTAATGATTTTG # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAAGAGTAACATAGGATGTTTTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 3 23430-23983 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIUR01000053.1 Clostridioides difficile strain FD224 sequence053, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 23430 30 100.0 34 .............................. TAACTACCAGGCACGTAAGGCAAATCGTAAGCAA 23494 30 100.0 36 .............................. GACGATATAGGCGCAGGAGCTAAATATTCTGAATGG 23560 30 100.0 36 .............................. CTTGAAAGAAAAAATAGTTTACAAAATTATAAGATA 23626 30 100.0 35 .............................. AATGATAGATTAAAGGTTTATGAAAAAGAATACAA 23691 30 100.0 35 .............................. TCTAGACCGGGATGGGAAATATGGCGACTATCCAC 23756 30 100.0 34 .............................. TGAAGTAAAGCAGCTTCTTTATTATAAGATTTAA 23820 30 100.0 36 .............................. CAAGGATAGAGCAGAAAATTGGAAGAAATGCAAATG 23886 30 96.7 36 ................G............. TTAAGTAAACTTTCACGCATTTTATTAATCCCTCTC 23952 30 86.7 0 ................G.....AAA..... | AA [23974] ========== ====== ====== ====== ============================== ==================================== ================== 9 30 98.2 35 GTTGAAGAATAACATGAGATGTTTTTAAAT # Left flank : AGATGGATTTGATAATATTATCTTAAGAAACTGGTCATATTTTGAATTGCAGAAAATGATTGAGTATAAAGCTGAAAGAGAAGGAATTACTGTAAGATATGTAAATCCGGCATATACAAGTCAGAAGTGTTCAAGATGTGGTGAGATAGACAAGGAAAATAGACAGACACAAGCAAATTTTAAATGTACTAAATGTGGATTTGAACTCAATGCAGACCATAATGCAGCTATAAATATAGCCAGAAGTATAGAATTTGTATAATTAAATAGATATAATATAAATATAGGGTGATTACGCATCCTAAATGTGAGGTCATCCCAAGTGATTTGGGATAGGCACTCGCAAAGATAGTTGTTAAATGTAGCAGTTATCATCGTCCTAGCGAATCGCTAGGTAAAAACATCTGAAATTTAAAAACACTTGGGATAAATTTGATTAATGTTAGTATTTACAATGGTTATGTTGTTTTATTTTATTTAAGAATGTGCATTTTTAAGTG # Right flank : TATTTATATAAAACACTTACTCAGGTAGGTGTTTTTTTATTGAAAGGATGTGATTATAATGTAAAAATTTTGAAGATATAGTATAATATTCTTATAAAATATAATTTAGGGGGATATTATGAGAGAAGGAAAGAGAAGAAGAGGATGTCTATTTTGGTTTATTCTTATTATTTTATTTTCTGGAGTTGTTGGAGCAATAGCAGGGAACAGTACTAATAATGAAAGCACTGAAAAACAGAAAGAGGATTTAACTAAATATATTGGTGAAGAAGGTAGTATAGGAGATTTAAAATTAACTGTTAATAGCATTTCAAAAGCTAGTGAAATATCAGTAGCATCTGGTTATTTAGCATACACTCCAGATAGTGGCAAATATGGTATTATAAATTTAACAATAAAAAATCAAACTAAGGAAAGCCAATCTTTTATGCTAAATTCATTCACATTAATAGGACCAGATGATTCAAAATATGTTCCATCTTTATTGATTGATGTAGGAA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAGAATAACATGAGATGTTTTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 14207-13912 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIUR01000007.1 Clostridioides difficile strain FD224 sequence007, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 14206 29 100.0 39 ............................. TGAATTAGTTTTAATTTAAGTTAATAATAGAACCTTCTG 14138 29 100.0 37 ............................. AACACTCTGCTTACATTTGATAGAAAAAACAGTTCTT 14072 29 100.0 37 ............................. TCCGAATTAATATATAATTAGTATATAAATATTTTAA 14006 29 100.0 37 ............................. AGTATAATGTTGAAAAGTTAGAGAGTACAATCAAGAA 13940 29 72.4 0 ......C.........AAT....AG..TA | ========== ====== ====== ====== ============================= ======================================= ================== 5 29 94.5 38 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : TTAAATATCTAGGGTTTTATTTGACGTGATCTTTTTTAGATAGTAAACTTTAAAATATAGATATTAATTATATGAATATAATAAAAAGAGTACTAATGAGTTACACTAGTACTTTATAACTACTTTTACATGTTTTAACTGTATAAAACAGTGGGTATAGTTCAGGCAGGAGTGACTTTAGTTTTGAACTAAAAATCAAGTTCAAAAAGAATAAACATTAGTATTTGAACTTCAATCTACGTCTAAATAGATTGTAGTTCTTCTTGTTTTTATTATACCACAAATTGGTACAGATATTCAAAAATAATATACTTATGATATAATAAAAATGTAAATAGTTTTGCAGTGAGCGATATTTGTTACAAAGTAGGGCTTAACGCTTGAAATATAAGGTGTTTAGGGTATATGATAAACTTTATCATTTGCACTACTCATGGTTCACTGCAAATTTAAGAGAGTTGAACATGTGTAAGTATTGAAAATGCCCAGTTTATTTTGGG # Right flank : AAACATGTATTTATACTTAAATTCTGTACCTATATAAAAAAGTGAACTCTGTCAACAAAGCACTTTTTTATATAGATAAATTATCATTTTGTTTTAAGATAGAAGATACTAATGATAAATGTTTATCATTAGTATCTGTATGTACATAAAAGTTTAATTTTTTATATAAATTTGCTCTTTAGAAAAATGAGCAGTATCAATAAATATATTGTCTAAATTTTTTTTAGGAACTAGTTGACTAGCTATAAGATTAGCTTCAACTCTTTGATTGTTAGACTATGAAATTAAATTTAAAGGTTCATTCTTGGTCGTATAAATAGCTTTATCATTCGTATGTACTATAACAATTTTTGCCATCTGCTTTTGATAGATAAAGAGCTTTATCAGCTTTAGAAAATAAATCTTTATATAATTTAGTTGAATCATCAGTGAAGGCAATACCAATGCTTAATGTTATTTTATGATTGTCCTTTACTTTTATTTTACTTGCATCATTTAAA # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 18443-18602 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIUR01000072.1 Clostridioides difficile strain FD224 sequence072, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 18443 29 100.0 36 ............................. TTTTTTACAGATTCCCAACTATTTTTTACACCTTCA 18508 29 100.0 37 ............................. TAAACGGATACAGTATCAACATCATTTTTAATATGAG 18574 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 3 29 100.0 37 GTTTTATATTAACTATGTGGTATGTAAAT # Left flank : TACTATTATATATAACTGAATATCTAAGTGACATTTAAGAAAAATACGATACTTACTGACATAAAACTGAACATTATTTAAAGATAACCTTGATTATATTTTCAGAAGTTTCTTTATCCATATCATCTAAAATAAGAAAATATCTATTCATAGTTATTTTTATATCAGTATGTCCTAATCTTTCAGAGATGATTTTTATATTAGTTCCAGCTAGAAGAAGAACTATTAGAATAGATAATATAGTAAGCATTTACAGATATGCAAGTGTTCTTAAATTGATAAATTATTCCATTTTATTTTTATAGTTTGAATTTTATGATATAATAAAAATATATAAATTTTGCAGTGAGCGATATTTTTGATAAAGTAGGGTTTAACAGTTGCAATGTAAGGGATTGAGGGTGTATGATAAATGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTGAGAGAGTTGTATGTGTGTAAGTACTGAAAATACTTAGTTTATTTTGGG # Right flank : TTTGAAACAACTTTATCCTCTTTTAATTTGCTGATACTGTTTTATATTAACTATGTGGNNCTATGTGGTATGTAAATTTGCAACAAGTATAGGTAAAATACCCCAATAATTTATATAGCATTTTCTCCCCTAAAATATAATTATTTTTTATCATTTGTAGTAAATAATTACCAGATAACATTGACTTTAGTTTTAATGATTAAAATATAAAAGTAGAATAATTATAAAAAGTATTGAAAAGTTTATAAACATATAATAAAACTTAATGACAAGATATTAGATATAAAAAATAATTACCTTATAAGTAGATTGAAATTTATGAATATTCATACTATAATTTAAATATAAGGAGATGACCTTTGAAAATAAAAATTAAAAAATATTTAATGCTACTACAATAGGAACTAGAACTACACTTAATAAATATACAGAAATTAGATTTGGCTCAATATAAAATACAAATATAGAATTTAGGTGTTTTTTATGAAAAAAATTTTATA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 9491-9981 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIUR01000077.1 Clostridioides difficile strain FD224 sequence077, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 9491 29 100.0 37 ............................. AGGCTTTCAACATGAGCTAAGAAATAGAATTGTTACA 9557 29 100.0 37 ............................. GGAAAAATAAAAGAAAAATTGGACGATATAATAAGAA 9623 29 100.0 38 ............................. AATTTTGCAAATTTTGAATCTGTCTTATATCCATTCAA 9690 29 100.0 37 ............................. ACGAGAACATCTTCCCCAGGAACTCCAATTAAATCGC 9756 29 100.0 37 ............................. GTAGAAGTTCATGGGATATTAGTTGAGAAATATTCTA 9822 29 100.0 36 ............................. TTCATTAAATCACCAACTGAATTATCTTTTAGCATT 9887 29 100.0 37 ............................. ACTGATATAACTTCTTTTGGAGAATTGACTATAAATA 9953 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 8 29 100.0 37 GTTTTATATTAACTAAGTGGTATGTAAAG # Left flank : TTATGAAATATCTGTAAATAAGTAGATATTTCATAAGTTAATATTTATTGTTTGTATAAAATATTTGGTAAAAATAAGTAAGTTTTATATGTTATAATAATTGTAGCAAGAATAATAATCGAAAGCAGCAAGCATGTCAGCTGGTGTTATATCAGTTTATATTTATGATAAAATAAAAATCTCCCAAACGCCAATAAGGATGATTTAAAAAAATAATATTTTCACTTAAAAATAATCACTCTTTATAGGAGTAAATTATTTTCTTGATTTTATTATACTACAAATTGGTACAGATATTTAAAAATAATATATTCATAATATTATAAAATTATAAATAGTTTTGCAGTGAGCGATATTTTTGATAAAATAGGGCCTAATAGTTGAAATATAAGGCATTGAGTGTATGTGATAAATGTTATCATTTGCACTACTCATGGTTCACTGCAAATTTGATAGAATTGTATAGATGTAAGTGTTGGAAATACTCAATTTATTTTGGG # Right flank : GACAGATCTAATATCAAAATAAGGTTATGACTTTTAAAAGCATAGCCATATCAGTAAAAATTTAATTATCATTTAAAAAATAAATTTTTATTTAAAGAATACACATAAATATTTCCAGACTCAACTCTCTTAAACTATTTCCATATCCTTTAGTAGATACTTTTGTTGTTTTTTAATCTTTAGTAATTTGTTCTTGAGTGAACCGCTTATTTTTTCTAAATTATTTCAAGCTTTTCAAAAAATTCTCTATTTATATTCATCACATGTATAATACAATTAATTCAGTTTCAATTGTCAATATTTAGTTTTTCTGTATCTGATAAACCAAGAATATAATCAGTAGATAAACCAAAAATTTTAGCAAATATTATTAACACACGTCCCTTATTGCTCTTTCACCAGACTCTATTCTATTCATAACACTTATATTTATATTTGTTTTTTTAAACAATTCTTTTTGAGACCTACTCATATTTTCCCTAATATATTTAATCCTTTGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //